Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

76768503 .. 76768921

Gene Structure 419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGGCGGTGGCCGCCGCCAGAGCTGCTGTGATTCTGTACTACATGTTTGGCCGGAGAGCGTCGTCCAAGCGGAGATTTCTCCAAGTCGAGATCAGCGAGGAAGAGGCTTGTCGGCGACCGGCTCAGGCGCCGGCCACGTGGATCGAGTCAATGTCCACCTTGTCTGATACGCTGTGTTTCACTTACTCTGAGACCATAGGGAAATGGCCTATCAGTGACTTGATCTTCAGCATTAACTACCTCATGTGTAGGCAGGGGAATTTACAAGTGGCGAGTGTGTATGCTGGTAGTGATTGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

101

Amino Acids

11.26

Weight (kDa)

7.63

Isoelectric Point (pI)

78.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	39 - 97	2.1e-10	Lipase 3 N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AciI	CCGC	5 cut(s)	5, 8, 15, 18, 73
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	3 cut(s)	12, 52, 135
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	214
AcvI	CACGTG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	45
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	4 cut(s)	12, 52, 135, 209
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	130
BbrPI	CACGTG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	4 cut(s)	6, 15, 18, 27
BlsI	GCNGC	4 cut(s)	7, 16, 19, 28
BmiI	GGNNCC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	188
Bse118I	RCCGGY	2 cut(s)	121, 133
BseMII	CTCAG	2 cut(s)	140, 183
BseXI	GCAGC	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	4 cut(s)	14, 54, 137, 211
BshNI	GGYRCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	55, 122, 134
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	14, 54, 137, 211
Bso31I	GGTCTC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	93, 144, 225
BspACI	CCGC	5 cut(s)	5, 8, 15, 18, 73
BspANI	GGCC	4 cut(s)	14, 54, 137, 211
BspCNI	CTCAG	2 cut(s)	139, 184
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	2 cut(s)	121, 133
BssAI	RCCGGY	2 cut(s)	121, 133
BssMI	GATC	3 cut(s)	93, 144, 225
BssNI	GRCGYC	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	126, 192
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	96, 147, 228
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	93, 144, 225
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 23, 26
BstNSI	RCATGY	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	13
BsuRI	GGCC	4 cut(s)	14, 54, 137, 211
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	121, 133
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	2 cut(s)	46, 247
CviJI	RGCY	7 cut(s)	14, 26, 54, 110, 125, 137, 211
CviKI_1	RGCY	7 cut(s)	14, 26, 54, 110, 125, 137, 211
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	126, 192
DinI	GGCGCC	1 cut(s)	132
DpnI	GATC	3 cut(s)	95, 146, 227
DpnII	GATC	3 cut(s)	93, 144, 225
EaeI	YGGCCR	3 cut(s)	12, 52, 135
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	214
Eco72I	CACGTG	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	132
EheI	GGCGCC	1 cut(s)	132
FaeI	CATG	2 cut(s)	49, 250
FaiI	YATR	4 cut(s)	47, 200, 248, 285
FatI	CATG	2 cut(s)	45, 246
Fnu4HI	GCNGC	4 cut(s)	6, 15, 18, 27
Fsp4HI	GCNGC	4 cut(s)	6, 15, 18, 27
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	4 cut(s)	6, 15, 18, 27
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	4 cut(s)	14, 54, 137, 211
HapII	CCGG	3 cut(s)	55, 122, 134
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	49, 250
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	34, 149
HpaII	CCGG	3 cut(s)	55, 122, 134
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	169, 193
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 23, 26
HpyF3I	CTNAG	2 cut(s)	126, 192
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	49, 250
HspAI	GCGC	1 cut(s)	131
KasI	GGCGCC	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	93, 144, 225
LpnPI	CCDG	7 cut(s)	34, 68, 113, 135, 147, 242, 273
Lsp1109I	GCAGC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	95, 146, 227
MboI	GATC	3 cut(s)	93, 144, 225
MboII	GAAGA	2 cut(s)	116, 220
MluCI	AATT	1 cut(s)	262
Mly113I	GGCGCC	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	94, 100, 254
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	1 cut(s)	237
MspI	CCGG	3 cut(s)	55, 122, 134
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 23, 26
NaeI	GCCGGC	1 cut(s)	135
NarI	GGCGCC	1 cut(s)	131
NdeII	GATC	3 cut(s)	93, 144, 225
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	49, 250
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	7, 16, 19, 28
PleI	GAGTC	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	134
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	141
PscI	ACATGT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	4 cut(s)	6, 15, 18, 27
Sau3AI	GATC	3 cut(s)	93, 144, 225
SchI	GAGTC	1 cut(s)	158
SetI	ASST	4 cut(s)	28, 143, 164, 246
SfoI	GGCGCC	1 cut(s)	132
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	5 cut(s)	5, 8, 15, 18, 73
SspDI	GGCGCC	1 cut(s)	130
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	90, 147
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	3 cut(s)	8, 17, 20
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	218
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.