Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377889.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

402 .. 1075

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377889.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggcggcggggacaatggcgaccgccgccggagctgctgtgattctgtactacatgtttggccggagagcgtcgtcgaaggacggcgttgaggacgacgacgacgacaatcggagcggagatttctccaagtcgagatcggctaggaggaggctttctcggcgaccggctcaggcgccggccacgtggatcgagtcaatgtccaccttgtccgatacgctgcgtttcacttactctgagactctagggaaatggccgatcggcgacttggccttcggcattaactacctcatgcgtaggcaggggaatttacaagtggcgagtgtgtatgctggtagtgatagtgtgcagctcaaaggcgctaagattattgaggaactaaattattacttgaagctgttgacgctttgttatctgttttccaagaagccctttccggtgtttttagagtccggcggtttctctatggaagatgtccttcttcagaagtccaaggctgcggttcgtaagctcttaacttcgttctatgtaactgcatttggttatgtgcttacattgcccttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

188

Amino Acids

20.9

Weight (kDa)

9.4

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccBSI	CCGCTC	1 cut(s)	117
AciI	CCGC	7 cut(s)	5, 8, 24, 27, 117, 456, 500
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	3 cut(s)	61, 180, 254
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	467
AcvI	CACGTG	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	4 cut(s)	35, 352, 397, 511
AluI	AGCT	4 cut(s)	35, 352, 397, 511
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	4 cut(s)	61, 180, 254, 270
ApeKI	GCWGC	4 cut(s)	35, 220, 349, 497
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspLEI	GCGC	2 cut(s)	178, 362
BanI	GGYRCC	1 cut(s)	175
BbrPI	CACGTG	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	22, 207, 361, 484
BceAI	ACGGC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	144, 245
BfoI	RGCGCY	2 cut(s)	179, 363
BisI	GCNGC	6 cut(s)	6, 27, 36, 221, 350, 498
BlsI	GCNGC	6 cut(s)	7, 28, 37, 222, 351, 499
BmiI	GGNNCC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
Bpu10I	CCTNAGC	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse118I	RCCGGY	2 cut(s)	166, 178
Bse3DI	GCAATG	1 cut(s)	554
BseDI	CCNNGG	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	2 cut(s)	185, 228
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	22, 207, 361, 484
BsgI	GTGCAG	1 cut(s)	368
Bsh1285I	CGRYCG	3 cut(s)	24, 167, 261
BshFI	GGCC	4 cut(s)	63, 182, 256, 272
BshNI	GGYRCC	1 cut(s)	175
BsiEI	CGRYCG	3 cut(s)	24, 167, 261
BsiSI	CCGG	6 cut(s)	30, 64, 167, 179, 437, 453
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	63, 182, 256, 272
Bsp143I	GATC	3 cut(s)	137, 189, 258
BspACI	CCGC	7 cut(s)	5, 8, 24, 27, 117, 456, 500
BspANI	GGCC	4 cut(s)	63, 182, 256, 272
BspCNI	CTCAG	2 cut(s)	184, 229
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	554
BsrFI	RCCGGY	2 cut(s)	166, 178
BssAI	RCCGGY	2 cut(s)	166, 178
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	137, 189, 258
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	171, 237, 363
BstH2I	RGCGCY	2 cut(s)	179, 363
BstHHI	GCGC	2 cut(s)	178, 362
BstKTI	GATC	3 cut(s)	140, 192, 261
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	137, 189, 258
BstMCI	CGRYCG	3 cut(s)	24, 167, 261
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 32, 35, 160, 403, 556
BstNSI	RCATGY	1 cut(s)	58
BstV1I	GCAGC	4 cut(s)	22, 207, 361, 484
BsuRI	GGCC	4 cut(s)	63, 182, 256, 272
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	178, 362
Cfr10I	RCCGGY	2 cut(s)	166, 178
CseI	GACGC	2 cut(s)	60, 412
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	2 cut(s)	55, 292
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	171, 237, 363
DinI	GGCGCC	1 cut(s)	177
DpnI	GATC	3 cut(s)	139, 191, 260
DpnII	GATC	3 cut(s)	137, 189, 258
EaeI	YGGCCR	3 cut(s)	61, 180, 254
Eco130I	CCWWGG	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	467
Eco72I	CACGTG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	492
EgeI	GGCGCC	1 cut(s)	177
EheI	GGCGCC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	58, 295
FaiI	YATR	6 cut(s)	56, 293, 330, 467, 528, 546
FalI	AAGNNNNNCTT	4 cut(s)	416, 448, 462, 494
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	54, 291
Fnu4HI	GCNGC	6 cut(s)	6, 27, 36, 221, 350, 498
Fsp4HI	GCNGC	6 cut(s)	6, 27, 36, 221, 350, 498
FspBI	CTAG	2 cut(s)	144, 245
GlaI	GCGC	2 cut(s)	177, 361
GluI	GCNGC	6 cut(s)	6, 27, 36, 221, 350, 498
HaeII	RGCGCY	2 cut(s)	179, 363
HaeIII	GGCC	4 cut(s)	63, 182, 256, 272
HapII	CCGG	6 cut(s)	30, 64, 167, 179, 437, 453
HgaI	GACGC	2 cut(s)	60, 412
HhaI	GCGC	2 cut(s)	178, 362
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	58, 295
Hin6I	GCGC	2 cut(s)	176, 360
HinP1I	GCGC	2 cut(s)	176, 360
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	43, 194, 241, 449
HpaII	CCGG	6 cut(s)	30, 64, 167, 179, 437, 453
Hpy166II	GTNNAC	2 cut(s)	204, 402
Hpy188I	TCNGA	5 cut(s)	114, 214, 238, 486, 566
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	2 cut(s)	204, 402
Hpy99I	CGWCG	5 cut(s)	76, 79, 101, 104, 107
HpyAV	CCTTC	3 cut(s)	73, 283, 488
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	349, 536
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 32, 35, 160, 403, 556
HpyF3I	CTNAG	3 cut(s)	171, 237, 363
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	58, 295
HspAI	GCGC	2 cut(s)	176, 360
KasI	GGCGCC	1 cut(s)	175
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	137, 189, 258
LmnI	GCTCC	2 cut(s)	32, 114
LpnPI	CCDG	9 cut(s)	43, 77, 158, 180, 192, 287, 318, 450, 466
Lsp1109I	GCAGC	4 cut(s)	22, 207, 361, 484
MaeI	CTAG	2 cut(s)	144, 245
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	3 cut(s)	139, 191, 260
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	3 cut(s)	137, 189, 258
MboII	GAAGA	2 cut(s)	473, 482
MluCI	AATT	2 cut(s)	307, 382
Mly113I	GGCGCC	1 cut(s)	176
MlyI	GAGTC	3 cut(s)	203, 235, 458
MnlI	CCTC	5 cut(s)	85, 141, 144, 299, 367
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	2 cut(s)	282, 515
MspI	CCGG	6 cut(s)	30, 64, 167, 179, 437, 453
MwoI	GCNNNNNNNGC	6 cut(s)	26, 32, 35, 160, 403, 556
NaeI	GCCGGC	1 cut(s)	180
NarI	GGCGCC	1 cut(s)	176
NdeII	GATC	3 cut(s)	137, 189, 258
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	58, 295
NlaIV	GGNNCC	1 cut(s)	177
NmeAIII	GCCGAG	1 cut(s)	139
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	6 cut(s)	7, 28, 37, 222, 351, 499
Ple19I	CGATCG	1 cut(s)	261
PleI	GAGTC	3 cut(s)	202, 235, 457
PluTI	GGCGCC	1 cut(s)	179
PmaCI	CACGTG	1 cut(s)	186
PmlI	CACGTG	1 cut(s)	186
PpsI	GAGTC	3 cut(s)	202, 235, 457
Ppu21I	YACGTR	1 cut(s)	186
PscI	ACATGT	1 cut(s)	54
PspCI	CACGTG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	177
PvuI	CGATCG	1 cut(s)	261
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	282, 515
SatI	GCNGC	6 cut(s)	6, 27, 36, 221, 350, 498
Sau3AI	GATC	3 cut(s)	137, 189, 258
SchI	GAGTC	3 cut(s)	203, 235, 458
SetI	ASST	7 cut(s)	37, 188, 209, 291, 354, 399, 513
SfoI	GGCGCC	1 cut(s)	177
Sse9I	AATT	2 cut(s)	307, 382
SsiI	CCGC	7 cut(s)	5, 8, 24, 27, 117, 456, 500
SspDI	GGCGCC	1 cut(s)	175
SspMI	CTAG	2 cut(s)	144, 245
StyI	CCWWGG	1 cut(s)	492
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	3 cut(s)	77, 134, 192
TasI	AATT	2 cut(s)	307, 382
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	8, 29
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	282, 515
Tru9I	TTAA	2 cut(s)	282, 515
TseI	GCWGC	4 cut(s)	35, 220, 349, 497
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	2 cut(s)	144, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.