Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

60443525 .. 60443779

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCTTGGTGGTGGTGCCGTGGCGAAAGGGCCGGGTTCTCCTTCGTTCGATGGGTGGTGGTTGAGGTCGACATCGCGGCCCGATTGTGAGAGCATCCCGGATCCCGCCGTACGGGATCTTTTTCGTCTTTCTCTGCGAGCACTCCTTAGTGGAGACCTTGGTGTGTGGGGCGACGATGGTGGAGCGCCGGTGGTGGACCGACTAGGGAGGTGGTTGTCCGGAGGCGGGACGACGGAACCGGTGATGATGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

8.78

Weight (kDa)

4.76

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	3 cut(s)	76, 105, 225
AclWI	GGATC	3 cut(s)	95, 108, 123
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	111, 225
AgeI	ACCGGT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	3 cut(s)	95, 108, 123
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	2 cut(s)	29, 77
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	29, 78, 196
AsuC2I	CCSGG	2 cut(s)	33, 98
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	196
BamHI	GGATCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	142
BccI	CCATC	3 cut(s)	44, 170, 241
BceAI	ACGGC	2 cut(s)	2, 92
BcnI	CCSGG	2 cut(s)	33, 98
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	2 cut(s)	203, 253
BfoI	RGCGCY	1 cut(s)	188
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	33, 98
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	29, 78, 196
BmiI	GGNNCC	3 cut(s)	16, 102, 237
BmrFI	CCNGG	2 cut(s)	33, 98
BmsI	GCATC	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	33, 98
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	18, 157
BsaWI	WCCGGW	2 cut(s)	218, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 225
Bse118I	RCCGGY	2 cut(s)	187, 238
BseAI	TCCGGA	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	18, 157
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	111, 225
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	31, 79
BshNI	GGYRCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	5 cut(s)	32, 98, 188, 219, 239
BsiWI	CGTACG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	111, 225
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	31, 79
Bso31I	GGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	2 cut(s)	100, 115
BspACI	CCGC	3 cut(s)	76, 105, 225
BspANI	GGCC	2 cut(s)	31, 79
BspEI	TCCGGA	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	16, 102, 237
BspPI	GGATC	3 cut(s)	95, 108, 123
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	147
BsrFI	RCCGGY	2 cut(s)	187, 238
BssAI	RCCGGY	2 cut(s)	187, 238
BssECI	CCNNGG	2 cut(s)	18, 157
BssMI	GATC	2 cut(s)	100, 115
BssT1I	CCWWGG	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	2 cut(s)	103, 118
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	100, 115
BstSCI	CCNGG	2 cut(s)	31, 96
BstUI	CGCG	1 cut(s)	76
BstX2I	RGATCY	2 cut(s)	100, 115
BstYI	RGATCY	2 cut(s)	100, 115
BsuRI	GGCC	2 cut(s)	31, 79
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	2 cut(s)	187, 238
Cfr13I	GGNCC	3 cut(s)	29, 78, 196
Csp6I	GTAC	1 cut(s)	110
CspAI	ACCGGT	1 cut(s)	238
CviJI	RGCY	2 cut(s)	31, 79
CviKI_1	RGCY	2 cut(s)	31, 79
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	102, 117
DpnII	GATC	2 cut(s)	100, 115
Eco130I	CCWWGG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaqI	GGGAC	1 cut(s)	241
FauI	CCCGC	2 cut(s)	112, 218
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	2 cut(s)	203, 253
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	31, 79
HapII	CCGG	5 cut(s)	32, 98, 188, 219, 239
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HpaII	CCGG	5 cut(s)	32, 98, 188, 219, 239
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	69, 196
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	2 cut(s)	69, 196
Hpy99I	CGWCG	2 cut(s)	176, 235
HpyAV	CCTTC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	100, 115
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	4 cut(s)	45, 111, 201, 232
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	203, 253
MalI	GATC	2 cut(s)	102, 117
MboI	GATC	2 cut(s)	100, 115
MflI	RGATCY	2 cut(s)	100, 115
MhlI	GDGCHC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	57, 201, 215
MroI	TCCGGA	1 cut(s)	218
MspI	CCGG	5 cut(s)	32, 98, 188, 219, 239
MspR9I	CCNGG	2 cut(s)	33, 98
MvnI	CGCG	1 cut(s)	76
NciI	CCSGG	2 cut(s)	33, 98
NdeII	GATC	2 cut(s)	100, 115
NlaIV	GGNNCC	3 cut(s)	16, 102, 237
Pfl23II	CGTACG	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	96
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	78
PspLI	CGTACG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	16, 102, 237
PspPI	GGNCC	3 cut(s)	29, 78, 196
PsuI	RGATCY	2 cut(s)	100, 115
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SalI	GTCGAC	1 cut(s)	67
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	100, 115
Sau96I	GGNCC	3 cut(s)	29, 78, 196
ScrFI	CCNGG	2 cut(s)	33, 98
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	3 cut(s)	68, 159, 212
SfaNI	GCATC	1 cut(s)	102
SgrAI	CRCCGGYG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	196
SsiI	CCGC	3 cut(s)	76, 105, 225
SspMI	CTAG	2 cut(s)	203, 253
StyD4I	CCNGG	2 cut(s)	31, 96
StyI	CCWWGG	1 cut(s)	157
TaqI	TCGA	2 cut(s)	48, 68
TaqII	GACCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	68
XspI	CTAG	2 cut(s)	203, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.