Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

47608809 .. 47617545

Gene Structure 8737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2883 bp

ATGGCGGCGGGGACAATGGCGACCGCCGCCGGAGCTGCTGTGATTCTGTACTACATGTTTGGCCGGAGAGCGTCGTCGAAGGACGGCGTTGAGGAGGACGACGACGACGACAATCGGAGCGGAGATTTCTCCAAGTCGAGATCGGCTAGGAGGAGGCTTTCTCGGCGACCGGCTCAGGCGCCGGCCACGTGGATCGAGTCAATGTCCACCTTGTCCGATACGCTGCGTTTCACTTACTCTGAGACTCTAGGGAAATGGCCGATCGGCGACTTGGCCTTCGGCATTAACTACCTCATGCGTAGGCAGGGGAATTTACAAGTGGCGAGTGTGTATGCTGGTAGTGATAGTGTGCAGCTCAAAGGCGCTAAGATTATTGAGGAACTAAATTATTACTTGAAGCTGTTGACGCTTTGTTATCTGTTTTCCAAGAAGCCGTTTCCGGTTTTTTTAGAGTCCGGCGGTTTCTCTATGGAAGATGTCCTTCTTCAGAAGCCCAAGGCTGCGCTTCTGAAGCCTGCGTTCACCATTCTACGTGATAAAGATTCAAAATGCTTTCTTCTGTTGATACGTGGTACACATAGTATCAAAGATACACTAACTGCTGCAACTGGTGCAGTGGCCCCTTTCCACCATTCGGTTTTGCATGATGGTGGAATAAGCAACTTAGTCCTAGGATATGCTCACTGTGGGATGGTTGCTGCAGCCCGTTGGATTGCTAAGCTCAGTACTCCTTGCTTGCTTAAGGCTCTTGGTGAATATCCTGAGTATACAGTAAAGGTTGTTGGACATTCACTGGGGGGTGGTACAGCTGCTTTGTTAACCTACATTCTCCGGGAACAGAGAGAATTATCTTCAACTGCCTGTATAACAATGGAGTTGGCAGAATCTGGCAAGCACTTCATCACTACTATCATCAATGGCTCTGACCTGGTGCCTACATTCTCAGCAGCTTCTGTTGATGACCTCCGCTCTGAGGTCACAGCTTCATCTTGGTTAAATGATTTGCGGGATCAGGTTGAGCATACACGTGTTTTGAATGTTGTTTATCGTTCAGCAACTGCTCTGGGTTCTCGTCTACCATCTATAGCTAGTGCAAAAGCCAGGGTTGCTGGTGCAGGTGCACTATTGAGGCCAGTATCCAGCAGTACTCAGGTTGTGATGAAGCGTGCACAAAATGTTGCCCTAGCTGTTGTTAGAACCCGTTCATCTATATCATCTTGGTCTTGCATGGGTGCACGTCGCCGTAATGTGGTTCAATCATTGAACTCTACCATGGGTGATTCACATGAAGCTTCTGTAATATGTGAAAGGGATTCTGAATCTCTGGCCGAAGGAACAACCGCTGACCCAATGCTGGATAATTTGGTGTGTAGTTCTGGTGGATCAGGTCATGATGATACTGATGAAGAGGAGCAGCTTTTGCCAGTGCATGAAGATCCAACCACATCTGCTGTCGAAGACATTACTGAAGGTGAATTGTGGTATGAACTGGAGAAGGAGCTTACGAGGCAGGAGAATGAAATCAATGTTCAGGCTAAGGAGGAAGAAGCTGCTGCAGTTAAAGAAATAACCGAGGAAGAAAATATGCTGGTTGATGTTGCAGAAAGCAATACGCCAATCTCTTCCGCAGACATTTCTGAGAGCCACCGGTTCTATCCCCCTGGCAGAATCATGCACATTATATCAGTAACCTCATCTGATTCTGCGGATTTAGACCATGATGGACCGAGTGAAGAGCATGTTGGAGTTATGGTGCTGTTTCCATCTTTCCTTGATGGGTTGGGAAGAACCATCTCGATCAAGAAGACCAAGAATTGCCATGGTGATGTGGCAAAGGAGACTGCAGAAGCATTGGCGAAGGAAGCAAAAAAGAATGAGCTGGTTTTGAGTTCTTCTGGGATTGTTGACTCTGACAAGTCTAACAATTTTTCTTCTGTTTGCTCCAAGAGAGGCCAAAAGGGTATCAATCAGGATTGCTTAGTCATTTGGGAGGAATTTGGGTGCCAAGAAGACATGATCTTTTGTGGAGTGTTTGATGGGCATGGACAGTGGGGACATCTTGTTAGCAAAAGGGTCAGGCAATCTCTGCCTTCTTCTTTGTTGTGCAATTGGCAACAAACTCTCAGTTTAACATCACTTGACCTGAATTTTAAAATGGAGATGGATCGAAATCTCCATCGATACGATACATGGAAGCAGTCCTTTCTTAAAACATACGCTGCCATGGACCAGGAGCTTAAGCATTCTTCTAAAGTCGATTCCTATCGAAGTGGTACTACAGCGTTGACAATTATTAAGCAGGGTGAACTTCTCATCATAGCACATGTTGGTGATTCTCGGGCTGTTTTGGCCTCCACTTCAGAAGATGGGAGCTTGGTACCTATCCAGCTTACAGTCGACTTCAAGCCTAACTTACCTCAGGAGGCTGAGAGAATCAGAAGGTCCAATGGACGAGTGTTTTGTCTACATGATGAACCGGGGACTTATAGGGTGTGGATGCCAAATGGCAAGACACCAGGTCTGGCAGTATCAAGAGCTTTTGGTGACTATTGTGTTAAGGACTTTGGGCTTATTTCTGTGCCTGATGTGAGCCAAAGATACATAACCAGCAAAGACCAGTTTGTCATTCTAGCAACAGATGGGGTATGGGATGTTATCTCCAACAAAGAAGCTATACAGATAGTTTATTCGGCACCAGATAGGAACAAAGCAGCAAAAAGACTGGTGGCATGTGCTGCTCTTGCATGGAAGTCTAAGAGAAGAGGCATTGCAATGGATGACATCTCCGCTATTTGCCTGTTCTTTCACCCTAACTCATCATCGCAACAAACCAACCCTTTGGTCTCTGAATATACTGGTGTGAAGACATCTGGGTGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

960

Amino Acids

105.09

Weight (kDa)

5.87

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	52 - 132	2e-16	Lipase 3 N-terminal region
Lipase_3	PF01764	187 - 316	2.7e-19	Lipase (class 3)
PP2C	PF00481	657 - 911	1.3e-40	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1106
AasI	GACNNNNNNGTC	1 cut(s)	2621
Acc36I	ACCTGC	1 cut(s)	1106
Acc65I	GGTACC	1 cut(s)	2377
AccB1I	GGYRCC	5 cut(s)	178, 931, 2001, 2377, 2692
AccBSI	CCGCTC	2 cut(s)	120, 969
AccI	GTMKAC	4 cut(s)	767, 1075, 2397, 2464
AclWI	GGATC	5 cut(s)	200, 1017, 1390, 1430, 2172
AcoI	YGGCCR	4 cut(s)	61, 183, 257, 1326
AcsI	RAATTY	3 cut(s)	310, 1994, 2146
AcuI	CTGAAG	4 cut(s)	470, 530, 1488, 2343
AcvI	CACGTG	2 cut(s)	189, 1028
AcyI	GRCGYC	1 cut(s)	179
AfaI	GTAC	7 cut(s)	50, 574, 727, 805, 1147, 2275, 2379
AfiI	CCNNNNNNNGG	4 cut(s)	634, 973, 1249, 1354
AflII	CTTAAG	2 cut(s)	740, 2237
AflIII	ACRYGT	4 cut(s)	54, 1025, 1027, 2323
AgeI	ACCGGT	1 cut(s)	1647
AgsI	TTSAA	7 cut(s)	397, 546, 855, 1036, 1256, 1264, 2404
AhdI	GACNNNNNGTC	1 cut(s)	2517
AjiI	CACGTC	1 cut(s)	1238
AjnI	CCWGG	5 cut(s)	927, 1100, 1660, 2229, 2515
AjuI	GAANNNNNNNTTGG	2 cut(s)	1725, 1757
Alw21I	GWGCWC	3 cut(s)	1123, 1171, 1237
Alw26I	GTCTC	3 cut(s)	236, 1832, 2848
Alw44I	GTGCAC	3 cut(s)	1119, 1167, 1233
AlwI	GGATC	5 cut(s)	200, 1017, 1390, 1430, 2172
AlwNI	CAGNNNCTG	3 cut(s)	887, 953, 1058
Ama87I	CYCGRG	1 cut(s)	2337
AoxI	GGCC	9 cut(s)	61, 183, 257, 273, 618, 1130, 1326, 1951, 2349
ApaLI	GTGCAC	3 cut(s)	1119, 1167, 1233
ApoI	RAATTY	3 cut(s)	310, 1994, 2146
ArsI	GACNNNNNNTTYG	4 cut(s)	260, 292, 2442, 2474
AsiGI	ACCGGT	1 cut(s)	1647
Asp700I	GAANNNNTTC	1 cut(s)	1201
Asp718I	GGTACC	1 cut(s)	2377
AspA2I	CCTAGG	1 cut(s)	670
AspLEI	GCGC	3 cut(s)	181, 365, 505
AspS9I	GGNCC	4 cut(s)	619, 1724, 2227, 2442
AsuC2I	CCSGG	2 cut(s)	833, 2478
AsuHPI	GGTGA	9 cut(s)	514, 764, 1289, 1484, 1835, 2315, 2342, 2555, 2798
AvaI	CYCGRG	1 cut(s)	2337
AvaII	GGWCC	3 cut(s)	1724, 2227, 2442
AvrII	CCTAGG	1 cut(s)	670
AxyI	CCTNAGG	1 cut(s)	2418
BaeGI	GKGCMC	3 cut(s)	1123, 1171, 1237
BanI	GGYRCC	5 cut(s)	178, 931, 2001, 2377, 2692
BarI	GAAGNNNNNNTAC	2 cut(s)	2260, 2292
BbrPI	CACGTG	2 cut(s)	189, 1028
BbsI	GAAGAC	4 cut(s)	1464, 1811, 2016, 2870
Bbv12I	GWGCWC	3 cut(s)	1123, 1171, 1237
BceAI	ACGGC	3 cut(s)	100, 418, 1227
BciT130I	CCWGG	5 cut(s)	929, 1102, 1662, 2231, 2517
BciVI	GTATCC	1 cut(s)	1147
BcnI	CCSGG	2 cut(s)	833, 2478
BcoDI	GTCTC	3 cut(s)	236, 1832, 2848
BfaI	CTAG	6 cut(s)	147, 248, 671, 1089, 1184, 2630
BfmI	CTRYAG	5 cut(s)	699, 1083, 1554, 1842, 2277
BfoI	RGCGCY	2 cut(s)	182, 366
BfrI	CTTAAG	2 cut(s)	740, 2237
BfuAI	ACCTGC	1 cut(s)	1106
BfuI	GTATCC	1 cut(s)	1147
BlnI	CCTAGG	1 cut(s)	670
BlpI	GCTNAGC	1 cut(s)	717
BmcAI	AGTACT	2 cut(s)	727, 1147
Bme1390I	CCNGG	7 cut(s)	833, 929, 1102, 1662, 2231, 2478, 2517
Bme18I	GGWCC	3 cut(s)	1724, 2227, 2442
BmeRI	GACNNNNNGTC	1 cut(s)	2517
BmeT110I	CYCGRG	1 cut(s)	2337
BmgBI	CACGTC	1 cut(s)	1238
BmgT120I	GGNCC	4 cut(s)	619, 1724, 2227, 2442
BmiI	GGNNCC	6 cut(s)	180, 621, 933, 2003, 2379, 2694
BmrFI	CCNGG	7 cut(s)	833, 929, 1102, 1662, 2231, 2478, 2517
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	1 cut(s)	2487
BmuI	ACTGGG	1 cut(s)	803
BpiI	GAAGAC	4 cut(s)	1464, 1811, 2016, 2870
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	1 cut(s)	1511
Bpu10I	CCTNAGC	2 cut(s)	174, 1536
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuMI	CCSGG	2 cut(s)	833, 2478
Bsa29I	ATCGAT	1 cut(s)	2179
BsaAI	YACGTR	4 cut(s)	189, 533, 569, 1028
BsaBI	GATNNNNATC	2 cut(s)	2169, 2262
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	2848
BsaJI	CCNNGG	9 cut(s)	495, 670, 1101, 1272, 1572, 1660, 1819, 2223, 2477
BsaWI	WCCGGW	2 cut(s)	439, 1647
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 1737, 1767
Bsc4I	CCNNNNNNNGG	4 cut(s)	634, 973, 1249, 1354
Bse118I	RCCGGY	3 cut(s)	169, 181, 1647
Bse1I	ACTGG	8 cut(s)	613, 798, 1133, 1424, 1494, 2617, 2727, 2860
Bse21I	CCTNAGG	1 cut(s)	2418
Bse3DI	GCAATG	2 cut(s)	2766, 2778
Bse8I	GATNNNNATC	2 cut(s)	2169, 2262
BseBI	CCWGG	5 cut(s)	929, 1102, 1662, 2231, 2517
BseCI	ATCGAT	1 cut(s)	2179
BseDI	CCNNGG	9 cut(s)	495, 670, 1101, 1272, 1572, 1660, 1819, 2223, 2477
BseGI	GGATG	4 cut(s)	696, 2502, 2656, 2782
BseJI	GATNNNNATC	2 cut(s)	2169, 2262
BseLI	CCNNNNNNNGG	4 cut(s)	634, 973, 1249, 1354
BseMI	GCAATG	2 cut(s)	2766, 2778
BseNI	ACTGG	8 cut(s)	613, 798, 1133, 1424, 1494, 2617, 2727, 2860
BseRI	GAGGAG	3 cut(s)	107, 166, 1424
BseSI	GKGCMC	3 cut(s)	1123, 1171, 1237
BsgI	GTGCAG	3 cut(s)	371, 633, 1134
Bsh1285I	CGRYCG	3 cut(s)	24, 170, 264
BshFI	GGCC	9 cut(s)	63, 185, 259, 275, 620, 1132, 1328, 1953, 2351
BshNI	GGYRCC	5 cut(s)	178, 931, 2001, 2377, 2692
BshTI	ACCGGT	1 cut(s)	1647
BshVI	ATCGAT	1 cut(s)	2179
BsiEI	CGRYCG	3 cut(s)	24, 170, 264
BsiHKAI	GWGCWC	3 cut(s)	1123, 1171, 1237
BsiHKCI	CYCGRG	1 cut(s)	2337
BsiSI	CCGG	9 cut(s)	30, 64, 170, 182, 440, 456, 832, 1648, 2477
BslFI	GGGAC	3 cut(s)	25, 2067, 2494
BslI	CCNNNNNNNGG	4 cut(s)	634, 973, 1249, 1354
BsmAI	GTCTC	3 cut(s)	236, 1832, 2848
BsmFI	GGGAC	3 cut(s)	25, 2067, 2494
BsmI	GAATGC	1 cut(s)	2242
BsnI	GGCC	9 cut(s)	63, 185, 259, 275, 620, 1132, 1328, 1953, 2351
Bso31I	GGTCTC	1 cut(s)	2848
BsoBI	CYCGRG	1 cut(s)	2337
Bsp1286I	GDGCHC	3 cut(s)	1123, 1171, 1237
Bsp143I	GATC	9 cut(s)	140, 192, 261, 1009, 1382, 1435, 1797, 2016, 2164
Bsp1720I	GCTNAGC	1 cut(s)	717
Bsp19I	CCATGG	3 cut(s)	1272, 1819, 2223
BspANI	GGCC	9 cut(s)	63, 185, 259, 275, 620, 1132, 1328, 1953, 2351
BspDI	ATCGAT	1 cut(s)	2179
BspHI	TCATGA	1 cut(s)	1390
BspLI	GGNNCC	6 cut(s)	180, 621, 933, 2003, 2379, 2694
BspMAI	CTGCAG	3 cut(s)	703, 1558, 1846
BspMI	ACCTGC	1 cut(s)	1106
BspPI	GGATC	5 cut(s)	200, 1017, 1390, 1430, 2172
BspQI	GCTCTTC	1 cut(s)	1728
BspT107I	GGYRCC	5 cut(s)	178, 931, 2001, 2377, 2692
BspTI	CTTAAG	2 cut(s)	740, 2237
BspTNI	GGTCTC	1 cut(s)	2848
BsrBI	CCGCTC	2 cut(s)	120, 969
BsrDI	GCAATG	2 cut(s)	2766, 2778
BsrFI	RCCGGY	3 cut(s)	169, 181, 1647
BsrI	ACTGG	8 cut(s)	613, 798, 1133, 1424, 1494, 2617, 2727, 2860
BssAI	RCCGGY	3 cut(s)	169, 181, 1647
BssECI	CCNNGG	9 cut(s)	495, 670, 1101, 1272, 1572, 1660, 1819, 2223, 2477
BssMI	GATC	9 cut(s)	140, 192, 261, 1009, 1382, 1435, 1797, 2016, 2164
BssNAI	GTATAC	1 cut(s)	768
BssNI	GRCGYC	1 cut(s)	179
BssT1I	CCWWGG	5 cut(s)	495, 670, 1272, 1819, 2223
Bst1107I	GTATAC	1 cut(s)	768
Bst2UI	CCWGG	5 cut(s)	929, 1102, 1662, 2231, 2517
Bst4CI	ACNGT	4 cut(s)	686, 772, 2049, 2395
Bst6I	CTCTTC	4 cut(s)	1401, 1627, 1728, 2755
BstACI	GRCGYC	1 cut(s)	179
BstAFI	CTTAAG	2 cut(s)	740, 2237
BstAPI	GCANNNNNTGC	4 cut(s)	611, 1420, 2086, 2735
BstBAI	YACGTR	4 cut(s)	189, 533, 569, 1028
BstC8I	GCNNGC	5 cut(s)	183, 516, 737, 893, 1167
BstDSI	CCRYGG	3 cut(s)	1272, 1819, 2223
BstF5I	GGATG	4 cut(s)	696, 2502, 2656, 2782
BstH2I	RGCGCY	2 cut(s)	182, 366
BstHHI	GCGC	3 cut(s)	181, 365, 505
BstKTI	GATC	9 cut(s)	143, 195, 264, 1012, 1385, 1438, 1800, 2019, 2167
BstMAI	GTCTC	3 cut(s)	236, 1832, 2848
BstMBI	GATC	9 cut(s)	140, 192, 261, 1009, 1382, 1435, 1797, 2016, 2164
BstMCI	CGRYCG	3 cut(s)	24, 170, 264
BstNI	CCWGG	5 cut(s)	929, 1102, 1662, 2231, 2517
BstNSI	RCATGY	4 cut(s)	58, 1742, 2327, 2733
BstSCI	CCNGG	7 cut(s)	831, 927, 1100, 1660, 2229, 2476, 2515
BstSFI	CTRYAG	5 cut(s)	699, 1083, 1554, 1842, 2277
BstSLI	GKGCMC	3 cut(s)	1123, 1171, 1237
BstV2I	GAAGAC	4 cut(s)	1464, 1811, 2016, 2870
BstX2I	RGATCY	1 cut(s)	1435
BstXI	CCANNNNNNTGG	1 cut(s)	2839
BstYI	RGATCY	1 cut(s)	1435
BstZ17I	GTATAC	1 cut(s)	768
Bsu15I	ATCGAT	1 cut(s)	2179
Bsu36I	CCTNAGG	1 cut(s)	2418
BsuI	GTATCC	1 cut(s)	1147
BsuRI	GGCC	9 cut(s)	63, 185, 259, 275, 620, 1132, 1328, 1953, 2351
BsuTUI	ATCGAT	1 cut(s)	2179
BtgI	CCRYGG	3 cut(s)	1272, 1819, 2223
BtgZI	GCGATG	1 cut(s)	2805
BtrI	CACGTC	1 cut(s)	1238
BtsCI	GGATG	4 cut(s)	696, 2502, 2656, 2782
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	5 cut(s)	621, 682, 791, 1431, 2054
BveI	ACCTGC	1 cut(s)	1106
Cac8I	GCNNGC	5 cut(s)	183, 516, 737, 893, 1167
CaiI	CAGNNNCTG	3 cut(s)	887, 953, 1058
CciI	TCATGA	1 cut(s)	1390
CfoI	GCGC	3 cut(s)	181, 365, 505
Cfr10I	RCCGGY	3 cut(s)	169, 181, 1647
Cfr13I	GGNCC	4 cut(s)	619, 1724, 2227, 2442
ClaI	ATCGAT	1 cut(s)	2179
CseI	GACGC	2 cut(s)	60, 415
CsiI	ACCWGGT	2 cut(s)	927, 2515
Csp6I	GTAC	7 cut(s)	49, 573, 726, 804, 1146, 2274, 2378
CspAI	ACCGGT	1 cut(s)	1647
CviQI	GTAC	7 cut(s)	49, 573, 726, 804, 1146, 2274, 2378
DinI	GGCGCC	1 cut(s)	180
DpnI	GATC	9 cut(s)	142, 194, 263, 1011, 1384, 1437, 1799, 2018, 2166
DpnII	GATC	9 cut(s)	140, 192, 261, 1009, 1382, 1435, 1797, 2016, 2164
DraI	TTTAAA	1 cut(s)	2152
DrdI	GACNNNNNNGTC	1 cut(s)	2621
DriI	GACNNNNNGTC	1 cut(s)	2517
DseDI	GACNNNNNNGTC	1 cut(s)	2621
EaeI	YGGCCR	4 cut(s)	61, 183, 257, 1326
Eam1104I	CTCTTC	4 cut(s)	1401, 1627, 1728, 2755
Eam1105I	GACNNNNNGTC	1 cut(s)	2517
EarI	CTCTTC	4 cut(s)	1401, 1627, 1728, 2755
Eco130I	CCWWGG	5 cut(s)	495, 670, 1272, 1819, 2223
Eco31I	GGTCTC	1 cut(s)	2848
Eco47I	GGWCC	3 cut(s)	1724, 2227, 2442
Eco57I	CTGAAG	4 cut(s)	470, 530, 1488, 2343
Eco72I	CACGTG	2 cut(s)	189, 1028
Eco81I	CCTNAGG	1 cut(s)	2418
Eco88I	CYCGRG	1 cut(s)	2337
EcoRII	CCWGG	5 cut(s)	927, 1100, 1660, 2229, 2515
EcoT14I	CCWWGG	5 cut(s)	495, 670, 1272, 1819, 2223
EgeI	GGCGCC	1 cut(s)	180
EheI	GGCGCC	1 cut(s)	180
ErhI	CCWWGG	5 cut(s)	495, 670, 1272, 1819, 2223
FalI	AAGNNNNNCTT	6 cut(s)	465, 497, 2186, 2218, 2396, 2428
FaqI	GGGAC	3 cut(s)	25, 2067, 2494
FauI	CCCGC	1 cut(s)	999
FblI	GTMKAC	4 cut(s)	767, 1075, 2397, 2464
FokI	GGATG	4 cut(s)	703, 2509, 2663, 2789
FspBI	CTAG	6 cut(s)	147, 248, 671, 1089, 1184, 2630
GlaI	GCGC	3 cut(s)	180, 364, 504
GsuI	CTGGAG	1 cut(s)	1511
HaeII	RGCGCY	2 cut(s)	182, 366
HaeIII	GGCC	9 cut(s)	63, 185, 259, 275, 620, 1132, 1328, 1953, 2351
HapII	CCGG	9 cut(s)	30, 64, 170, 182, 440, 456, 832, 1648, 2477
HgaI	GACGC	2 cut(s)	60, 415
HhaI	GCGC	3 cut(s)	181, 365, 505
Hin1I	GRCGYC	1 cut(s)	179
Hin6I	GCGC	3 cut(s)	179, 363, 503
HinP1I	GCGC	3 cut(s)	179, 363, 503
HincII	GTYRAC	5 cut(s)	405, 819, 1906, 2286, 2398
HindII	GTYRAC	5 cut(s)	405, 819, 1906, 2286, 2398
HindIII	AAGCTT	1 cut(s)	1290
HpaI	GTTAAC	1 cut(s)	819
HpaII	CCGG	9 cut(s)	30, 64, 170, 182, 440, 456, 832, 1648, 2477
HphI	GGTGA	9 cut(s)	514, 764, 1289, 1484, 1835, 2315, 2342, 2555, 2798
Hpy188III	TCNNGA	8 cut(s)	138, 761, 1391, 1795, 1801, 1970, 2420, 2532
Hpy99I	CGWCG	6 cut(s)	76, 79, 104, 107, 110, 1242
HpyAV	CCTTC	9 cut(s)	73, 286, 491, 1325, 1463, 1489, 1852, 2100, 2433
HpyCH4III	ACNGT	4 cut(s)	686, 772, 2049, 2395
HpyCH4IV	ACGT	5 cut(s)	188, 532, 568, 1027, 1237
HpySE526I	ACGT	5 cut(s)	188, 532, 568, 1027, 1237
Hsp92I	GRCGYC	1 cut(s)	179
HspAI	GCGC	3 cut(s)	179, 363, 503
KasI	GGCGCC	1 cut(s)	178
KpnI	GGTACC	1 cut(s)	2381
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
KspAI	GTTAAC	1 cut(s)	819
Kzo9I	GATC	9 cut(s)	140, 192, 261, 1009, 1382, 1435, 1797, 2016, 2164
LguI	GCTCTTC	1 cut(s)	1728
LmnI	GCTCC	7 cut(s)	32, 117, 1411, 1498, 1946, 2233, 2370
LweI	GCATC	1 cut(s)	2487
MabI	ACCWGGT	2 cut(s)	927, 2515
MaeI	CTAG	6 cut(s)	147, 248, 671, 1089, 1184, 2630
MaeII	ACGT	5 cut(s)	188, 532, 568, 1027, 1237
MaeIII	GTNAC	3 cut(s)	976, 1687, 2543
MalI	GATC	9 cut(s)	142, 194, 263, 1011, 1384, 1437, 1799, 2018, 2166
MbiI	CCGCTC	2 cut(s)	120, 969
MboI	GATC	9 cut(s)	140, 192, 261, 1009, 1382, 1435, 1797, 2016, 2164
MfeI	CAATTG	1 cut(s)	2107
MflI	RGATCY	1 cut(s)	1435
MhlI	GDGCHC	3 cut(s)	1123, 1171, 1237
Mly113I	GGCGCC	1 cut(s)	179
MlyI	GAGTC	4 cut(s)	206, 238, 461, 1901
MmeI	TCCRAC	5 cut(s)	689, 763, 1463, 1723, 2685
MroNI	GCCGGC	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	1201
MslI	CAYNNNNRTG	6 cut(s)	648, 1026, 1824, 2328, 2771, 2872
MspA1I	CMGCKG	2 cut(s)	809, 1343
MspCI	CTTAAG	2 cut(s)	740, 2237
MspI	CCGG	9 cut(s)	30, 64, 170, 182, 440, 456, 832, 1648, 2477
MspR9I	CCNGG	7 cut(s)	833, 929, 1102, 1662, 2231, 2478, 2517
MunI	CAATTG	1 cut(s)	2107
Mva1269I	GAATGC	1 cut(s)	2242
MvaI	CCWGG	5 cut(s)	929, 1102, 1662, 2231, 2517
NaeI	GCCGGC	1 cut(s)	183
NarI	GGCGCC	1 cut(s)	179
NciI	CCSGG	2 cut(s)	833, 2478
NcoI	CCATGG	3 cut(s)	1272, 1819, 2223
NdeII	GATC	9 cut(s)	140, 192, 261, 1009, 1382, 1435, 1797, 2016, 2164
NgoMIV	GCCGGC	1 cut(s)	181
NlaIV	GGNNCC	6 cut(s)	180, 621, 933, 2003, 2379, 2694
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	976, 2543
NspI	RCATGY	4 cut(s)	58, 1742, 2327, 2733
PagI	TCATGA	1 cut(s)	1390
PaqCI	CACCTGC	1 cut(s)	1106
PciI	ACATGT	2 cut(s)	54, 2323
PciSI	GCTCTTC	1 cut(s)	1728
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	2242
PdiI	GCCGGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	1201
PfoI	TCCNGGA	1 cut(s)	831
PinAI	ACCGGT	1 cut(s)	1647
Ple19I	CGATCG	1 cut(s)	264
PleI	GAGTC	4 cut(s)	205, 238, 460, 1901
PluTI	GGCGCC	1 cut(s)	182
PmaCI	CACGTG	2 cut(s)	189, 1028
PmlI	CACGTG	2 cut(s)	189, 1028
PpsI	GAGTC	4 cut(s)	205, 238, 460, 1901
Ppu21I	YACGTR	4 cut(s)	189, 533, 569, 1028
PscI	ACATGT	2 cut(s)	54, 2323
Psp6I	CCWGG	5 cut(s)	927, 1100, 1660, 2229, 2515
PspCI	CACGTG	2 cut(s)	189, 1028
PspGI	CCWGG	5 cut(s)	927, 1100, 1660, 2229, 2515
PspN4I	GGNNCC	6 cut(s)	180, 621, 933, 2003, 2379, 2694
PspPI	GGNCC	4 cut(s)	619, 1724, 2227, 2442
PstI	CTGCAG	3 cut(s)	703, 1558, 1846
PstNI	CAGNNNCTG	3 cut(s)	887, 953, 1058
PsuI	RGATCY	1 cut(s)	1435
PvuI	CGATCG	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	7 cut(s)	50, 574, 727, 805, 1147, 2275, 2379
RsaNI	GTAC	7 cut(s)	49, 573, 726, 804, 1146, 2274, 2378
RseI	CAYNNNNRTG	6 cut(s)	648, 1026, 1824, 2328, 2771, 2872
SalI	GTCGAC	1 cut(s)	2396
SapI	GCTCTTC	1 cut(s)	1728
Sau3AI	GATC	9 cut(s)	140, 192, 261, 1009, 1382, 1435, 1797, 2016, 2164
Sau96I	GGNCC	4 cut(s)	619, 1724, 2227, 2442
ScaI	AGTACT	2 cut(s)	727, 1147
SchI	GAGTC	4 cut(s)	206, 238, 461, 1901
ScrFI	CCNGG	7 cut(s)	833, 929, 1102, 1662, 2231, 2478, 2517
SduI	GDGCHC	3 cut(s)	1123, 1171, 1237
SexAI	ACCWGGT	2 cut(s)	927, 2515
SfaNI	GCATC	1 cut(s)	2487
SfcI	CTRYAG	5 cut(s)	699, 1083, 1554, 1842, 2277
SfoI	GGCGCC	1 cut(s)	180
SinI	GGWCC	3 cut(s)	1724, 2227, 2442
SmiMI	CAYNNNNRTG	6 cut(s)	648, 1026, 1824, 2328, 2771, 2872
SmlI	CTYRAG	2 cut(s)	740, 2237
SmoI	CTYRAG	2 cut(s)	740, 2237
SspDI	GGCGCC	1 cut(s)	178
SspMI	CTAG	6 cut(s)	147, 248, 671, 1089, 1184, 2630
StyD4I	CCNGG	7 cut(s)	831, 927, 1100, 1660, 2229, 2476, 2515
StyI	CCWWGG	5 cut(s)	495, 670, 1272, 1819, 2223
TaaI	ACNGT	4 cut(s)	686, 772, 2049, 2395
TaiI	ACGT	5 cut(s)	191, 535, 571, 1030, 1240
TaqII	GACCGA	1 cut(s)	1741
TatI	WGTACW	3 cut(s)	48, 725, 1145
TauI	GCSGC	2 cut(s)	8, 29
TscAI	CASTG	5 cut(s)	621, 689, 798, 1431, 2054
TseFI	GTSAC	2 cut(s)	976, 2543
Tsp45I	GTSAC	2 cut(s)	976, 2543
TspRI	CASTG	5 cut(s)	621, 689, 798, 1431, 2054
Vha464I	CTTAAG	2 cut(s)	740, 2237
VneI	GTGCAC	3 cut(s)	1119, 1167, 1233
VpaK11BI	GGWCC	3 cut(s)	1724, 2227, 2442
XapI	RAATTY	3 cut(s)	310, 1994, 2146
XceI	RCATGY	4 cut(s)	58, 1742, 2327, 2733
XmaJI	CCTAGG	1 cut(s)	670
XmiI	GTMKAC	4 cut(s)	767, 1075, 2397, 2464
XmnI	GAANNNNTTC	1 cut(s)	1201
XspI	CTAG	6 cut(s)	147, 248, 671, 1089, 1184, 2630
ZrmI	AGTACT	2 cut(s)	727, 1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.