Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007293.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

15432 .. 16022

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007293.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggcggcgaccaccgccgccggagctgctgtgattttgtactacatgtttggccggagagcgtcgtcgaagcagagatttctccaagtcgagatcgacgatgaggaggctttctcggcgacaggctcaggcgccggccacgtggatcgagtcaatgggaatttacaagtggcaagtgtgtatgctggtagtgattgtgtgaagctcaaaggcgctaagattattgaggaactaaattattacttgaagttgttgacgctttgttatctgttttccaagaaaccatttccggtggttttagagtctggtagcttctctatggaagatgtcctttttcagaagcccaaggctatagttcgtaagctcttaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

124

Amino Acids

13.58

Weight (kDa)

8.89

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AciI	CCGC	3 cut(s)	5, 15, 18
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	52, 136
AcsI	RAATTY	1 cut(s)	160
AcvI	CACGTG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	4 cut(s)	26, 205, 312, 364
AluI	AGCT	4 cut(s)	26, 205, 312, 364
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	2 cut(s)	52, 136
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	160
AspLEI	GCGC	2 cut(s)	134, 215
BanI	GGYRCC	1 cut(s)	131
BbrPI	CACGTG	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	2 cut(s)	135, 216
BisI	GCNGC	3 cut(s)	6, 18, 27
BlsI	GCNGC	3 cut(s)	7, 19, 28
BmiI	GGNNCC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse118I	RCCGGY	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	2 cut(s)	54, 138
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	4 cut(s)	21, 55, 135, 290
BsnI	GGCC	2 cut(s)	54, 138
Bsp143I	GATC	2 cut(s)	93, 145
BspACI	CCGC	3 cut(s)	5, 15, 18
BspANI	GGCC	2 cut(s)	54, 138
BspCNI	CTCAG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	2 cut(s)	93, 145
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	3 cut(s)	127, 216, 372
BstH2I	RGCGCY	2 cut(s)	135, 216
BstHHI	GCGC	2 cut(s)	134, 215
BstKTI	GATC	2 cut(s)	96, 148
BstMBI	GATC	2 cut(s)	93, 145
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 23, 26, 116
BstNSI	RCATGY	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	54, 138
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	2 cut(s)	134, 215
Cfr10I	RCCGGY	1 cut(s)	134
CseI	GACGC	2 cut(s)	51, 265
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	46
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	3 cut(s)	127, 216, 372
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	95, 147
DpnII	GATC	2 cut(s)	93, 145
EaeI	YGGCCR	2 cut(s)	52, 136
Eco130I	CCWWGG	1 cut(s)	345
Eco72I	CACGTG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	1 cut(s)	49
FaiI	YATR	4 cut(s)	47, 183, 320, 353
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	6, 18, 27
Fsp4HI	GCNGC	3 cut(s)	6, 18, 27
GlaI	GCGC	2 cut(s)	133, 214
GluI	GCNGC	3 cut(s)	6, 18, 27
HaeII	RGCGCY	2 cut(s)	135, 216
HaeIII	GGCC	2 cut(s)	54, 138
HapII	CCGG	4 cut(s)	21, 55, 135, 290
HgaI	GACGC	2 cut(s)	51, 265
HhaI	GCGC	2 cut(s)	134, 215
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	2 cut(s)	132, 213
HinP1I	GCGC	2 cut(s)	132, 213
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	150, 302
HpaII	CCGG	4 cut(s)	21, 55, 135, 290
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	3 cut(s)	67, 70, 101
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 23, 26, 116
HpyF3I	CTNAG	3 cut(s)	127, 216, 372
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	2 cut(s)	132, 213
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	93, 145
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	8 cut(s)	34, 68, 108, 114, 148, 171, 291, 303
Lsp1109I	GCAGC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	141
MalI	GATC	2 cut(s)	95, 147
MboI	GATC	2 cut(s)	93, 145
MboII	GAAGA	1 cut(s)	335
MluCI	AATT	2 cut(s)	160, 235
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	159, 311
MnlI	CCTC	3 cut(s)	97, 100, 220
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	1 cut(s)	368
MspI	CCGG	4 cut(s)	21, 55, 135, 290
MwoI	GCNNNNNNNGC	4 cut(s)	14, 23, 26, 116
NaeI	GCCGGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	93, 145
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	95
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	7, 19, 28
PleI	GAGTC	2 cut(s)	158, 310
PluTI	GGCGCC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
PpsI	GAGTC	2 cut(s)	158, 310
Ppu21I	YACGTR	1 cut(s)	142
PscI	ACATGT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	133
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	3 cut(s)	6, 18, 27
Sau3AI	GATC	2 cut(s)	93, 145
SchI	GAGTC	2 cut(s)	159, 311
SetI	ASST	5 cut(s)	28, 144, 207, 314, 366
SfcI	CTRYAG	1 cut(s)	351
SfoI	GGCGCC	1 cut(s)	133
Sse9I	AATT	2 cut(s)	160, 235
SsiI	CCGC	3 cut(s)	5, 15, 18
SspDI	GGCGCC	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	345
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	4 cut(s)	68, 90, 96, 148
TasI	AATT	2 cut(s)	160, 235
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	2 cut(s)	8, 20
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseI	GCWGC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.