Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1538 |
| AatII | GACGTC | 1 cut(s) | 1536 |
| AccB1I | GGYRCC | 1 cut(s) | 949 |
| AccBSI | CCGCTC | 1 cut(s) | 832 |
| AccI | GTMKAC | 1 cut(s) | 1093 |
| AclWI | GGATC | 2 cut(s) | 1035, 1349 |
| AcoI | YGGCCR | 3 cut(s) | 251, 1148, 1626 |
| AcsI | RAATTY | 2 cut(s) | 535, 1273 |
| AcuI | CTGAAG | 4 cut(s) | 464, 524, 1317, 1500 |
| AcvI | CACGTG | 1 cut(s) | 183 |
| AcyI | GRCGYC | 2 cut(s) | 74, 1533 |
| AdeI | CACNNNGTG | 1 cut(s) | 791 |
| AfaI | GTAC | 5 cut(s) | 42, 474, 568, 721, 799 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 183, 494, 495, 628, 681, 991, 1258 |
| AflIII | ACRYGT | 1 cut(s) | 1750 |
| AgeI | ACCGGT | 1 cut(s) | 1659 |
| AgsI | TTSAA | 8 cut(s) | 391, 420, 540, 849, 1037, 1054, 1273, 1745 |
| AjiI | CACGTC | 1 cut(s) | 1247 |
| AjnI | CCWGG | 3 cut(s) | 945, 1548, 1672 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 191, 223 |
| Alw21I | GWGCWC | 3 cut(s) | 1141, 1189, 1246 |
| Alw26I | GTCTC | 1 cut(s) | 1760 |
| Alw44I | GTGCAC | 3 cut(s) | 1137, 1185, 1242 |
| AlwI | GGATC | 2 cut(s) | 1035, 1349 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 905, 971 |
| Ama87I | CYCGRG | 1 cut(s) | 188 |
| AoxI | GGCC | 6 cut(s) | 251, 267, 612, 1148, 1545, 1626 |
| ApaLI | GTGCAC | 3 cut(s) | 1137, 1185, 1242 |
| ApoI | RAATTY | 2 cut(s) | 535, 1273 |
| AseI | ATTAAT | 3 cut(s) | 557, 1719, 1815 |
| AsiGI | ACCGGT | 1 cut(s) | 1659 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 839, 1210 |
| AspA2I | CCTAGG | 1 cut(s) | 664 |
| AspLEI | GCGC | 2 cut(s) | 169, 175 |
| AspS9I | GGNCC | 4 cut(s) | 613, 1262, 1546, 1736 |
| AsuC2I | CCSGG | 2 cut(s) | 451, 1398 |
| AsuHPI | GGTGA | 2 cut(s) | 758, 1496 |
| AvaI | CYCGRG | 1 cut(s) | 188 |
| AvaII | GGWCC | 2 cut(s) | 1262, 1736 |
| AvrII | CCTAGG | 1 cut(s) | 664 |
| BaeGI | GKGCMC | 3 cut(s) | 1141, 1189, 1246 |
| BanI | GGYRCC | 1 cut(s) | 949 |
| BbrPI | CACGTG | 1 cut(s) | 183 |
| Bbv12I | GWGCWC | 3 cut(s) | 1141, 1189, 1246 |
| BccI | CCATC | 6 cut(s) | 635, 679, 1105, 1637, 1727, 1843 |
| BceAI | ACGGC | 2 cut(s) | 23, 1641 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1272, 1306 |
| BciT130I | CCWGG | 3 cut(s) | 947, 1550, 1674 |
| BclI | TGATCA | 3 cut(s) | 714, 1819, 1860 |
| BcnI | CCSGG | 2 cut(s) | 451, 1398 |
| BcoDI | GTCTC | 1 cut(s) | 1760 |
| BfaI | CTAG | 7 cut(s) | 665, 1044, 1107, 1158, 1380, 1773, 1803 |
| BfmI | CTRYAG | 3 cut(s) | 693, 1101, 1566 |
| BfoI | RGCGCY | 1 cut(s) | 176 |
| BlnI | CCTAGG | 1 cut(s) | 664 |
| BmcAI | AGTACT | 1 cut(s) | 721 |
| Bme1390I | CCNGG | 5 cut(s) | 451, 947, 1398, 1550, 1674 |
| Bme18I | GGWCC | 2 cut(s) | 1262, 1736 |
| BmeT110I | CYCGRG | 1 cut(s) | 188 |
| BmgBI | CACGTC | 1 cut(s) | 1247 |
| BmgT120I | GGNCC | 4 cut(s) | 613, 1262, 1546, 1736 |
| BmiI | GGNNCC | 4 cut(s) | 34, 615, 951, 1263 |
| BmrFI | CCNGG | 5 cut(s) | 451, 947, 1398, 1550, 1674 |
| BmrI | ACTGGG | 1 cut(s) | 797 |
| BmsI | GCATC | 1 cut(s) | 585 |
| BmuI | ACTGGG | 1 cut(s) | 797 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 139, 171 |
| BpmI | CTGGAG | 2 cut(s) | 624, 1523 |
| BpuEI | CTTGAG | 1 cut(s) | 719 |
| BpuMI | CCSGG | 2 cut(s) | 451, 1398 |
| BsaAI | YACGTR | 2 cut(s) | 183, 563 |
| BsaHI | GRCGYC | 2 cut(s) | 74, 1533 |
| BsaJI | CCNNGG | 5 cut(s) | 450, 489, 664, 1548, 1672 |
| BsaWI | WCCGGW | 3 cut(s) | 433, 984, 1659 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 24, 54 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 183, 494, 495, 628, 681, 991, 1258 |
| Bse118I | RCCGGY | 2 cut(s) | 163, 1659 |
| Bse1I | ACTGG | 7 cut(s) | 607, 792, 1151, 1436, 1506, 1875, 1887 |
| BseBI | CCWGG | 3 cut(s) | 947, 1550, 1674 |
| BseDI | CCNNGG | 5 cut(s) | 450, 489, 664, 1548, 1672 |
| BseGI | GGATG | 1 cut(s) | 690 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 183, 494, 495, 628, 681, 991, 1258 |
| BseMII | CTCAG | 2 cut(s) | 975, 1346 |
| BseNI | ACTGG | 7 cut(s) | 607, 792, 1151, 1436, 1506, 1875, 1887 |
| BseRI | GAGGAG | 2 cut(s) | 386, 1436 |
| BseSI | GKGCMC | 3 cut(s) | 1141, 1189, 1246 |
| BseYI | CCCAGC | 2 cut(s) | 494, 871 |
| BsgI | GTGCAG | 1 cut(s) | 365 |
| Bsh1285I | CGRYCG | 4 cut(s) | 24, 109, 164, 258 |
| BshFI | GGCC | 6 cut(s) | 253, 269, 614, 1150, 1547, 1628 |
| BshNI | GGYRCC | 1 cut(s) | 949 |
| BshTI | ACCGGT | 1 cut(s) | 1659 |
| BsiEI | CGRYCG | 4 cut(s) | 24, 109, 164, 258 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1141, 1189, 1246 |
| BsiHKCI | CYCGRG | 1 cut(s) | 188 |
| BsiSI | CCGG | 8 cut(s) | 30, 164, 434, 450, 985, 1252, 1398, 1660 |
| BslFI | GGGAC | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 183, 494, 495, 628, 681, 991, 1258 |
| BsmAI | GTCTC | 1 cut(s) | 1760 |
| BsmFI | GGGAC | 1 cut(s) | 25 |
| BsmI | GAATGC | 2 cut(s) | 512, 781 |
| BsnI | GGCC | 6 cut(s) | 253, 269, 614, 1150, 1547, 1628 |
| BsoBI | CYCGRG | 1 cut(s) | 188 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1141, 1189, 1246 |
| BspANI | GGCC | 6 cut(s) | 253, 269, 614, 1150, 1547, 1628 |
| BspCNI | CTCAG | 2 cut(s) | 974, 1345 |
| BspHI | TCATGA | 2 cut(s) | 1402, 1729 |
| BspLI | GGNNCC | 4 cut(s) | 34, 615, 951, 1263 |
| BspMAI | CTGCAG | 2 cut(s) | 697, 1570 |
| BspPI | GGATC | 2 cut(s) | 1035, 1349 |
| BspT107I | GGYRCC | 1 cut(s) | 949 |
| BsrBI | CCGCTC | 1 cut(s) | 832 |
| BsrFI | RCCGGY | 2 cut(s) | 163, 1659 |
| BsrI | ACTGG | 7 cut(s) | 607, 792, 1151, 1436, 1506, 1875, 1887 |
| BssAI | RCCGGY | 2 cut(s) | 163, 1659 |
| BssECI | CCNNGG | 5 cut(s) | 450, 489, 664, 1548, 1672 |
| BssNI | GRCGYC | 2 cut(s) | 74, 1533 |
| BssT1I | CCWWGG | 2 cut(s) | 489, 664 |
| Bst2UI | CCWGG | 3 cut(s) | 947, 1550, 1674 |
| Bst4CI | ACNGT | 5 cut(s) | 429, 520, 680, 1465, 1782 |
| Bst6I | CTCTTC | 4 cut(s) | 140, 850, 1413, 1639 |
| BstACI | GRCGYC | 2 cut(s) | 74, 1533 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1432 |
| BstBAI | YACGTR | 2 cut(s) | 183, 563 |
| BstC8I | GCNNGC | 6 cut(s) | 171, 177, 510, 731, 911, 1185 |
| BstDEI | CTNAG | 3 cut(s) | 658, 961, 1332 |
| BstF5I | GGATG | 1 cut(s) | 690 |
| BstH2I | RGCGCY | 1 cut(s) | 176 |
| BstHHI | GCGC | 2 cut(s) | 169, 175 |
| BstMAI | GTCTC | 1 cut(s) | 1760 |
| BstMCI | CGRYCG | 4 cut(s) | 24, 109, 164, 258 |
| BstNI | CCWGG | 3 cut(s) | 947, 1550, 1674 |
| BstNSI | RCATGY | 3 cut(s) | 1600, 1754, 1831 |
| BstSCI | CCNGG | 5 cut(s) | 449, 945, 1396, 1548, 1672 |
| BstSFI | CTRYAG | 3 cut(s) | 693, 1101, 1566 |
| BstSLI | GKGCMC | 3 cut(s) | 1141, 1189, 1246 |
| BstX2I | RGATCY | 1 cut(s) | 1354 |
| BstYI | RGATCY | 1 cut(s) | 1354 |
| BsuRI | GGCC | 6 cut(s) | 253, 269, 614, 1150, 1547, 1628 |
| BtrI | CACGTC | 1 cut(s) | 1247 |
| BtsCI | GGATG | 1 cut(s) | 690 |
| BtsI | GCAGTG | 2 cut(s) | 615, 1575 |
| BtsIMutI | CAGTG | 6 cut(s) | 615, 676, 785, 1443, 1476, 1575 |
| Cac8I | GCNNGC | 6 cut(s) | 171, 177, 510, 731, 911, 1185 |
| CaiI | CAGNNNCTG | 2 cut(s) | 905, 971 |
| CciI | TCATGA | 2 cut(s) | 1402, 1729 |
| CfoI | GCGC | 2 cut(s) | 169, 175 |
| Cfr10I | RCCGGY | 2 cut(s) | 163, 1659 |
| Cfr13I | GGNCC | 4 cut(s) | 613, 1262, 1546, 1736 |
| CseI | GACGC | 2 cut(s) | 63, 409 |
| CsiI | ACCWGGT | 1 cut(s) | 945 |
| Csp6I | GTAC | 5 cut(s) | 41, 473, 567, 720, 798 |
| CspAI | ACCGGT | 1 cut(s) | 1659 |
| CviQI | GTAC | 5 cut(s) | 41, 473, 567, 720, 798 |
| DdeI | CTNAG | 3 cut(s) | 658, 961, 1332 |
| DraIII | CACNNNGTG | 1 cut(s) | 791 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1538 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1538 |
| EaeI | YGGCCR | 3 cut(s) | 251, 1148, 1626 |
| Eam1104I | CTCTTC | 4 cut(s) | 140, 850, 1413, 1639 |
| EarI | CTCTTC | 4 cut(s) | 140, 850, 1413, 1639 |
| Eco130I | CCWWGG | 2 cut(s) | 489, 664 |
| Eco32I | GATATC | 1 cut(s) | 1474 |
| Eco47I | GGWCC | 2 cut(s) | 1262, 1736 |
| Eco57I | CTGAAG | 4 cut(s) | 464, 524, 1317, 1500 |
| Eco72I | CACGTG | 1 cut(s) | 183 |
| Eco88I | CYCGRG | 1 cut(s) | 188 |
| EcoRI | GAATTC | 1 cut(s) | 1273 |
| EcoRII | CCWGG | 3 cut(s) | 945, 1548, 1672 |
| EcoRV | GATATC | 1 cut(s) | 1474 |
| EcoT14I | CCWWGG | 2 cut(s) | 489, 664 |
| ErhI | CCWWGG | 2 cut(s) | 489, 664 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 459, 491 |
| FaqI | GGGAC | 1 cut(s) | 25 |
| FauI | CCCGC | 3 cut(s) | 184, 517, 1017 |
| FauNDI | CATATG | 1 cut(s) | 1310 |
| FbaI | TGATCA | 3 cut(s) | 714, 1819, 1860 |
| FblI | GTMKAC | 1 cut(s) | 1093 |
| FokI | GGATG | 1 cut(s) | 697 |
| FspBI | CTAG | 7 cut(s) | 665, 1044, 1107, 1158, 1380, 1773, 1803 |
| GlaI | GCGC | 2 cut(s) | 168, 174 |
| GsaI | CCCAGC | 2 cut(s) | 498, 875 |
| GsuI | CTGGAG | 2 cut(s) | 624, 1523 |
| HaeII | RGCGCY | 1 cut(s) | 176 |
| HaeIII | GGCC | 6 cut(s) | 253, 269, 614, 1150, 1547, 1628 |
| HapII | CCGG | 8 cut(s) | 30, 164, 434, 450, 985, 1252, 1398, 1660 |
| HgaI | GACGC | 2 cut(s) | 63, 409 |
| HhaI | GCGC | 2 cut(s) | 169, 175 |
| Hin1I | GRCGYC | 2 cut(s) | 74, 1533 |
| Hin6I | GCGC | 2 cut(s) | 167, 173 |
| HinP1I | GCGC | 2 cut(s) | 167, 173 |
| HincII | GTYRAC | 3 cut(s) | 85, 399, 813 |
| HindII | GTYRAC | 3 cut(s) | 85, 399, 813 |
| HindIII | AAGCTT | 1 cut(s) | 1299 |
| HpaI | GTTAAC | 1 cut(s) | 813 |
| HpaII | CCGG | 8 cut(s) | 30, 164, 434, 450, 985, 1252, 1398, 1660 |
| HphI | GGTGA | 2 cut(s) | 758, 1496 |
| Hpy166II | GTNNAC | 9 cut(s) | 85, 225, 399, 569, 813, 1094, 1139, 1187, 1244 |
| Hpy188III | TCNNGA | 7 cut(s) | 124, 360, 527, 755, 827, 1403, 1730 |
| Hpy8I | GTNNAC | 9 cut(s) | 85, 225, 399, 569, 813, 1094, 1139, 1187, 1244 |
| Hpy99I | CGWCG | 5 cut(s) | 79, 95, 98, 101, 1251 |
| HpyAV | CCTTC | 5 cut(s) | 280, 560, 1475, 1501, 1713 |
| HpyCH4III | ACNGT | 5 cut(s) | 429, 520, 680, 1465, 1782 |
| HpyCH4IV | ACGT | 6 cut(s) | 54, 182, 562, 887, 1246, 1533 |
| HpyF3I | CTNAG | 3 cut(s) | 658, 961, 1332 |
| HpySE526I | ACGT | 6 cut(s) | 54, 182, 562, 887, 1246, 1533 |
| Hsp92I | GRCGYC | 2 cut(s) | 74, 1533 |
| HspAI | GCGC | 2 cut(s) | 167, 173 |
| Ksp22I | TGATCA | 3 cut(s) | 714, 1819, 1860 |
| KspAI | GTTAAC | 1 cut(s) | 813 |
| LmnI | GCTCC | 5 cut(s) | 32, 605, 1423, 1510, 1797 |
| LweI | GCATC | 1 cut(s) | 585 |
| MabI | ACCWGGT | 1 cut(s) | 945 |
| MaeI | CTAG | 7 cut(s) | 665, 1044, 1107, 1158, 1380, 1773, 1803 |
| MaeII | ACGT | 6 cut(s) | 54, 182, 562, 887, 1246, 1533 |
| MaeIII | GTNAC | 3 cut(s) | 859, 994, 1345 |
| MbiI | CCGCTC | 1 cut(s) | 832 |
| MflI | RGATCY | 1 cut(s) | 1354 |
| MhlI | GDGCHC | 3 cut(s) | 1141, 1189, 1246 |
| MluCI | AATT | 6 cut(s) | 304, 363, 535, 1273, 1720, 1853 |
| MlyI | GAGTC | 2 cut(s) | 200, 455 |
| MmeI | TCCRAC | 3 cut(s) | 683, 1447, 1819 |
| MroXI | GAANNNNTTC | 2 cut(s) | 839, 1210 |
| MseI | TTAA | 7 cut(s) | 60, 279, 557, 812, 1013, 1719, 1815 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1832 |
| MspA1I | CMGCKG | 2 cut(s) | 803, 875 |
| MspI | CCGG | 8 cut(s) | 30, 164, 434, 450, 985, 1252, 1398, 1660 |
| MspR9I | CCNGG | 5 cut(s) | 451, 947, 1398, 1550, 1674 |
| Mva1269I | GAATGC | 2 cut(s) | 512, 781 |
| MvaI | CCWGG | 3 cut(s) | 947, 1550, 1674 |
| NciI | CCSGG | 2 cut(s) | 451, 1398 |
| NdeI | CATATG | 1 cut(s) | 1310 |
| NlaIV | GGNNCC | 4 cut(s) | 34, 615, 951, 1263 |
| NmeAIII | GCCGAG | 2 cut(s) | 136, 222 |
| NmuCI | GTSAC | 2 cut(s) | 994, 1345 |
| NspI | RCATGY | 3 cut(s) | 1600, 1754, 1831 |
| PaeR7I | CTCGAG | 1 cut(s) | 188 |
| PagI | TCATGA | 2 cut(s) | 1402, 1729 |
| PciI | ACATGT | 1 cut(s) | 1750 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 102, 1539 |
| PctI | GAATGC | 2 cut(s) | 512, 781 |
| PdmI | GAANNNNTTC | 2 cut(s) | 839, 1210 |
| PfeI | GAWTC | 8 cut(s) | 902, 1289, 1322, 1328, 1376, 1680, 1712, 1883 |
| PflFI | GACNNNGTC | 1 cut(s) | 1398 |
| PinAI | ACCGGT | 1 cut(s) | 1659 |
| Ple19I | CGATCG | 2 cut(s) | 109, 258 |
| PleI | GAGTC | 2 cut(s) | 199, 454 |
| PmaCI | CACGTG | 1 cut(s) | 183 |
| PmlI | CACGTG | 1 cut(s) | 183 |
| PpsI | GAGTC | 2 cut(s) | 199, 454 |
| Ppu21I | YACGTR | 2 cut(s) | 183, 563 |
| PscI | ACATGT | 1 cut(s) | 1750 |
| PshBI | ATTAAT | 3 cut(s) | 557, 1719, 1815 |
| Psp6I | CCWGG | 3 cut(s) | 945, 1548, 1672 |
| PspCI | CACGTG | 1 cut(s) | 183 |
| PspFI | CCCAGC | 2 cut(s) | 494, 871 |
| PspGI | CCWGG | 3 cut(s) | 945, 1548, 1672 |
| PspN4I | GGNNCC | 4 cut(s) | 34, 615, 951, 1263 |
| PspPI | GGNCC | 4 cut(s) | 613, 1262, 1546, 1736 |
| PspXI | VCTCGAGB | 1 cut(s) | 188 |
| PstI | CTGCAG | 2 cut(s) | 697, 1570 |
| PstNI | CAGNNNCTG | 2 cut(s) | 905, 971 |
| PsuI | RGATCY | 1 cut(s) | 1354 |
| PsyI | GACNNNGTC | 1 cut(s) | 1398 |
| PvuI | CGATCG | 2 cut(s) | 109, 258 |
| PvuII | CAGCTG | 2 cut(s) | 803, 875 |
| RsaI | GTAC | 5 cut(s) | 42, 474, 568, 721, 799 |
| RsaNI | GTAC | 5 cut(s) | 41, 473, 567, 720, 798 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1832 |
| SaqAI | TTAA | 7 cut(s) | 60, 279, 557, 812, 1013, 1719, 1815 |
| Sau96I | GGNCC | 4 cut(s) | 613, 1262, 1546, 1736 |
| ScaI | AGTACT | 1 cut(s) | 721 |
| SchI | GAGTC | 2 cut(s) | 200, 455 |
| ScrFI | CCNGG | 5 cut(s) | 451, 947, 1398, 1550, 1674 |
| SduI | GDGCHC | 3 cut(s) | 1141, 1189, 1246 |
| SexAI | ACCWGGT | 1 cut(s) | 945 |
| SfaNI | GCATC | 1 cut(s) | 585 |
| SfcI | CTRYAG | 3 cut(s) | 693, 1101, 1566 |
| Sfr274I | CTCGAG | 1 cut(s) | 188 |
| SinI | GGWCC | 2 cut(s) | 1262, 1736 |
| SlaI | CTCGAG | 1 cut(s) | 188 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1832 |
| SmlI | CTYRAG | 2 cut(s) | 188, 734 |
| SmoI | CTYRAG | 2 cut(s) | 188, 734 |
| Sse9I | AATT | 6 cut(s) | 304, 363, 535, 1273, 1720, 1853 |
| SspI | AATATT | 1 cut(s) | 1450 |
| SspMI | CTAG | 7 cut(s) | 665, 1044, 1107, 1158, 1380, 1773, 1803 |
| StyD4I | CCNGG | 5 cut(s) | 449, 945, 1396, 1548, 1672 |
| StyI | CCWWGG | 2 cut(s) | 489, 664 |
| TaaI | ACNGT | 5 cut(s) | 429, 520, 680, 1465, 1782 |
| TaiI | ACGT | 6 cut(s) | 57, 185, 565, 890, 1249, 1536 |
| TaqI | TCGA | 4 cut(s) | 125, 189, 826, 1542 |
| TasI | AATT | 6 cut(s) | 304, 363, 535, 1273, 1720, 1853 |
| TatI | WGTACW | 2 cut(s) | 472, 719 |
| TauI | GCSGC | 4 cut(s) | 8, 29, 38, 1150 |
| TfiI | GAWTC | 8 cut(s) | 902, 1289, 1322, 1328, 1376, 1680, 1712, 1883 |
| Tru1I | TTAA | 7 cut(s) | 60, 279, 557, 812, 1013, 1719, 1815 |
| Tru9I | TTAA | 7 cut(s) | 60, 279, 557, 812, 1013, 1719, 1815 |
| TscAI | CASTG | 6 cut(s) | 615, 683, 792, 1443, 1483, 1575 |
| TseFI | GTSAC | 2 cut(s) | 994, 1345 |
| Tsp45I | GTSAC | 2 cut(s) | 994, 1345 |
| TspDTI | ATGAA | 9 cut(s) | 907, 993, 1193, 1203, 1431, 1458, 1512, 1602, 1896 |
| TspRI | CASTG | 6 cut(s) | 615, 683, 792, 1443, 1483, 1575 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1398 |
| VneI | GTGCAC | 3 cut(s) | 1137, 1185, 1242 |
| VpaK11BI | GGWCC | 2 cut(s) | 1262, 1736 |
| VspI | ATTAAT | 3 cut(s) | 557, 1719, 1815 |
| XapI | RAATTY | 2 cut(s) | 535, 1273 |
| XceI | RCATGY | 3 cut(s) | 1600, 1754, 1831 |
| XhoI | CTCGAG | 1 cut(s) | 188 |
| XmaJI | CCTAGG | 1 cut(s) | 664 |
| XmiI | GTMKAC | 1 cut(s) | 1093 |
| XmnI | GAANNNNTTC | 2 cut(s) | 839, 1210 |
| XspI | CTAG | 7 cut(s) | 665, 1044, 1107, 1158, 1380, 1773, 1803 |
| ZraI | GACGTC | 1 cut(s) | 1534 |
| ZrmI | AGTACT | 1 cut(s) | 721 |