Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

46192772 .. 46195751

Gene Structure 2980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGGCGGGGACAATGGCCATCGCCGCCGGAGCTGCTGTGATTATGTACTACATGTTTGGCTGGAGAGCGTCGTCAAAGCGGAGATTTCTCCAAGTCGAGACCGATGAGGAGGAGGCTTTCTCGGCAACTAGGGATGGCATTAAAACCCACGGGTACGGGTACCCGCGGGGGAATTTACAAGTGGCGAGTGTGTATGCTGGTAGTGATAGTGTGCAGCTCAAAGTCGCTAAGATTATTGAGGAACTACATTATTACTTTAAGCTGTTGATGCTTTGTTATCTGTTTTCCAAGAAACCGTTTCCTGTGTTTTTAGAGTCCGACTGTTTCTCTATGGAAGATGTCCTTTTTCAGAAGCCCAAGGCTGCGATATCAACACTGAAGCTCCGGCAAAACCACAATGATATCATTACAGAACCAGATCAATTGTGCGTGGGTCATCGTCGTCATCTCCCTGTTTCATTCCATCGTCGCCGAGATCCTCTTCGCCCACCACGACATTGTCTTCAAACTGCTTCTCCCCCCTCACATTATCGTTCTGTTCTAAGAGGTTCTCTGGCATTTGATCATTTCACGGCGCCGCACCAACGGCGGAAGCTCCCAGTCAACGTCGCTCACCTCTATCCGACATCTCCTGGCCCTAGCTCCACCACGCCTTATCCTCTCCAATCAAAGCCGGATCCCAACCCCAAGAATTCGTACAACCAAGCCGGCGATGAGGATTGGGGAAAGAGTATGGAAGAGGAAGTAGTTGAGGAGGAGAAAGATGAGCAGGTCCTTGCCGCCGAGTTCTGGCGGCGTAGACATTGGCTAGAGGTAGGCAAGAGTGGCATCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

280

Amino Acids

31.86

Weight (kDa)

8.56

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	763
Acc65I	GGTACC	1 cut(s)	162
AccB1I	GGYRCC	2 cut(s)	162, 577
AccI	GTMKAC	1 cut(s)	802
AccII	CGCG	1 cut(s)	169
AciI	CCGC	9 cut(s)	8, 27, 82, 167, 169, 581, 592, 783, 796
AclWI	GGATC	3 cut(s)	473, 674, 687
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	175, 694
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	578
AfaI	GTAC	4 cut(s)	50, 158, 164, 701
AfiI	CCNNNNNNNGG	1 cut(s)	792
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	6 cut(s)	35, 220, 265, 385, 598, 645
AluI	AGCT	6 cut(s)	35, 220, 265, 385, 598, 645
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	3 cut(s)	473, 674, 687
AoxI	GGCC	2 cut(s)	18, 637
ApeKI	GCWGC	3 cut(s)	35, 217, 365
ApoI	RAATTY	2 cut(s)	175, 694
Asp718I	GGTACC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	2 cut(s)	638, 775
AsuHPI	GGTGA	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	775
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	679
BanI	GGYRCC	2 cut(s)	162, 577
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	3 cut(s)	22, 229, 352
BccI	CCATC	3 cut(s)	29, 131, 474
BceAI	ACGGC	2 cut(s)	591, 605
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	132, 642, 812
BfoI	RGCGCY	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	763
BisI	GCNGC	7 cut(s)	27, 36, 218, 366, 581, 783, 797
BlsI	GCNGC	7 cut(s)	28, 37, 219, 367, 582, 784, 798
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	638, 775
BmiI	GGNNCC	3 cut(s)	164, 579, 681
BmrFI	CCNGG	1 cut(s)	636
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	497
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	151, 167, 360
BsaXI	ACNNNNNCTCC	6 cut(s)	24, 54, 369, 399, 502, 532
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	3 cut(s)	151, 167, 360
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	4 cut(s)	125, 128, 770, 773
BseXI	GCAGC	3 cut(s)	22, 229, 352
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	20, 639
BshNI	GGYRCC	2 cut(s)	162, 577
BsiSI	CCGG	4 cut(s)	30, 388, 677, 711
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	20, 639
Bso31I	GGTCTC	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	421, 478, 565, 679
BspACI	CCGC	9 cut(s)	8, 27, 82, 167, 169, 581, 592, 783, 796
BspANI	GGCC	2 cut(s)	20, 639
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	164, 579, 681
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	3 cut(s)	473, 674, 687
BspT107I	GGYRCC	2 cut(s)	162, 577
BspTNI	GGTCTC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	710
BsrI	ACTGG	1 cut(s)	602
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	3 cut(s)	151, 167, 360
BssMI	GATC	4 cut(s)	421, 478, 565, 679
BssNI	GRCGYC	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	300, 326
Bst6I	CTCTTC	2 cut(s)	489, 735
BstACI	GRCGYC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	2 cut(s)	231, 545
BstDSI	CCRYGG	2 cut(s)	151, 167
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	424, 481, 568, 682
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	4 cut(s)	421, 478, 565, 679
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 32, 35, 125, 271, 589, 828
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	634
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	3 cut(s)	22, 229, 352
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	478, 679
BstYI	RGATCY	2 cut(s)	478, 679
BsuRI	GGCC	2 cut(s)	20, 639
BtgI	CCRYGG	2 cut(s)	151, 167
BtgZI	GCGATG	3 cut(s)	7, 729, 817
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	1 cut(s)	712
CfoI	GCGC	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	2 cut(s)	638, 775
Cfr42I	CCGCGG	1 cut(s)	170
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	4 cut(s)	49, 157, 163, 700
CviAII	CATG	1 cut(s)	55
CviQI	GTAC	4 cut(s)	49, 157, 163, 700
DdeI	CTNAG	2 cut(s)	231, 545
DinI	GGCGCC	1 cut(s)	579
DpnI	GATC	4 cut(s)	423, 480, 567, 681
DpnII	GATC	4 cut(s)	421, 478, 565, 679
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	489, 735
EarI	CTCTTC	2 cut(s)	489, 735
EciI	GGCGGA	1 cut(s)	607
Eco130I	CCWWGG	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	2 cut(s)	372, 406
Eco47I	GGWCC	1 cut(s)	775
Eco57I	CTGAAG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRI	GAATTC	1 cut(s)	694
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	2 cut(s)	372, 406
EcoT14I	CCWWGG	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	579
EheI	GGCGCC	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	58
FaiI	YATR	5 cut(s)	47, 56, 198, 335, 737
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	1 cut(s)	54
FauI	CCCGC	2 cut(s)	162, 174
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	7 cut(s)	27, 36, 218, 366, 581, 783, 797
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	7 cut(s)	27, 36, 218, 366, 581, 783, 797
FspBI	CTAG	3 cut(s)	132, 642, 812
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	7 cut(s)	27, 36, 218, 366, 581, 783, 797
GsuI	CTGGAG	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	20, 639
HapII	CCGG	4 cut(s)	30, 388, 677, 711
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	580
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	4 cut(s)	30, 388, 677, 711
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	607, 803
Hpy188I	TCNGA	3 cut(s)	322, 354, 627
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	2 cut(s)	607, 803
Hpy99I	CGWCG	4 cut(s)	76, 447, 474, 614
HpyCH4III	ACNGT	2 cut(s)	300, 326
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 32, 35, 125, 271, 589, 828
HpyF3I	CTNAG	2 cut(s)	231, 545
HpySE526I	ACGT	1 cut(s)	609
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	578
KasI	GGCGCC	1 cut(s)	577
KpnI	GGTACC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	710
KroNI	GCCGGC	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	565
KspI	CCGCGG	1 cut(s)	170
Kzo9I	GATC	4 cut(s)	421, 478, 565, 679
LmnI	GCTCC	4 cut(s)	32, 390, 603, 650
Lsp1109I	GCAGC	3 cut(s)	22, 229, 352
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	3 cut(s)	132, 642, 812
MaeII	ACGT	1 cut(s)	609
MalI	GATC	4 cut(s)	423, 480, 567, 681
MboI	GATC	4 cut(s)	421, 478, 565, 679
MboII	GAAGA	4 cut(s)	350, 476, 497, 752
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	2 cut(s)	478, 679
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	3 cut(s)	175, 425, 694
MluNI	TGGCCA	1 cut(s)	20
Mly113I	GGCGCC	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	345, 650
Mox20I	TGGCCA	1 cut(s)	20
MroNI	GCCGGC	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	2 cut(s)	144, 261
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	4 cut(s)	30, 388, 677, 711
MspR9I	CCNGG	1 cut(s)	636
MunI	CAATTG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	7 cut(s)	26, 32, 35, 125, 271, 589, 828
NaeI	GCCGGC	1 cut(s)	712
NarI	GGCGCC	1 cut(s)	578
NdeII	GATC	4 cut(s)	421, 478, 565, 679
NgoMIV	GCCGGC	1 cut(s)	710
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	3 cut(s)	164, 579, 681
NmeAIII	GCCGAG	3 cut(s)	104, 500, 811
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PdiI	GCCGGC	1 cut(s)	712
PflFI	GACNNNGTC	1 cut(s)	501
PkrI	GCNGC	7 cut(s)	28, 37, 219, 367, 582, 784, 798
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	775
PscI	ACATGT	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	3 cut(s)	164, 579, 681
PspPI	GGNCC	2 cut(s)	638, 775
PspPPI	RGGWCCY	1 cut(s)	775
PsuI	RGATCY	2 cut(s)	478, 679
PsyI	GACNNNGTC	1 cut(s)	501
RsaI	GTAC	4 cut(s)	50, 158, 164, 701
RsaNI	GTAC	4 cut(s)	49, 157, 163, 700
SacII	CCGCGG	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	144, 261
SatI	GCNGC	7 cut(s)	27, 36, 218, 366, 581, 783, 797
Sau3AI	GATC	4 cut(s)	421, 478, 565, 679
Sau96I	GGNCC	2 cut(s)	638, 775
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	636
SfaNI	GCATC	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	579
Sfr303I	CCGCGG	1 cut(s)	170
SgrBI	CCGCGG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	775
Sse9I	AATT	3 cut(s)	175, 425, 694
SsiI	CCGC	9 cut(s)	8, 27, 82, 167, 169, 581, 592, 783, 796
SspDI	GGCGCC	1 cut(s)	577
SspMI	CTAG	3 cut(s)	132, 642, 812
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	300, 326
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	175, 425, 694
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	4 cut(s)	29, 583, 785, 799
Tru1I	TTAA	2 cut(s)	144, 261
Tru9I	TTAA	2 cut(s)	144, 261
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	3 cut(s)	35, 217, 365
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	384
Tth111I	GACNNNGTC	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	2 cut(s)	175, 694
XceI	RCATGY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	802
XspI	CTAG	3 cut(s)	132, 642, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.