Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

34130199 .. 34135318

Gene Structure 5120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG272200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAATTACGATGGAGAGCGTCGTCAAAGTGGAGAATTCTTCAAGTCAAGATCGGCGAGGAGGAGGCTTTCTAGGCAACCGGCTCAGTTGCCGGCCACGTGGATCGAGTCAATGTCCACCTTGTCCAATACGCTGTGTTTCACTTACTTTAAGACTCTAGGGAAATGGCCAATCGGCGACTTGGCCTTCGGTATTAACTACCTCATGCGTAGGCAGTATCAAAGATACACTAACTGCCACAACTGGTGCAGTGGCCCCTTTCCACCGTTCGGTTTGGATGATGGTGGAATAAGCAACTTAGTCCTAGGATATGCTCACTGTGGGATGGTTGCTGCAGCCCGTTGGATTGCTCAGCTCAGTTCTCCTTGCTTGGTTAAGGCTCTTGGTGAATATCCTAAGTATACAGTAAAGGAGAATGTGGTGAAGTTAATCCAAAAAAATTTAAGTGAAGTTACACATAATGACGCTCGCATAGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

160

Amino Acids

18.23

Weight (kDa)

9.42

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	23 - 77	2.4e-08	Lipase 3 N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	401
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	2 cut(s)	93, 167
AcsI	RAATTY	2 cut(s)	35, 439
AcvI	CACGTG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	4 cut(s)	93, 167, 183, 253
ApeKI	GCWGC	2 cut(s)	332, 335
ApoI	RAATTY	2 cut(s)	35, 439
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspA2I	CCTAGG	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	398, 433
AvrII	CCTAGG	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	169
BbrPI	CACGTG	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	319, 347
BccI	CCATC	3 cut(s)	5, 275, 319
BfaI	CTAG	3 cut(s)	72, 158, 305
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	2 cut(s)	333, 336
BlnI	CCTAGG	1 cut(s)	304
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	2 cut(s)	334, 337
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	256
Bpu1102I	GCTNAGC	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	2 cut(s)	79, 91
Bse1I	ACTGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	2 cut(s)	283, 330
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	3 cut(s)	98, 365, 370
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	73, 76
BseXI	GCAGC	2 cut(s)	319, 347
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	4 cut(s)	95, 169, 185, 255
BsiSI	CCGG	2 cut(s)	80, 92
BslI	CCNNNNNNNGG	1 cut(s)	269
BsnI	GGCC	4 cut(s)	95, 169, 185, 255
Bsp143I	GATC	2 cut(s)	50, 102
Bsp1720I	GCTNAGC	1 cut(s)	351
BspANI	GGCC	4 cut(s)	95, 169, 185, 255
BspCNI	CTCAG	3 cut(s)	97, 364, 369
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	110
BsrFI	RCCGGY	2 cut(s)	79, 91
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	2 cut(s)	79, 91
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	50, 102
BssNAI	GTATAC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	304
Bst1107I	GTATAC	1 cut(s)	402
Bst4CI	ACNGT	3 cut(s)	267, 320, 406
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	93, 469
BstDEI	CTNAG	5 cut(s)	84, 298, 351, 356, 396
BstF5I	GGATG	2 cut(s)	283, 330
BstKTI	GATC	2 cut(s)	53, 105
BstMBI	GATC	2 cut(s)	50, 102
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	319, 347
BstZ17I	GTATAC	1 cut(s)	402
BsuRI	GGCC	4 cut(s)	95, 169, 185, 255
BtsCI	GGATG	2 cut(s)	283, 330
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	256, 316
Cac8I	GCNNGC	2 cut(s)	93, 469
Cfr10I	RCCGGY	2 cut(s)	79, 91
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	2 cut(s)	8, 473
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	9 cut(s)	67, 83, 95, 169, 185, 255, 338, 355, 380
CviKI_1	RGCY	9 cut(s)	67, 83, 95, 169, 185, 255, 338, 355, 380
DdeI	CTNAG	5 cut(s)	84, 298, 351, 356, 396
DpnI	GATC	2 cut(s)	52, 104
DpnII	GATC	2 cut(s)	50, 102
EaeI	YGGCCR	2 cut(s)	93, 167
Eco130I	CCWWGG	1 cut(s)	304
Eco72I	CACGTG	1 cut(s)	99
EcoRI	GAATTC	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	1 cut(s)	208
FaiI	YATR	5 cut(s)	206, 312, 402, 459, 473
FatI	CATG	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	333, 336
FokI	GGATG	2 cut(s)	290, 337
Fsp4HI	GCNGC	2 cut(s)	333, 336
FspBI	CTAG	3 cut(s)	72, 158, 305
GluI	GCNGC	2 cut(s)	333, 336
HaeIII	GGCC	4 cut(s)	95, 169, 185, 255
HapII	CCGG	2 cut(s)	80, 92
HgaI	GACGC	2 cut(s)	8, 473
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	107, 154
HpaII	CCGG	2 cut(s)	80, 92
HphI	GGTGA	2 cut(s)	398, 433
Hpy166II	GTNNAC	2 cut(s)	117, 402
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	2 cut(s)	117, 402
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	3 cut(s)	267, 320, 406
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	249, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	5 cut(s)	84, 298, 351, 356, 396
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	208
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	50, 102
LpnPI	CCDG	3 cut(s)	93, 105, 229
Lsp1109I	GCAGC	2 cut(s)	319, 347
MaeI	CTAG	3 cut(s)	72, 158, 305
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	2 cut(s)	52, 104
MboI	GATC	2 cut(s)	50, 102
MboII	GAAGA	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	169
MluCI	AATT	3 cut(s)	4, 35, 439
MluNI	TGGCCA	1 cut(s)	169
MlyI	GAGTC	2 cut(s)	116, 148
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	5 cut(s)	51, 54, 57, 212, 469
Mox20I	TGGCCA	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	169
MseI	TTAA	5 cut(s)	150, 195, 375, 428, 443
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	169
MspI	CCGG	2 cut(s)	80, 92
MwoI	GCNNNNNNNGC	1 cut(s)	73
NaeI	GCCGGC	1 cut(s)	93
NdeII	GATC	2 cut(s)	50, 102
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	256
PdiI	GCCGGC	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	334, 337
PleI	GAGTC	2 cut(s)	115, 148
PmaCI	CACGTG	1 cut(s)	99
PmlI	CACGTG	1 cut(s)	99
PpsI	GAGTC	2 cut(s)	115, 148
Ppu21I	YACGTR	1 cut(s)	99
PspCI	CACGTG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	5 cut(s)	150, 195, 375, 428, 443
SatI	GCNGC	2 cut(s)	333, 336
Sau3AI	GATC	2 cut(s)	50, 102
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	116, 148
SetI	ASST	5 cut(s)	101, 122, 204, 357, 480
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	4, 35, 439
SspMI	CTAG	3 cut(s)	72, 158, 305
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	3 cut(s)	267, 320, 406
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	4, 35, 439
Tru1I	TTAA	5 cut(s)	150, 195, 375, 428, 443
Tru9I	TTAA	5 cut(s)	150, 195, 375, 428, 443
TscAI	CASTG	2 cut(s)	256, 323
TseI	GCWGC	2 cut(s)	332, 335
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	256, 323
XapI	RAATTY	2 cut(s)	35, 439
XmaJI	CCTAGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	401
XspI	CTAG	3 cut(s)	72, 158, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.