Rw1G017810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001173
Physical Location & Seq
Reverse (-)
39493542 .. 39496295
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017810.1

Sequence Viewer

Length: 150 bp
ATGGCGGCGACCACCGCCGCCGGAGCTGCTAGAGTGTTCGTCCTGATACAAGTCAGAGATGGGCTAGAGAAGTGGAAGAGCAAAAGCTTATTGGCAGTGGAGCACTGGATTTGCAGGGACATGCCTCCAATGTATGGAGCAATCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.39

Weight (kDa)

9.1

Isoelectric Point (pI)

19.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AciI CCGC 3 cut(s) 5, 15, 18
AfiI CCNNNNNNNGG 1 cut(s) 134
AluBI AGCT 3 cut(s) 26, 87, 147
AluI AGCT 3 cut(s) 26, 87, 147
Alw21I GWGCWC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 53
BfaI CTAG 2 cut(s) 30, 65
BisI GCNGC 3 cut(s) 6, 18, 27
BlsI GCNGC 3 cut(s) 7, 19, 28
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 105
BspACI CCGC 3 cut(s) 5, 15, 18
BspQI GCTCTTC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 26
BstNSI RCATGY 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 103
CviAII CATG 1 cut(s) 121
CviJI RGCY 4 cut(s) 26, 64, 87, 147
CviKI_1 RGCY 4 cut(s) 26, 64, 87, 147
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
FaeI CATG 1 cut(s) 124
FaiI YATR 2 cut(s) 122, 135
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 6, 18, 27
Fsp4HI GCNGC 3 cut(s) 6, 18, 27
FspBI CTAG 2 cut(s) 30, 65
GluI GCNGC 3 cut(s) 6, 18, 27
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 85
HpaII CCGG 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 26
Hsp92II CATG 1 cut(s) 124
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 3 cut(s) 23, 100, 137
LpnPI CCDG 4 cut(s) 34, 56, 91, 100
Lsp1109I GCAGC 1 cut(s) 13
MaeI CTAG 2 cut(s) 30, 65
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 105
MnlI CCTC 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 26
NlaIII CATG 1 cut(s) 124
NspI RCATGY 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 3 cut(s) 7, 19, 28
PvuII CAGCTG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 71
SatI GCNGC 3 cut(s) 6, 18, 27
SduI GDGCHC 1 cut(s) 105
SetI ASST 3 cut(s) 28, 89, 149
SgeI CNNG 8 cut(s) 33, 42, 55, 62, 77, 118, 127, 133
SsiI CCGC 3 cut(s) 5, 15, 18
SspMI CTAG 2 cut(s) 30, 65
TauI GCSGC 2 cut(s) 8, 20
TscAI CASTG 2 cut(s) 102, 110
TseI GCWGC 1 cut(s) 26
TspRI CASTG 2 cut(s) 102, 110
Van91I CCANNNNNTGG 1 cut(s) 134
XceI RCATGY 1 cut(s) 124
XspI CTAG 2 cut(s) 30, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.