Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016022.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

1244 .. 2588

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016022.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggctgcgaccaccgccgccggagctgatgtgattttgtactacatgtttggccggagagtgtcgtcgaagcggagatttctccaagtcgagatcgacgaggaggaggctttctcggcgacaggctcaggcgccggccacgtggatcgagtcaatgtccaccttgtcagatacgctgttatcaaagatacactaactaccacaactggtgcggtggcccctttccaccattcggttttggatgatggtggaataagcaacttagtcctaggatatgctcactatgggatggttgctacagcccattggatttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

105

Amino Acids

11.31

Weight (kDa)

6.26

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AciI	CCGC	4 cut(s)	15, 18, 73, 212
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	52, 136
AcvI	CACGTG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	45
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	3 cut(s)	52, 136, 216
ApeKI	GCWGC	1 cut(s)	5
AspA2I	CCTAGG	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	217
AvrII	CCTAGG	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	131
BbrPI	CACGTG	1 cut(s)	142
BccI	CCATC	2 cut(s)	239, 283
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	135
BisI	GCNGC	2 cut(s)	6, 18
BlnI	CCTAGG	1 cut(s)	268
BlsI	GCNGC	2 cut(s)	7, 19
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	133, 219
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	247, 294
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	116, 119
BshFI	GGCC	3 cut(s)	54, 138, 218
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	21, 55, 135
BslI	CCNNNNNNNGG	1 cut(s)	232
BsnI	GGCC	3 cut(s)	54, 138, 218
Bsp143I	GATC	2 cut(s)	93, 145
BspACI	CCGC	4 cut(s)	15, 18, 73, 212
BspANI	GGCC	3 cut(s)	54, 138, 218
BspCNI	CTCAG	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	133, 219
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	93, 145
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	127, 262
BstF5I	GGATG	2 cut(s)	247, 294
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	96, 148
BstMBI	GATC	2 cut(s)	93, 145
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 23, 116
BstNSI	RCATGY	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	54, 138, 218
BtsCI	GGATG	2 cut(s)	247, 294
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	8 cut(s)	5, 26, 54, 110, 126, 138, 218, 302
CviKI_1	RGCY	8 cut(s)	5, 26, 54, 110, 126, 138, 218, 302
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	127, 262
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	95, 147
DpnII	GATC	2 cut(s)	93, 145
EaeI	YGGCCR	2 cut(s)	52, 136
Eco130I	CCWWGG	1 cut(s)	268
Eco72I	CACGTG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	268
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	1 cut(s)	49
FaiI	YATR	3 cut(s)	47, 276, 285
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	6, 18
FokI	GGATG	2 cut(s)	254, 301
Fsp4HI	GCNGC	2 cut(s)	6, 18
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	6, 18
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	54, 138, 218
HapII	CCGG	3 cut(s)	21, 55, 135
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	3 cut(s)	21, 55, 135
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	70, 101
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 23, 116
HpyF3I	CTNAG	2 cut(s)	127, 262
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	93, 145
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	34, 68, 108, 114, 148, 192
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	141
MalI	GATC	2 cut(s)	95, 147
MboI	GATC	2 cut(s)	93, 145
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	94, 97, 100
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	1 cut(s)	316
MspI	CCGG	3 cut(s)	21, 55, 135
MwoI	GCNNNNNNNGC	3 cut(s)	14, 23, 116
NaeI	GCCGGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	93, 145
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	133, 219
NmeAIII	GCCGAG	1 cut(s)	95
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	7, 19
PleI	GAGTC	1 cut(s)	158
PluTI	GGCGCC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	158
Ppu21I	YACGTR	1 cut(s)	142
PscI	ACATGT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	133, 219
PspPI	GGNCC	1 cut(s)	217
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	2 cut(s)	6, 18
Sau3AI	GATC	2 cut(s)	93, 145
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	159
SetI	ASST	3 cut(s)	28, 144, 165
SfcI	CTRYAG	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	133
SsiI	CCGC	4 cut(s)	15, 18, 73, 212
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	268
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	4 cut(s)	68, 90, 96, 148
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TseI	GCWGC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	49
XmaJI	CCTAGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.