Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

31421729 .. 31424534

Gene Structure 2806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGCGGCCACCACCGCCGGAGCTGCTATGATTCTATACTACATGTTTGGCCAGAGAGCGTCGTCGAAGCGGAGATTTCTCCAAGTCGAGATCGGCGAGGAGGAGGCTTTCTCAGCGACCGGCTCAGGCGCCGGAAATGGCCGATCGGCGACTTGGCCTTCGGCATTAACTACCTCATGCGTAGGCAGGGGAATTTACAAGTGGCGAAAACCGTTTCCGGTGTTTTTAGAGTCCAGCGGTTTCTCTATGGAAGATGTCCTTTTTCAGAAGCCCAAGGCTGTGCTTCTGGAGCCTGCGTTCACCATTCTACGTGATAAAGATTCAAAATGCTTTCTTATGTTGATATGTGGTACACATAGTATCAAAGATACACTAACTGCCACAACTGGTGCAGTGGCCCCTTTCCACCATTCGGTTTTGGATGATGGTGGAATAAGCAACTTAGTCCTAGGATATGCTCATTGTGGGATGGTTGCTGCAACCCGTTGGATTGCTCAGCTCAGTACTCCTTGCTTGCTTAAGGCTCTTGGTGAATATCCTGAGTATACAGTAAAGGGAGTGTTCGTCCTGATACAAGTCAGAGATGGGCTAGAGAAGTGGAAGAGAAAAAGCTTATTGGCAGTGGAGCACTGGATTTGCAGGGACATGCTTCCAATGTATGGAGCAACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

225

Amino Acids

24.6

Weight (kDa)

8.88

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	548
AciI	CCGC	4 cut(s)	8, 18, 73, 240
AcoI	YGGCCR	3 cut(s)	9, 52, 142
AcsI	RAATTY	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	355, 508
AfiI	CCNNNNNNNGG	2 cut(s)	415, 662
AflII	CTTAAG	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	327
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	4 cut(s)	26, 502, 615, 675
AluI	AGCT	4 cut(s)	26, 502, 615, 675
Alw21I	GWGCWC	1 cut(s)	633
AoxI	GGCC	5 cut(s)	9, 52, 142, 158, 399
ApeKI	GCWGC	3 cut(s)	5, 26, 479
ApoI	RAATTY	1 cut(s)	195
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspA2I	CCTAGG	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	295, 545
AvrII	CCTAGG	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	13, 466
BccI	CCATC	3 cut(s)	422, 466, 581
BfaI	CTAG	2 cut(s)	452, 593
BfoI	RGCGCY	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	521
BisI	GCNGC	4 cut(s)	6, 9, 27, 480
BlnI	CCTAGG	1 cut(s)	451
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	4 cut(s)	7, 10, 28, 481
BmcAI	AGTACT	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	3 cut(s)	133, 294, 402
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	276, 451
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 662
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	394, 638
BseDI	CCNNGG	2 cut(s)	276, 451
BseGI	GGATG	2 cut(s)	430, 477
BseLI	CCNNNNNNNGG	2 cut(s)	415, 662
BseMII	CTCAG	5 cut(s)	129, 141, 512, 517, 534
BseNI	ACTGG	2 cut(s)	394, 638
BseRI	GAGGAG	2 cut(s)	116, 119
BseXI	GCAGC	2 cut(s)	13, 466
BsgI	GTGCAG	1 cut(s)	414
Bsh1285I	CGRYCG	2 cut(s)	123, 149
BshFI	GGCC	5 cut(s)	11, 54, 144, 160, 401
BshNI	GGYRCC	1 cut(s)	131
BsiEI	CGRYCG	2 cut(s)	123, 149
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	4 cut(s)	21, 123, 135, 221
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	415, 662
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	5 cut(s)	11, 54, 144, 160, 401
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	2 cut(s)	93, 146
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	4 cut(s)	8, 18, 73, 240
BspANI	GGCC	5 cut(s)	11, 54, 144, 160, 401
BspCNI	CTCAG	5 cut(s)	128, 140, 511, 516, 535
BspLI	GGNNCC	3 cut(s)	133, 294, 402
BspT107I	GGYRCC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	394, 638
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	276, 451
BssMI	GATC	2 cut(s)	93, 146
BssNAI	GTATAC	1 cut(s)	549
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	276, 451
Bst1107I	GTATAC	1 cut(s)	549
Bst4CI	ACNGT	2 cut(s)	216, 553
Bst6I	CTCTTC	1 cut(s)	599
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	297, 518
BstDEI	CTNAG	6 cut(s)	115, 127, 445, 498, 503, 543
BstF5I	GGATG	2 cut(s)	430, 477
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	96, 149
BstMBI	GATC	2 cut(s)	93, 146
BstMCI	CGRYCG	2 cut(s)	123, 149
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 26, 116, 292
BstNSI	RCATGY	2 cut(s)	49, 652
BstV1I	GCAGC	2 cut(s)	13, 466
BstZ17I	GTATAC	1 cut(s)	549
BsuRI	GGCC	5 cut(s)	11, 54, 144, 160, 401
BtsCI	GGATG	2 cut(s)	430, 477
BtsI	GCAGTG	2 cut(s)	402, 630
BtsIMutI	CAGTG	3 cut(s)	402, 630, 631
Cac8I	GCNNGC	2 cut(s)	297, 518
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	354, 507
CviAII	CATG	3 cut(s)	46, 180, 649
CviQI	GTAC	2 cut(s)	354, 507
DdeI	CTNAG	6 cut(s)	115, 127, 445, 498, 503, 543
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	95, 148
DpnII	GATC	2 cut(s)	93, 146
EaeI	YGGCCR	3 cut(s)	9, 52, 142
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
Eco130I	CCWWGG	2 cut(s)	276, 451
EcoT14I	CCWWGG	2 cut(s)	276, 451
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	2 cut(s)	276, 451
FaeI	CATG	3 cut(s)	49, 183, 652
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	3 cut(s)	45, 179, 648
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	4 cut(s)	6, 9, 27, 480
FokI	GGATG	2 cut(s)	437, 484
Fsp4HI	GCNGC	4 cut(s)	6, 9, 27, 480
FspBI	CTAG	2 cut(s)	452, 593
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	4 cut(s)	6, 9, 27, 480
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	5 cut(s)	11, 54, 144, 160, 401
HapII	CCGG	4 cut(s)	21, 123, 135, 221
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	49, 183, 652
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	613
HinfI	GANTC	3 cut(s)	34, 233, 323
HpaII	CCGG	4 cut(s)	21, 123, 135, 221
HphI	GGTGA	2 cut(s)	295, 545
Hpy166II	GTNNAC	3 cut(s)	303, 356, 549
Hpy188I	TCNGA	2 cut(s)	270, 584
Hpy188III	TCNNGA	4 cut(s)	91, 290, 542, 571
Hpy8I	GTNNAC	3 cut(s)	303, 356, 549
Hpy99I	CGWCG	2 cut(s)	67, 70
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	2 cut(s)	216, 553
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	395, 482, 642
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 26, 116, 292
HpyF3I	CTNAG	6 cut(s)	115, 127, 445, 498, 503, 543
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	49, 183, 652
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	93, 146
LmnI	GCTCC	4 cut(s)	23, 292, 628, 665
Lsp1109I	GCAGC	2 cut(s)	13, 466
MaeI	CTAG	2 cut(s)	452, 593
MaeII	ACGT	1 cut(s)	313
MalI	GATC	2 cut(s)	95, 148
MboI	GATC	2 cut(s)	93, 146
MboII	GAAGA	2 cut(s)	266, 616
MhlI	GDGCHC	1 cut(s)	633
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	1 cut(s)	195
MluNI	TGGCCA	1 cut(s)	54
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	4 cut(s)	94, 97, 100, 187
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	2 cut(s)	170, 522
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	240, 675
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	4 cut(s)	21, 123, 135, 221
MwoI	GCNNNNNNNGC	4 cut(s)	17, 26, 116, 292
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	93, 146
NlaIII	CATG	3 cut(s)	49, 183, 652
NlaIV	GGNNCC	3 cut(s)	133, 294, 402
NspI	RCATGY	2 cut(s)	49, 652
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	34, 323
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	4 cut(s)	7, 10, 28, 481
Ple19I	CGATCG	1 cut(s)	149
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	314
PscI	ACATGT	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	133, 294, 402
PspPI	GGNCC	1 cut(s)	400
PvuI	CGATCG	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	675
RsaI	GTAC	2 cut(s)	355, 508
RsaNI	GTAC	2 cut(s)	354, 507
SaqAI	TTAA	2 cut(s)	170, 522
SatI	GCNGC	4 cut(s)	6, 9, 27, 480
Sau3AI	GATC	2 cut(s)	93, 146
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	6 cut(s)	28, 179, 316, 504, 617, 677
SfoI	GGCGCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	4 cut(s)	8, 18, 73, 240
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	452, 593
StyI	CCWWGG	2 cut(s)	276, 451
TaaI	ACNGT	2 cut(s)	216, 553
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	68, 90
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	34, 323
Tru1I	TTAA	2 cut(s)	170, 522
Tru9I	TTAA	2 cut(s)	170, 522
TscAI	CASTG	3 cut(s)	402, 630, 638
TseI	GCWGC	3 cut(s)	5, 26, 479
TspRI	CASTG	3 cut(s)	402, 630, 638
Van91I	CCANNNNNTGG	1 cut(s)	662
Vha464I	CTTAAG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	2 cut(s)	49, 652
XmaJI	CCTAGG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	548
XspI	CTAG	2 cut(s)	452, 593
ZrmI	AGTACT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.