RchiOBHm_Chr4g0423981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001173
Physical Location & Seq
Forward (+)
49522288 .. 49522923
636 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39331

Sequence Viewer

Length: 636 bp
ATGGTTGCTAGCGGTGGTTGGTTGTGGTTTGGTTGGTGGCTGCCATTGGTTGATCTGGTTTGGGTCGCAGGTGATCTGGTCGGAGTGATGATGGAGAGCTATCGGACTTGGGCGATTTGGTTGGTGCTTGGTGGTGGTCCTGTGGCGAAAGGGCTGGGTTCTCCTTCGTTCGATGGGTGGTGGCTGAGGTTGACATCTAGGCCTGCTCGTGAGAGCAGCCCAGATCCGGGCTGTACGGGATCTTTTCCGGCTTTCTCTGCGAGCACTCCTTGGTGGAGACCTTGGTGCGTGGGGCGACGATGGTGGGGCGCTAGCGGTGGACTGACTAGGGCGGTAGTGGTCTGGAGGCAGTGCGGCGGAACCGGTGATGCCACGTTGGTGGGTCTAGTGCAAGGTTTGTTGGCCTCGCTAATGGGCTGCAGTGAGTCCATTATTGAGTGGGCTAGAGAAGCTTTGTGGGCTCAGTTAGGCCCAGAATTAATTATAGTTTGTTTTACTATTTTAGTTTATTTTAATTTTCTAGTTAGCAATGGCTTTATGCCGAAAATAAGTCCCTATCGCATTTTGGTAGGGAGATGTGGGCTTTCGCCAGGTATGCACATTCAATGTGCCTTGTCTGGCTTAGCGAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.05

Weight (kDa)

8.8

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AciI CCGC 5 cut(s) 12, 315, 332, 354, 357
AclWI GGATC 2 cut(s) 218, 247
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 226, 227
AgeI ACCGGT 1 cut(s) 362
AgsI TTSAA 1 cut(s) 605
AjnI CCWGG 1 cut(s) 589
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 2 cut(s) 99, 452
AluI AGCT 2 cut(s) 99, 452
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 2 cut(s) 218, 247
AoxI GGCC 3 cut(s) 200, 402, 469
ApeKI GCWGC 3 cut(s) 40, 216, 417
AseI ATTAAT 1 cut(s) 479
AsiGI ACCGGT 1 cut(s) 362
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 137, 470
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 83, 377
AsuNHI GCTAGC 2 cut(s) 8, 311
AvaII GGWCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 463
BauI CACGAG 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 266
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 27, 228, 404
BccI CCATC 3 cut(s) 85, 167, 294
BciT130I CCWGG 1 cut(s) 591
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 7 cut(s) 9, 198, 312, 327, 386, 444, 521
BfmI CTRYAG 1 cut(s) 418
BfoI RGCGCY 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 4 cut(s) 41, 217, 355, 418
BlpI GCTNAGC 1 cut(s) 622
BlsI GCNGC 4 cut(s) 42, 218, 356, 419
Bme1390I CCNGG 2 cut(s) 228, 591
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 137, 470
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 2 cut(s) 228, 591
BmsI GCATC 1 cut(s) 358
BmtI GCTAGC 2 cut(s) 12, 315
BpmI CTGGAG 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 622
BpuMI CCSGG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 269, 281
BsaWI WCCGGW 1 cut(s) 362
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 227
Bse118I RCCGGY 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 535
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 269, 281
BseLI CCNNNNNNNGG 2 cut(s) 226, 227
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 2 cut(s) 176, 476
BseXI GCAGC 3 cut(s) 27, 228, 404
BseYI CCCAGC 1 cut(s) 154
BshFI GGCC 3 cut(s) 202, 404, 471
BshTI ACCGGT 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 266
BsiSI CCGG 3 cut(s) 227, 248, 363
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 2 cut(s) 226, 227
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 537
BsnI GGCC 3 cut(s) 202, 404, 471
Bso31I GGTCTC 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 266, 463
Bsp143I GATC 4 cut(s) 52, 73, 223, 239
Bsp1720I GCTNAGC 1 cut(s) 622
BspACI CCGC 5 cut(s) 12, 315, 332, 354, 357
BspANI GGCC 3 cut(s) 202, 404, 471
BspCNI CTCAG 2 cut(s) 177, 475
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 59
BspOI GCTAGC 2 cut(s) 12, 315
BspPI GGATC 2 cut(s) 218, 247
BspTNI GGTCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 2 cut(s) 269, 281
BssMI GATC 4 cut(s) 52, 73, 223, 239
BssSI CACGAG 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 269, 281
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 591
BstC8I GCNNGC 4 cut(s) 10, 204, 262, 313
BstDEI CTNAG 3 cut(s) 185, 462, 622
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 4 cut(s) 55, 76, 226, 242
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 4 cut(s) 52, 73, 223, 239
BstMWI GCNNNNNNNGC 4 cut(s) 257, 449, 458, 595
BstNI CCWGG 1 cut(s) 591
BstSCI CCNGG 2 cut(s) 226, 589
BstSFI CTRYAG 1 cut(s) 418
BstV1I GCAGC 3 cut(s) 27, 228, 404
BstX2I RGATCY 2 cut(s) 223, 239
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 2 cut(s) 223, 239
BsuRI GGCC 3 cut(s) 202, 404, 471
BtsI GCAGTG 2 cut(s) 356, 427
BtsIMutI CAGTG 2 cut(s) 356, 427
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 4 cut(s) 10, 204, 262, 313
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 137, 470
Csp6I GTAC 1 cut(s) 234
CspAI ACCGGT 1 cut(s) 362
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 3 cut(s) 185, 462, 622
DpnI GATC 4 cut(s) 54, 75, 225, 241
DpnII GATC 4 cut(s) 52, 73, 223, 239
EciI GGCGGA 1 cut(s) 372
Eco130I CCWWGG 2 cut(s) 269, 281
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 463
Eco31I GGTCTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 269, 281
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 2 cut(s) 269, 281
FaiI YATR 3 cut(s) 485, 539, 596
FaqI GGGAC 1 cut(s) 537
Fnu4HI GCNGC 4 cut(s) 41, 217, 355, 418
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 4 cut(s) 41, 217, 355, 418
FspBI CTAG 7 cut(s) 9, 198, 312, 327, 386, 444, 521
GlaI GCGC 1 cut(s) 310
GluI GCNGC 4 cut(s) 41, 217, 355, 418
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 364
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 3 cut(s) 202, 404, 471
HapII CCGG 3 cut(s) 227, 248, 363
HhaI GCGC 1 cut(s) 311
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 1 cut(s) 425
HpaII CCGG 3 cut(s) 227, 248, 363
HphI GGTGA 2 cut(s) 83, 377
Hpy166II GTNNAC 2 cut(s) 192, 320
Hpy188I TCNGA 2 cut(s) 83, 105
Hpy188III TCNNGA 2 cut(s) 209, 343
Hpy8I GTNNAC 2 cut(s) 192, 320
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 3 cut(s) 391, 420, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 449, 458, 595
HpyF3I CTNAG 3 cut(s) 185, 462, 622
HpySE526I ACGT 1 cut(s) 374
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 4 cut(s) 52, 73, 223, 239
Lsp1109I GCAGC 3 cut(s) 27, 228, 404
LweI GCATC 1 cut(s) 358
MaeI CTAG 7 cut(s) 9, 198, 312, 327, 386, 444, 521
MaeII ACGT 1 cut(s) 374
MalI GATC 4 cut(s) 54, 75, 225, 241
MboI GATC 4 cut(s) 52, 73, 223, 239
MflI RGATCY 2 cut(s) 223, 239
MhlI GDGCHC 2 cut(s) 266, 463
MluCI AATT 3 cut(s) 476, 480, 514
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 4 cut(s) 180, 339, 415, 621
MseI TTAA 2 cut(s) 479, 513
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 3 cut(s) 227, 248, 363
MspR9I CCNGG 2 cut(s) 228, 591
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 4 cut(s) 257, 449, 458, 595
NciI CCSGG 1 cut(s) 228
NdeII GATC 4 cut(s) 52, 73, 223, 239
NheI GCTAGC 2 cut(s) 8, 311
NlaIV GGNNCC 1 cut(s) 361
OliI CACNNNNGTG 1 cut(s) 377
PaqCI CACCTGC 1 cut(s) 59
PceI AGGCCT 1 cut(s) 202
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 4 cut(s) 42, 218, 356, 419
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PshBI ATTAAT 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 589
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 2 cut(s) 137, 470
PstI CTGCAG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 223, 239
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 2 cut(s) 479, 513
SatI GCNGC 4 cut(s) 41, 217, 355, 418
Sau3AI GATC 4 cut(s) 52, 73, 223, 239
Sau96I GGNCC 2 cut(s) 137, 470
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 2 cut(s) 228, 591
SduI GDGCHC 2 cut(s) 266, 463
SetI ASST 9 cut(s) 73, 101, 191, 283, 377, 397, 454, 595, 632
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 418
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 3 cut(s) 476, 480, 514
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 5 cut(s) 12, 315, 332, 354, 357
SspMI CTAG 7 cut(s) 9, 198, 312, 327, 386, 444, 521
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 226, 589
StyI CCWWGG 2 cut(s) 269, 281
TaiI ACGT 1 cut(s) 377
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 476, 480, 514
TauI GCSGC 1 cut(s) 357
Tru1I TTAA 2 cut(s) 479, 513
Tru9I TTAA 2 cut(s) 479, 513
TscAI CASTG 2 cut(s) 356, 427
TseI GCWGC 3 cut(s) 40, 216, 417
TspRI CASTG 2 cut(s) 356, 427
VpaK11BI GGWCC 1 cut(s) 137
VspI ATTAAT 1 cut(s) 479
XspI CTAG 7 cut(s) 9, 198, 312, 327, 386, 444, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.