Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

43522196 .. 43526574

Gene Structure 4379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG300500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTGCAGCTTCTGAAGCCTGCGTTCACCATTCTACGTGATAAAGATTCAAAATGCTTTCTTATGTTGATACGTGGTACACATAGTATCAAAGATACACTAACTGCCACAACTGGTGCAGTGGCCCCTTTCCACCATTCGGTTTTGGATGATGGTGGAATAAACAACTTAGTCCTAGGATATGCTCACTGTGGGATGGTTTCTGCAGCCCGTTGGATTGCTCAGCTCAGTACTCCTTGCTTGCTTAAGGCTCTTGGTGAATATCCTGAGTATACAGTAAAGGGAGTGTTCGTCCTGATACAAGTCAGAGATGGGCTAGAGAAGTGGAAGAGCAAAAGCTTATTGGCAGTGGAGCACTGGATTTGCAGGGACATGCCTCCAATGTATGGAGCAACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

133

Amino Acids

14.7

Weight (kDa)

8.72

Isoelectric Point (pI)

23.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	22 - 93	9.6e-07	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	79, 232
AfiI	CCNNNNNNNGG	2 cut(s)	139, 386
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	4 cut(s)	10, 226, 339, 399
AluI	AGCT	4 cut(s)	10, 226, 339, 399
Alw21I	GWGCWC	1 cut(s)	357
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	7, 206
AspA2I	CCTAGG	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	19, 269
AvrII	CCTAGG	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	19, 218
BccI	CCATC	3 cut(s)	146, 190, 305
BfaI	CTAG	2 cut(s)	176, 317
BfmI	CTRYAG	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	8, 207
BlnI	CCTAGG	1 cut(s)	175
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	2 cut(s)	9, 208
BmcAI	AGTACT	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaAI	YACGTR	2 cut(s)	38, 74
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 386
Bse1I	ACTGG	2 cut(s)	118, 362
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	154, 201
BseLI	CCNNNNNNNGG	2 cut(s)	139, 386
BseMII	CTCAG	3 cut(s)	236, 241, 258
BseNI	ACTGG	2 cut(s)	118, 362
BseXI	GCAGC	2 cut(s)	19, 218
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	139, 386
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	3 cut(s)	235, 240, 259
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	118, 362
BssECI	CCNNGG	1 cut(s)	175
BssNAI	GTATAC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	191, 277
Bst6I	CTCTTC	1 cut(s)	323
BstAFI	CTTAAG	1 cut(s)	245
BstBAI	YACGTR	2 cut(s)	38, 74
BstC8I	GCNNGC	2 cut(s)	21, 242
BstDEI	CTNAG	4 cut(s)	169, 222, 227, 267
BstF5I	GGATG	2 cut(s)	154, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	19, 218
BstZ17I	GTATAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	154, 201
BtsI	GCAGTG	2 cut(s)	126, 354
BtsIMutI	CAGTG	4 cut(s)	126, 187, 354, 355
Cac8I	GCNNGC	2 cut(s)	21, 242
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	78, 231
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	9 cut(s)	10, 19, 125, 209, 226, 251, 316, 339, 399
CviKI_1	RGCY	9 cut(s)	10, 19, 125, 209, 226, 251, 316, 339, 399
CviQI	GTAC	2 cut(s)	78, 231
DdeI	CTNAG	4 cut(s)	169, 222, 227, 267
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	376
FaiI	YATR	6 cut(s)	65, 84, 183, 273, 374, 387
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	2 cut(s)	8, 207
FokI	GGATG	2 cut(s)	161, 208
Fsp4HI	GCNGC	2 cut(s)	8, 207
FspBI	CTAG	2 cut(s)	176, 317
GluI	GCNGC	2 cut(s)	8, 207
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	2 cut(s)	19, 269
Hpy166II	GTNNAC	3 cut(s)	27, 80, 273
Hpy188I	TCNGA	2 cut(s)	15, 308
Hpy188III	TCNNGA	2 cut(s)	266, 295
Hpy8I	GTNNAC	3 cut(s)	27, 80, 273
HpyCH4III	ACNGT	2 cut(s)	191, 277
HpyCH4IV	ACGT	2 cut(s)	37, 73
HpyCH4V	TGCA	4 cut(s)	7, 119, 206, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	4 cut(s)	169, 222, 227, 267
HpySE526I	ACGT	2 cut(s)	37, 73
Hsp92II	CATG	1 cut(s)	376
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	2 cut(s)	352, 389
LpnPI	CCDG	6 cut(s)	33, 99, 279, 308, 343, 352
Lsp1109I	GCAGC	2 cut(s)	19, 218
MaeI	CTAG	2 cut(s)	176, 317
MaeII	ACGT	2 cut(s)	37, 73
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	399
MspCI	CTTAAG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	1 cut(s)	126
NspI	RCATGY	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	9, 208
Ppu21I	YACGTR	2 cut(s)	38, 74
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	399
RsaI	GTAC	2 cut(s)	79, 232
RsaNI	GTAC	2 cut(s)	78, 231
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	8, 207
Sau96I	GGNCC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	6 cut(s)	12, 40, 76, 228, 341, 401
SfcI	CTRYAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SspMI	CTAG	2 cut(s)	176, 317
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	191, 277
TaiI	ACGT	2 cut(s)	40, 76
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	4 cut(s)	126, 194, 354, 362
TseI	GCWGC	2 cut(s)	7, 206
TspRI	CASTG	4 cut(s)	126, 194, 354, 362
Van91I	CCANNNNNTGG	1 cut(s)	386
Vha464I	CTTAAG	1 cut(s)	245
XceI	RCATGY	1 cut(s)	376
XmaJI	CCTAGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	2 cut(s)	176, 317
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.