Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

36476908 .. 36489866

Gene Structure 12959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGCATGGAATAATAGTGATCCTAGTTTCAGCTTAAGGGCAAACAGTGGGAAAGGTATTTCAAGAGCTAACCTTGTGACAAAGCTTAATTTATTGAAGATGTCACTCTGGGATCATACTTTGTCTGCAACTAATGCTTTGCGCAGTTTGCTCAATTGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

54

Amino Acids

6.04

Weight (kDa)

10.27

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	143
AclWI	GGATC	2 cut(s)	14, 120
AflII	CTTAAG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	63, 97
AluBI	AGCT	3 cut(s)	33, 68, 85
AluI	AGCT	3 cut(s)	33, 68, 85
AlwI	GGATC	2 cut(s)	14, 120
AspLEI	GCGC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	19, 112
BspPI	GGATC	2 cut(s)	14, 120
BspTI	CTTAAG	1 cut(s)	34
BssMI	GATC	2 cut(s)	19, 112
Bst4CI	ACNGT	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	22, 115
BstMBI	GATC	2 cut(s)	19, 112
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 148
BtsIMutI	CAGTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	144
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	3 cut(s)	33, 68, 85
CviKI_1	RGCY	3 cut(s)	33, 68, 85
DpnI	GATC	2 cut(s)	21, 114
DpnII	GATC	2 cut(s)	19, 112
FaeI	CATG	1 cut(s)	9
FaiI	YATR	2 cut(s)	7, 117
FatI	CATG	1 cut(s)	5
FspBI	CTAG	1 cut(s)	24
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 148
Hsp92II	CATG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	19, 112
LpnPI	CCDG	1 cut(s)	94
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	76, 102
MalI	GATC	2 cut(s)	21, 114
MboI	GATC	2 cut(s)	19, 112
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	154
MluCI	AATT	2 cut(s)	88, 154
MseI	TTAA	2 cut(s)	35, 87
MspCI	CTTAAG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	134, 148
NdeII	GATC	2 cut(s)	19, 112
NlaIII	CATG	1 cut(s)	9
NmuCI	GTSAC	2 cut(s)	76, 102
NsbI	TGCGCA	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	35, 87
Sau3AI	GATC	2 cut(s)	19, 112
SetI	ASST	5 cut(s)	35, 58, 70, 75, 87
SgeI	CNNG	5 cut(s)	18, 36, 75, 86, 121
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	88, 154
SspMI	CTAG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	2 cut(s)	88, 154
Tru1I	TTAA	2 cut(s)	35, 87
Tru9I	TTAA	2 cut(s)	35, 87
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	2 cut(s)	76, 102
Tsp45I	GTSAC	2 cut(s)	76, 102
TspRI	CASTG	1 cut(s)	52
Vha464I	CTTAAG	1 cut(s)	34
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.