Rroxscaffold_4G00314330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001173
Physical Location & Seq
Reverse (-)
38340996 .. 38341235
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314330.1

Sequence Viewer

Length: 240 bp
ATGATGGAGGGCGGTCGGATGCGGGCAATGCGGCCGGTGCTTGGTGGTGGTCTTTGTGGCGAAAGGGCCGGGTTCTCCTTCGTTCGATGGGTGGTGGTGAGGTCAACATCGCGGCCTGCTCGTGAGAGCAGCTCGGATTCGGGCCGTATGGGATCTTTTCGGCTTTCTCTGCGAGCACTTCTTGGTGGAGACCTTAGTGTGTGGGGCGACGATGGTGGAGCGCGGCGGTGGACCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.58

Weight (kDa)

11.48

Isoelectric Point (pI)

60.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 112, 223
AciI CCGC 6 cut(s) 12, 22, 31, 112, 223, 226
AclWI GGATC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 41
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 160
AoxI GGCC 4 cut(s) 32, 66, 113, 142
ApeKI GCWGC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 3 cut(s) 66, 142, 231
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 231
BauI CACGAG 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 81, 206
BceAI ACGGC 1 cut(s) 129
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 238
BisI GCNGC 4 cut(s) 32, 113, 130, 224
BlsI GCNGC 4 cut(s) 33, 114, 131, 225
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 66, 142, 231
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 9
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpuMI CCSGG 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 33
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 33
BseX3I CGGCCG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 141
Bsh1236I CGCG 2 cut(s) 112, 223
Bsh1285I CGRYCG 2 cut(s) 16, 35
BshFI GGCC 4 cut(s) 34, 68, 115, 144
BsiEI CGRYCG 2 cut(s) 16, 35
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 2 cut(s) 35, 69
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 4 cut(s) 34, 68, 115, 144
Bso31I GGTCTC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 6 cut(s) 12, 22, 31, 112, 223, 226
BspANI GGCC 4 cut(s) 34, 68, 115, 144
BspFNI CGCG 2 cut(s) 112, 223
BspPI GGATC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 1 cut(s) 152
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
BstC8I GCNNGC 3 cut(s) 24, 117, 174
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 2 cut(s) 112, 223
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 152
BstMCI CGRYCG 2 cut(s) 16, 35
BstMWI GCNNNNNNNGC 3 cut(s) 28, 37, 169
BstSCI CCNGG 1 cut(s) 68
BstUI CGCG 2 cut(s) 112, 223
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BstZI CGGCCG 1 cut(s) 32
BsuRI GGCC 4 cut(s) 34, 68, 115, 144
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 3 cut(s) 24, 117, 174
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 66, 142, 231
CviJI RGCY 6 cut(s) 34, 68, 115, 132, 144, 163
CviKI_1 RGCY 6 cut(s) 34, 68, 115, 132, 144, 163
DdeI CTNAG 1 cut(s) 194
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 32
EagI CGGCCG 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 231
Eco52I CGGCCG 1 cut(s) 32
FaiI YATR 1 cut(s) 149
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 32, 113, 130, 224
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 4 cut(s) 32, 113, 130, 224
FspBI CTAG 1 cut(s) 238
GlaI GCGC 1 cut(s) 222
GluI GCNGC 4 cut(s) 32, 113, 130, 224
HaeIII GGCC 4 cut(s) 34, 68, 115, 144
HapII CCGG 2 cut(s) 35, 69
HhaI GCGC 1 cut(s) 223
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 1 cut(s) 137
HpaII CCGG 2 cut(s) 35, 69
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 105, 231
Hpy188I TCNGA 2 cut(s) 18, 136
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 105, 231
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 37, 169
HpyF3I CTNAG 1 cut(s) 194
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 3 cut(s) 48, 82, 129
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 9
MaeI CTAG 1 cut(s) 238
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 178
MnlI CCTC 1 cut(s) 93
MspI CCGG 2 cut(s) 35, 69
MspR9I CCNGG 1 cut(s) 70
MvnI CGCG 2 cut(s) 112, 223
MwoI GCNNNNNNNGC 3 cut(s) 28, 37, 169
NciI CCSGG 1 cut(s) 70
NdeII GATC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 4 cut(s) 33, 114, 131, 225
PspPI GGNCC 3 cut(s) 66, 142, 231
PsuI RGATCY 1 cut(s) 152
SatI GCNGC 4 cut(s) 32, 113, 130, 224
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 3 cut(s) 66, 142, 231
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 178
SetI ASST 3 cut(s) 104, 134, 195
SfaNI GCATC 1 cut(s) 9
SinI GGWCC 1 cut(s) 231
SsiI CCGC 6 cut(s) 12, 22, 31, 112, 223, 226
SspMI CTAG 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 68
TaqI TCGA 1 cut(s) 85
TauI GCSGC 3 cut(s) 34, 115, 226
TfiI GAWTC 1 cut(s) 137
TseI GCWGC 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 231
XspI CTAG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.