Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027619.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

1593 .. 2982

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggagacggccaccgtcgccggagctgctgtgattctgtacgacatgtttggctggaaagtgtcgtcgaagcggagatttctccaagtcgagatcagcgaggaggaggctttctcgaagaccggctcaggcgccggccacgtggatcgagtcaatgtccaccttcttctggagcctgcgttcaccattctacgtgataaagattcaaaatgctttcttatgttgatatgtggtatacatagtatcaaaaatacactaactgccacaactggtgcaatggcccctttccaccattcggttttggatgatggtgcaataagcaacttagtcctagaatatgctcactgtgggatggttgttgcagcccgttggattgctcagttcagtactccttgcttgcttaaggttcttggtgaatatcctgagtatacagtaaaggtgaatgtcatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

151

Amino Acids

16.53

Weight (kDa)

6.28

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	2 cut(s)	235, 428
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	9, 136
AcvI	CACGTG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	41, 388
AfiI	CCNNNNNNNGG	2 cut(s)	169, 295
AflII	CTTAAG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	207
AloI	GAACNNNNNNTCC	2 cut(s)	164, 196
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	3 cut(s)	9, 136, 279
ApeKI	GCWGC	2 cut(s)	26, 362
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	175, 425, 451
BanI	GGYRCC	1 cut(s)	131
BbrPI	CACGTG	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	13, 374
BccI	CCATC	2 cut(s)	302, 346
BceAI	ACGGC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	2 cut(s)	27, 363
BlsI	GCNGC	2 cut(s)	28, 364
BmcAI	AGTACT	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	3 cut(s)	133, 174, 282
BpiI	GAAGAC	1 cut(s)	125
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	127
BsaAI	YACGTR	2 cut(s)	142, 194
BsaHI	GRCGYC	1 cut(s)	132
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 295
Bse118I	RCCGGY	2 cut(s)	122, 134
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	310, 357
BseLI	CCNNNNNNNGG	2 cut(s)	169, 295
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	141, 392, 414
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	2 cut(s)	116, 119
BseXI	GCAGC	2 cut(s)	13, 374
BshFI	GGCC	3 cut(s)	11, 138, 281
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	21, 123, 135
BslI	CCNNNNNNNGG	2 cut(s)	169, 295
BsnI	GGCC	3 cut(s)	11, 138, 281
Bsp143I	GATC	2 cut(s)	93, 145
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	3 cut(s)	11, 138, 281
BspCNI	CTCAG	3 cut(s)	140, 391, 415
BspHI	TCATGA	1 cut(s)	452
BspLI	GGNNCC	3 cut(s)	133, 174, 282
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	2 cut(s)	122, 134
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	2 cut(s)	122, 134
BssMI	GATC	2 cut(s)	93, 145
BssNAI	GTATAC	2 cut(s)	236, 429
BssNI	GRCGYC	1 cut(s)	132
Bst1107I	GTATAC	2 cut(s)	236, 429
Bst4CI	ACNGT	3 cut(s)	16, 347, 433
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	401
BstBAI	YACGTR	2 cut(s)	142, 194
BstC8I	GCNNGC	3 cut(s)	136, 177, 398
BstDEI	CTNAG	4 cut(s)	127, 325, 378, 423
BstF5I	GGATG	2 cut(s)	310, 357
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	96, 148
BstMBI	GATC	2 cut(s)	93, 145
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 26
BstNSI	RCATGY	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	13, 374
BstV2I	GAAGAC	1 cut(s)	125
BstZ17I	GTATAC	2 cut(s)	236, 429
BsuRI	GGCC	3 cut(s)	11, 138, 281
BtsCI	GGATG	2 cut(s)	310, 357
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	3 cut(s)	136, 177, 398
CciI	TCATGA	1 cut(s)	452
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	2 cut(s)	122, 134
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	40, 387
CviAII	CATG	2 cut(s)	46, 453
CviJI	RGCY	9 cut(s)	11, 26, 54, 110, 126, 138, 175, 281, 365
CviKI_1	RGCY	9 cut(s)	11, 26, 54, 110, 126, 138, 175, 281, 365
CviQI	GTAC	2 cut(s)	40, 387
DdeI	CTNAG	4 cut(s)	127, 325, 378, 423
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	95, 147
DpnII	GATC	2 cut(s)	93, 145
EaeI	YGGCCR	2 cut(s)	9, 136
Eco72I	CACGTG	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaeI	CATG	2 cut(s)	49, 456
FaiI	YATR	8 cut(s)	47, 221, 229, 236, 240, 339, 429, 454
FatI	CATG	2 cut(s)	45, 452
FblI	GTMKAC	2 cut(s)	235, 428
Fnu4HI	GCNGC	2 cut(s)	27, 363
FokI	GGATG	2 cut(s)	317, 364
Fsp4HI	GCNGC	2 cut(s)	27, 363
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	27, 363
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	11, 138, 281
HapII	CCGG	3 cut(s)	21, 123, 135
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	49, 456
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	3 cut(s)	34, 150, 203
HpaII	CCGG	3 cut(s)	21, 123, 135
HphI	GGTGA	3 cut(s)	175, 425, 451
Hpy166II	GTNNAC	4 cut(s)	160, 183, 236, 429
Hpy188III	TCNNGA	5 cut(s)	91, 115, 170, 422, 453
Hpy8I	GTNNAC	4 cut(s)	160, 183, 236, 429
Hpy99I	CGWCG	2 cut(s)	20, 70
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	3 cut(s)	16, 347, 433
HpyCH4IV	ACGT	2 cut(s)	141, 193
HpyCH4V	TGCA	3 cut(s)	275, 314, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 26
HpyF3I	CTNAG	4 cut(s)	127, 325, 378, 423
HpySE526I	ACGT	2 cut(s)	141, 193
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	49, 456
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	93, 145
LmnI	GCTCC	2 cut(s)	23, 172
LpnPI	CCDG	9 cut(s)	34, 40, 114, 136, 148, 155, 189, 255, 435
Lsp1109I	GCAGC	2 cut(s)	13, 374
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	141, 193
MalI	GATC	2 cut(s)	95, 147
MboI	GATC	2 cut(s)	93, 145
MboII	GAAGA	2 cut(s)	130, 158
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	3 cut(s)	94, 97, 100
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	1 cut(s)	402
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	3 cut(s)	21, 123, 135
MwoI	GCNNNNNNNGC	2 cut(s)	17, 26
NaeI	GCCGGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	93, 145
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	49, 456
NlaIV	GGNNCC	3 cut(s)	133, 174, 282
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	452
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	34, 203
PkrI	GCNGC	2 cut(s)	28, 364
PleI	GAGTC	1 cut(s)	158
PluTI	GGCGCC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	158
Ppu21I	YACGTR	2 cut(s)	142, 194
PscI	ACATGT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	133, 174, 282
PspPI	GGNCC	1 cut(s)	280
RsaI	GTAC	2 cut(s)	41, 388
RsaNI	GTAC	2 cut(s)	40, 387
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	2 cut(s)	27, 363
Sau3AI	GATC	2 cut(s)	93, 145
Sau96I	GGNCC	1 cut(s)	280
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	1 cut(s)	159
SetI	ASST	6 cut(s)	28, 144, 165, 196, 408, 441
SfoI	GGCGCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SsiI	CCGC	1 cut(s)	73
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	16, 347, 433
TaiI	ACGT	2 cut(s)	144, 196
TaqI	TCGA	4 cut(s)	68, 90, 116, 148
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	2 cut(s)	34, 203
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	2 cut(s)	26, 362
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	401
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	2 cut(s)	235, 428
XspI	CTAG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.