Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

55688677 .. 55689993

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG332300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCCACCTTGTCTGATACGCTGTGTTTCACTTACTCTGAGACTCTAGGGAAATGGCCGATCGGTGACTTGGCCTTCGGCATTAACTACCTCATGCGTAGGCAGGGGAATTTACAAGTGGCGAGTGTGTATGCTGAGTCCGGCGGTTTCTCTATGGAAGATGTCCTTTTTCAGAAGCCCAAGGCTGCGCTTCTGAAGCCTGCGTTCACCATTCTACGTGATAAAGATTCAAAATGCTTTCTTATGTTGATACGTGGTACACATAGTATCAAAGATACACTAACTGCCACAACTGGTGCAGTGGCCCCTTTCCACCATTCGGTTTTGGATGATGGTGGAATAAACAACTTAGTCCTAGGATATGCTCACTGTGGGATGGTTTCTGCAGCCCGTTGGATTGCTCAGCTCAGTACTCCTTGCTTGCTTAAGGCTCTTGGTGAATATCCTGAGTATACAGTAAAGGTGAATGCCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

159

Amino Acids

17.31

Weight (kDa)

7.68

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	2 - 47	1.1e-08	Lipase 3 N-terminal region
Lipase_3	PF01764	82 - 155	5.9e-07	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	452
AciI	CCGC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	259, 412
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	231
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	3 cut(s)	56, 72, 303
ApeKI	GCWGC	2 cut(s)	185, 386
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspA2I	CCTAGG	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	4 cut(s)	77, 199, 449, 475
AvrII	CCTAGG	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	172, 398
BccI	CCATC	2 cut(s)	326, 370
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	47, 356
BfmI	CTRYAG	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	2 cut(s)	186, 387
BlnI	CCTAGG	1 cut(s)	355
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	2 cut(s)	187, 388
BmcAI	AGTACT	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	402
BsaAI	YACGTR	2 cut(s)	218, 254
BsaJI	CCNNGG	2 cut(s)	180, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	180, 355
BseGI	GGATG	2 cut(s)	334, 381
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	5 cut(s)	30, 126, 416, 421, 438
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	172, 398
BsgI	GTGCAG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	58, 74, 305
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	58, 74, 305
Bsp143I	GATC	1 cut(s)	60
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	3 cut(s)	58, 74, 305
BspCNI	CTCAG	5 cut(s)	31, 127, 415, 420, 439
BspHI	TCATGA	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	180, 355
BssMI	GATC	1 cut(s)	60
BssNAI	GTATAC	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	180, 355
Bst1107I	GTATAC	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	371, 457
BstAFI	CTTAAG	1 cut(s)	425
BstBAI	YACGTR	2 cut(s)	218, 254
BstC8I	GCNNGC	2 cut(s)	201, 422
BstDEI	CTNAG	6 cut(s)	39, 135, 349, 402, 407, 447
BstF5I	GGATG	2 cut(s)	334, 381
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	172, 398
BstZ17I	GTATAC	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	58, 74, 305
BtsCI	GGATG	2 cut(s)	334, 381
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 367
Cac8I	GCNNGC	2 cut(s)	201, 422
CciI	TCATGA	1 cut(s)	476
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	258, 411
CviAII	CATG	2 cut(s)	94, 477
CviJI	RGCY	9 cut(s)	58, 74, 178, 185, 199, 305, 389, 406, 431
CviKI_1	RGCY	9 cut(s)	58, 74, 178, 185, 199, 305, 389, 406, 431
CviQI	GTAC	2 cut(s)	258, 411
DdeI	CTNAG	6 cut(s)	39, 135, 349, 402, 407, 447
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	180, 355
Eco57I	CTGAAG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	180, 355
ErhI	CCWWGG	2 cut(s)	180, 355
FaeI	CATG	2 cut(s)	97, 480
FaiI	YATR	8 cut(s)	95, 132, 155, 245, 264, 363, 453, 478
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FatI	CATG	2 cut(s)	93, 476
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	2 cut(s)	186, 387
FokI	GGATG	2 cut(s)	341, 388
Fsp4HI	GCNGC	2 cut(s)	186, 387
FspBI	CTAG	2 cut(s)	47, 356
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	2 cut(s)	186, 387
HaeIII	GGCC	3 cut(s)	58, 74, 305
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	97, 480
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	3 cut(s)	43, 137, 227
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	77, 199, 449, 475
Hpy166II	GTNNAC	4 cut(s)	6, 207, 260, 453
Hpy188I	TCNGA	4 cut(s)	16, 40, 174, 195
Hpy188III	TCNNGA	2 cut(s)	446, 477
Hpy8I	GTNNAC	4 cut(s)	6, 207, 260, 453
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	371, 457
HpyCH4IV	ACGT	2 cut(s)	217, 253
HpyCH4V	TGCA	2 cut(s)	299, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	6 cut(s)	39, 135, 349, 402, 407, 447
HpySE526I	ACGT	2 cut(s)	217, 253
Hsp92II	CATG	2 cut(s)	97, 480
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	89, 154, 213, 279, 459
Lsp1109I	GCAGC	2 cut(s)	172, 398
MaeI	CTAG	2 cut(s)	47, 356
MaeII	ACGT	2 cut(s)	217, 253
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	1 cut(s)	170
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	37, 146
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	1 cut(s)	101
MseI	TTAA	2 cut(s)	84, 426
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	2 cut(s)	97, 480
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	65
PagI	TCATGA	1 cut(s)	476
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	187, 388
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	2 cut(s)	37, 145
PpsI	GAGTC	2 cut(s)	37, 145
Ppu21I	YACGTR	2 cut(s)	218, 254
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	388
PvuI	CGATCG	1 cut(s)	63
RsaI	GTAC	2 cut(s)	259, 412
RsaNI	GTAC	2 cut(s)	258, 411
SaqAI	TTAA	2 cut(s)	84, 426
SatI	GCNGC	2 cut(s)	186, 387
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	412
SchI	GAGTC	2 cut(s)	37, 146
SetI	ASST	6 cut(s)	11, 93, 220, 256, 408, 465
SfcI	CTRYAG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	47, 356
StyI	CCWWGG	2 cut(s)	180, 355
TaaI	ACNGT	2 cut(s)	371, 457
TaiI	ACGT	2 cut(s)	220, 256
TasI	AATT	1 cut(s)	109
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	84, 426
Tru9I	TTAA	2 cut(s)	84, 426
TscAI	CASTG	2 cut(s)	306, 374
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	185, 386
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	2 cut(s)	306, 374
Vha464I	CTTAAG	1 cut(s)	425
XapI	RAATTY	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	2 cut(s)	47, 356
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.