Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007269.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

34539 .. 41760

Gene Structure 7222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007269.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgaactcgcctcaacctgctgatcatcatcgcagaaggatcgcacctggagtgaccggtttcacgttcgtcggagctcgaccggaatcgaagcgagttgttgacgtttttaggttgaacggagcctctgctggattctggaaattttccagccaaaccatggcttctaggaaagtggttgggcttgatgagacgaagtggaacagcatgaccccgacaccgttggcggtggtcggcggcggctctgtccaaactccggcggcccttttcggccacctccgggggaccagtgtggtgtattgtgatttgaggattgaggaaatgtattccttgtggtttggtgttgttgcaatcccggttcactattcaaattgtgtagcgggtagtcctgcatgtcaggaggatcatggcggagatcgtgcgattagagtatttgttttagttttacagctttgtaaattgcgagttactgagaaaatgcttgaaagagaaagatatgagatatttgatacttatgattggcttaaacagacgtttgagtcctgtgactgcaagtctatagactttgattcttgtgactgcgagtttgtgaggattttggatacttcaggttgcaagtgggctgttatagctttatctcttctgaagcctgctttcaccattctacgtgataaagattcgaaatgctttcttatgttgatacgtggtacatatagtatcgaagatacactaactgccgcaactggtgccgtggcccctttccaccattcagttttggatgatggtggaataagcaacttagtcctaggatatgctcactatgggatggtagctacagcccattggattgctaagctcagtactccttgcttgcttaaggctcttggtgaatatcctgagtatacagtaaaggtgaatcccatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

309

Amino Acids

34.17

Weight (kDa)

7.08

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	538
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	746
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	902
AciI	CCGC	7 cut(s)	227, 237, 240, 260, 380, 411, 738
AclWI	GGATC	2 cut(s)	47, 411
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	591, 665
AfaI	GTAC	2 cut(s)	709, 862
AfiI	CCNNNNNNNGG	3 cut(s)	160, 256, 280
AflII	CTTAAG	1 cut(s)	875
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	118, 369, 485
AhdI	GACNNNNNGTC	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	5 cut(s)	77, 451, 632, 833, 856
AluI	AGCT	5 cut(s)	77, 451, 632, 833, 856
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	47, 411
AoxI	GGCC	3 cut(s)	261, 271, 753
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AsiGI	ACCGGT	1 cut(s)	56
AspA2I	CCTAGG	1 cut(s)	805
AspS9I	GGNCC	3 cut(s)	262, 285, 754
AsuC2I	CCSGG	2 cut(s)	281, 356
AsuHPI	GGTGA	3 cut(s)	649, 899, 925
AsuII	TTCGAA	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	285
AvrII	CCTAGG	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	2 cut(s)	776, 820
BceAI	ACGGC	1 cut(s)	734
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	595
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	2 cut(s)	281, 356
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	168, 806
BfmI	CTRYAG	2 cut(s)	558, 834
BfrI	CTTAAG	1 cut(s)	875
BfuAI	ACCTGC	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	595
BisI	GCNGC	4 cut(s)	238, 241, 261, 738
BlnI	CCTAGG	1 cut(s)	805
BlpI	GCTNAGC	1 cut(s)	852
BlsI	GCNGC	4 cut(s)	239, 242, 262, 739
BmcAI	AGTACT	1 cut(s)	862
Bme1390I	CCNGG	3 cut(s)	48, 281, 356
Bme18I	GGWCC	1 cut(s)	285
BmeRI	GACNNNNNGTC	1 cut(s)	553
BmgT120I	GGNCC	3 cut(s)	262, 285, 754
BmiI	GGNNCC	4 cut(s)	124, 286, 748, 756
BmrFI	CCNGG	3 cut(s)	48, 281, 356
BpmI	CTGGAG	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	852
Bpu14I	TTCGAA	1 cut(s)	680
BpuMI	CCSGG	2 cut(s)	281, 356
BsaAI	YACGTR	2 cut(s)	668, 704
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	159, 280, 750, 805
BsaWI	WCCGGW	2 cut(s)	56, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 256, 280
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	288, 748
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	4 cut(s)	159, 280, 750, 805
BseGI	GGATG	2 cut(s)	784, 831
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	160, 256, 280
BseMII	CTCAG	3 cut(s)	462, 871, 888
BseNI	ACTGG	2 cut(s)	288, 748
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	263, 273, 755
BshNI	GGYRCC	1 cut(s)	746
BshTI	ACCGGT	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	5 cut(s)	57, 83, 257, 280, 356
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	3 cut(s)	160, 256, 280
BsmAI	GTCTC	1 cut(s)	185
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	263, 273, 755
Bsp119I	TTCGAA	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	22, 39, 403, 415
Bsp1720I	GCTNAGC	1 cut(s)	852
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	7 cut(s)	227, 237, 240, 260, 380, 411, 738
BspANI	GGCC	3 cut(s)	263, 273, 755
BspCNI	CTCAG	3 cut(s)	463, 870, 889
BspHI	TCATGA	1 cut(s)	926
BspLI	GGNNCC	4 cut(s)	124, 286, 748, 756
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	47, 411
BspT104I	TTCGAA	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	746
BspTI	CTTAAG	1 cut(s)	875
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	288, 748
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	159, 280, 750, 805
BssMI	GATC	4 cut(s)	22, 39, 403, 415
BssNAI	GTATAC	1 cut(s)	903
BssT1I	CCWWGG	2 cut(s)	159, 805
Bst1107I	GTATAC	1 cut(s)	903
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	222, 907
Bst6I	CTCTTC	1 cut(s)	645
BstAFI	CTTAAG	1 cut(s)	875
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstBAI	YACGTR	2 cut(s)	668, 704
BstBI	TTCGAA	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	651, 872
BstDEI	CTNAG	5 cut(s)	471, 799, 852, 857, 897
BstDSI	CCRYGG	2 cut(s)	159, 750
BstF5I	GGATG	2 cut(s)	784, 831
BstKTI	GATC	4 cut(s)	25, 42, 406, 418
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	4 cut(s)	22, 39, 403, 415
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	2 cut(s)	629, 746
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	3 cut(s)	46, 279, 354
BstSFI	CTRYAG	2 cut(s)	558, 834
BstZ17I	GTATAC	1 cut(s)	903
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	3 cut(s)	263, 273, 755
BtgI	CCRYGG	2 cut(s)	159, 750
BtgZI	GCGATG	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	784, 831
BtsIMutI	CAGTG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	651, 872
CciI	TCATGA	1 cut(s)	926
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	262, 285, 754
Csp6I	GTAC	2 cut(s)	708, 861
CspAI	ACCGGT	1 cut(s)	56
CviAII	CATG	5 cut(s)	160, 208, 393, 407, 927
CviQI	GTAC	2 cut(s)	708, 861
DdeI	CTNAG	5 cut(s)	471, 799, 852, 857, 897
DpnI	GATC	4 cut(s)	24, 41, 405, 417
DpnII	GATC	4 cut(s)	22, 39, 403, 415
DrdI	GACNNNNNNGTC	1 cut(s)	538
DriI	GACNNNNNGTC	1 cut(s)	553
DseDI	GACNNNNNNGTC	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	645
Eam1105I	GACNNNNNGTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	426
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	159, 805
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	591, 665
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	159, 805
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	159, 805
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	5 cut(s)	163, 211, 396, 410, 930
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	159, 207, 392, 406, 926
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	902
Fnu4HI	GCNGC	4 cut(s)	238, 241, 261, 738
FokI	GGATG	2 cut(s)	791, 838
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	4 cut(s)	238, 241, 261, 738
FspBI	CTAG	2 cut(s)	168, 806
GluI	GCNGC	4 cut(s)	238, 241, 261, 738
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	263, 273, 755
HapII	CCGG	5 cut(s)	57, 83, 257, 280, 356
Hin1II	CATG	5 cut(s)	163, 211, 396, 410, 930
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	6 cut(s)	86, 135, 539, 569, 677, 916
HpaII	CCGG	5 cut(s)	57, 83, 257, 280, 356
HphI	GGTGA	3 cut(s)	649, 899, 925
Hpy166II	GTNNAC	3 cut(s)	103, 361, 903
Hpy188I	TCNGA	2 cut(s)	74, 645
Hpy188III	TCNNGA	4 cut(s)	139, 398, 896, 927
Hpy8I	GTNNAC	3 cut(s)	103, 361, 903
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	222, 907
HpyCH4IV	ACGT	5 cut(s)	65, 105, 533, 667, 703
HpyCH4V	TGCA	4 cut(s)	350, 392, 552, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	629, 746
HpyF3I	CTNAG	5 cut(s)	471, 799, 852, 857, 897
HpySE526I	ACGT	5 cut(s)	65, 105, 533, 667, 703
Hsp92II	CATG	5 cut(s)	163, 211, 396, 410, 930
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	4 cut(s)	22, 39, 403, 415
LmnI	GCTCC	2 cut(s)	74, 122
MaeI	CTAG	2 cut(s)	168, 806
MaeII	ACGT	5 cut(s)	65, 105, 533, 667, 703
MaeIII	GTNAC	4 cut(s)	52, 466, 545, 575
MalI	GATC	4 cut(s)	24, 41, 405, 417
MboI	GATC	4 cut(s)	22, 39, 403, 415
MboII	GAAGA	2 cut(s)	632, 734
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	3 cut(s)	143, 370, 458
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	7 cut(s)	21, 136, 287, 303, 310, 394, 585
MseI	TTAA	2 cut(s)	525, 876
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	5 cut(s)	57, 83, 257, 280, 356
MspR9I	CCNGG	3 cut(s)	48, 281, 356
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	629, 746
NciI	CCSGG	2 cut(s)	281, 356
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	22, 39, 403, 415
NlaIII	CATG	5 cut(s)	163, 211, 396, 410, 930
NlaIV	GGNNCC	4 cut(s)	124, 286, 748, 756
NmuCI	GTSAC	3 cut(s)	52, 545, 575
NspI	RCATGY	1 cut(s)	396
NspV	TTCGAA	1 cut(s)	680
PagI	TCATGA	1 cut(s)	926
PfeI	GAWTC	5 cut(s)	86, 135, 569, 677, 916
PflMI	CCANNNNNTGG	1 cut(s)	160
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	4 cut(s)	239, 242, 262, 739
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Ppu21I	YACGTR	2 cut(s)	668, 704
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	4 cut(s)	124, 286, 748, 756
PspPI	GGNCC	3 cut(s)	262, 285, 754
RsaI	GTAC	2 cut(s)	709, 862
RsaNI	GTAC	2 cut(s)	708, 861
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	525, 876
SatI	GCNGC	4 cut(s)	238, 241, 261, 738
Sau3AI	GATC	4 cut(s)	22, 39, 403, 415
Sau96I	GGNCC	3 cut(s)	262, 285, 754
ScaI	AGTACT	1 cut(s)	862
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	3 cut(s)	48, 281, 356
SduI	GDGCHC	1 cut(s)	79
SfcI	CTRYAG	2 cut(s)	558, 834
SfuI	TTCGAA	1 cut(s)	680
SinI	GGWCC	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
Sse9I	AATT	3 cut(s)	143, 370, 458
SsiI	CCGC	7 cut(s)	227, 237, 240, 260, 380, 411, 738
SspMI	CTAG	2 cut(s)	168, 806
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	46, 279, 354
StyI	CCWWGG	2 cut(s)	159, 805
TaaI	ACNGT	2 cut(s)	222, 907
TaiI	ACGT	5 cut(s)	68, 108, 536, 670, 706
TaqI	TCGA	4 cut(s)	79, 89, 680, 720
TasI	AATT	3 cut(s)	143, 370, 458
TatI	WGTACW	1 cut(s)	860
TauI	GCSGC	4 cut(s)	240, 243, 263, 740
TfiI	GAWTC	5 cut(s)	86, 135, 569, 677, 916
Tru1I	TTAA	2 cut(s)	525, 876
Tru9I	TTAA	2 cut(s)	525, 876
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	3 cut(s)	52, 545, 575
Tsp45I	GTSAC	3 cut(s)	52, 545, 575
TspDTI	ATGAA	2 cut(s)	17, 915
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	160
Vha464I	CTTAAG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XmaJI	CCTAGG	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	902
XspI	CTAG	2 cut(s)	168, 806
ZrmI	AGTACT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.