Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

17945831 .. 17949323

Gene Structure 3493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCCTTTTTCAGAAGCCCAAGGCTGCGCTTCCTTCTGAAGCCTGCGTTCACCATTCTACGTGATAAAGATTCAAAATGCTTTCTTATGTTGATACGTGGTACACATAGTATCAAAGATACACTAACTGCCACAACTGGTGCAGTGGCCCCTTTCCACCATTCTGTTTTGGATGATGGTGGAATAAGCAACTTAGTCCTAGGATATGCTCACTGTGGGATGTTTGCTGCAGCCCGTTGGATTGCTCAGCTCAGTACTCCTTGCTTGCTTAAGTCTCTTGGTGAATATCCTGAGTATACAGTAAAGGTGAATGCCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

107

Amino Acids

11.82

Weight (kDa)

9.41

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	30 - 103	1.1e-06	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	103, 256
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	75
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	279
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	25, 227, 230
AspA2I	CCTAGG	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	43, 293, 319
AvrII	CCTAGG	1 cut(s)	199
BbvI	GCAGC	3 cut(s)	12, 214, 242
BccI	CCATC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	3 cut(s)	26, 228, 231
BlnI	CCTAGG	1 cut(s)	199
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	3 cut(s)	27, 229, 232
BmcAI	AGTACT	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	246
BsaAI	YACGTR	2 cut(s)	62, 98
BsaJI	CCNNGG	2 cut(s)	20, 199
Bse1I	ACTGG	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	20, 199
BseGI	GGATG	2 cut(s)	178, 225
BseMII	CTCAG	3 cut(s)	260, 265, 282
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	3 cut(s)	12, 214, 242
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	149
Bsp1720I	GCTNAGC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	3 cut(s)	259, 264, 283
BspHI	TCATGA	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	232
BspTI	CTTAAG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	20, 199
BssNAI	GTATAC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	20, 199
Bst1107I	GTATAC	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	215, 301
BstAFI	CTTAAG	1 cut(s)	269
BstBAI	YACGTR	2 cut(s)	62, 98
BstC8I	GCNNGC	2 cut(s)	45, 266
BstDEI	CTNAG	4 cut(s)	193, 246, 251, 291
BstF5I	GGATG	2 cut(s)	178, 225
BstHHI	GCGC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	3 cut(s)	12, 214, 242
BstZ17I	GTATAC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	178, 225
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 211
Cac8I	GCNNGC	2 cut(s)	45, 266
CciI	TCATGA	1 cut(s)	320
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	102, 255
CviAII	CATG	1 cut(s)	321
CviJI	RGCY	6 cut(s)	18, 25, 43, 149, 233, 250
CviKI_1	RGCY	6 cut(s)	18, 25, 43, 149, 233, 250
CviQI	GTAC	2 cut(s)	102, 255
DdeI	CTNAG	4 cut(s)	193, 246, 251, 291
Eco130I	CCWWGG	2 cut(s)	20, 199
Eco57I	CTGAAG	1 cut(s)	59
EcoT14I	CCWWGG	2 cut(s)	20, 199
ErhI	CCWWGG	2 cut(s)	20, 199
FaeI	CATG	1 cut(s)	324
FaiI	YATR	5 cut(s)	89, 108, 207, 297, 322
FatI	CATG	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	26, 228, 231
FokI	GGATG	2 cut(s)	185, 232
Fsp4HI	GCNGC	3 cut(s)	26, 228, 231
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	3 cut(s)	26, 228, 231
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	324
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	3 cut(s)	43, 293, 319
Hpy166II	GTNNAC	3 cut(s)	51, 104, 297
Hpy188I	TCNGA	2 cut(s)	14, 39
Hpy188III	TCNNGA	2 cut(s)	290, 321
Hpy8I	GTNNAC	3 cut(s)	51, 104, 297
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	215, 301
HpyCH4IV	ACGT	2 cut(s)	61, 97
HpyCH4V	TGCA	2 cut(s)	143, 230
HpyF3I	CTNAG	4 cut(s)	193, 246, 251, 291
HpySE526I	ACGT	2 cut(s)	61, 97
Hsp92II	CATG	1 cut(s)	324
HspAI	GCGC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	57, 123, 303
Lsp1109I	GCAGC	3 cut(s)	12, 214, 242
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	2 cut(s)	61, 97
MmeI	TCCRAC	1 cut(s)	218
MseI	TTAA	1 cut(s)	270
MspCI	CTTAAG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	1 cut(s)	150
PagI	TCATGA	1 cut(s)	320
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	27, 229, 232
Ppu21I	YACGTR	2 cut(s)	62, 98
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	103, 256
RsaNI	GTAC	2 cut(s)	102, 255
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	26, 228, 231
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	256
SetI	ASST	4 cut(s)	64, 100, 252, 309
SfcI	CTRYAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	20, 199
TaaI	ACNGT	2 cut(s)	215, 301
TaiI	ACGT	2 cut(s)	64, 100
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	150, 218
TseI	GCWGC	3 cut(s)	25, 227, 230
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	150, 218
Vha464I	CTTAAG	1 cut(s)	269
XmaJI	CCTAGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.