Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

34292219 .. 34294464

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG280100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTCCACCTTGTCCAATACGCTGTGTTTCACTTACTTTAAGACTCTAGGGAAATGGCCAATCGGCGACTTGGCCTTCGGTATTAACTACCTCATGCGTAGGCAGGGAGTGTTCGTCCTGATACAAGTTAGTGTACACGCTGATAAACCTATAAACATGCCTCATGCATATCTTAAACTTTATCTCCCTATCTTTTACAAGTTTCAGATTATAGTGCAAGATTATAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

77

Amino Acids

9.03

Weight (kDa)

9.56

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	2 - 43	4.8e-06	Lipase 3 N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	56
AfaI	GTAC	1 cut(s)	135
AoxI	GGCC	2 cut(s)	56, 72
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
BalI	TGGCCA	1 cut(s)	58
BfaI	CTAG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 168, 198
BshFI	GGCC	2 cut(s)	58, 74
BsnI	GGCC	2 cut(s)	58, 74
Bsp1407I	TGTACA	1 cut(s)	133
BspANI	GGCC	2 cut(s)	58, 74
BsrGI	TGTACA	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	58, 74
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	3 cut(s)	94, 157, 164
CviJI	RGCY	2 cut(s)	58, 74
CviKI_1	RGCY	2 cut(s)	58, 74
CviQI	GTAC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	169
FaeI	CATG	3 cut(s)	97, 160, 167
FaiI	YATR	8 cut(s)	95, 152, 158, 165, 169, 212, 225, 232
FatI	CATG	3 cut(s)	93, 156, 163
FspBI	CTAG	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	58, 74
Hin1II	CATG	3 cut(s)	97, 160, 167
HinfI	GANTC	1 cut(s)	43
Hpy166II	GTNNAC	3 cut(s)	6, 134, 136
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	3 cut(s)	6, 134, 136
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	167, 217
Hsp92II	CATG	3 cut(s)	97, 160, 167
LpnPI	CCDG	2 cut(s)	89, 131
MaeI	CTAG	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	58
MluCI	AATT	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	101, 171
Mox20I	TGGCCA	1 cut(s)	58
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	58
MseI	TTAA	3 cut(s)	39, 84, 174
Msp20I	TGGCCA	1 cut(s)	58
NlaIII	CATG	3 cut(s)	97, 160, 167
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	160
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PsiI	TTATAA	1 cut(s)	225
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	39, 84, 174
SchI	GAGTC	1 cut(s)	37
SetI	ASST	3 cut(s)	11, 93, 151
Sse9I	AATT	1 cut(s)	227
SspMI	CTAG	1 cut(s)	47
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	39, 84, 174
Tru9I	TTAA	3 cut(s)	39, 84, 174
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.