Rh5DG149700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001173
Physical Location & Seq
Reverse (-)
15191909 .. 15192100
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG149700.1

Sequence Viewer

Length: 192 bp
ATGCCTTCGCCTCTCCAATCAAAGTCGAATCCCAATCCCAAGAATTTGTACAGCCAAGTCGGCGATGAGGATTGGGGAAAGAGTGTGGAAGAGGAAGTAGTTAAGGAGGAGAAAGACGAGCAGGCCCTTGTCGCGCGCCGAGCTCCGGCGGTGTCGACATTGGCTGGAGGTAGGCAAGAGCTGCATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.9

Weight (kDa)

5.0

Isoelectric Point (pI)

80.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 155
AccII CGCG 2 cut(s) 134, 136
AciI CCGC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 43
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 143, 181
AluI AGCT 2 cut(s) 143, 181
Alw21I GWGCWC 1 cut(s) 145
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 43
AspLEI GCGC 2 cut(s) 136, 138
AspS9I GGNCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 145
BsePI GCGCGC 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 168
Bsh1236I CGCG 2 cut(s) 134, 136
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 145
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 48
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 125
BspFNI CGCG 2 cut(s) 134, 136
BsrGI TGTACA 1 cut(s) 48
BssHII GCGCGC 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 3 cut(s) 123, 136, 186
BstFNI CGCG 2 cut(s) 134, 136
BstHHI GCGC 2 cut(s) 136, 138
BstMWI GCNNNNNNNGC 4 cut(s) 60, 131, 140, 181
BstNSI RCATGY 1 cut(s) 188
BstUI CGCG 2 cut(s) 134, 136
BstV1I GCAGC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 78
Cac8I GCNNGC 3 cut(s) 123, 136, 186
CfoI GCGC 2 cut(s) 136, 138
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 54, 125, 143, 164, 181
CviKI_1 RGCY 5 cut(s) 54, 125, 143, 164, 181
CviQI GTAC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 182
GlaI GCGC 2 cut(s) 135, 137
GluI GCNGC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 146
HhaI GCGC 2 cut(s) 136, 138
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 2 cut(s) 134, 136
HinP1I GCGC 2 cut(s) 134, 136
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 131, 140, 181
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 2 cut(s) 134, 136
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 107, 150, 159
Lsp1109I GCAGC 1 cut(s) 168
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 1 cut(s) 43
MnlI CCTC 5 cut(s) 21, 61, 85, 100, 161
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 146
MvnI CGCG 2 cut(s) 134, 136
MwoI GCNNNNNNNGC 4 cut(s) 60, 131, 140, 181
NlaIII CATG 1 cut(s) 188
NmeAIII GCCGAG 1 cut(s) 164
NspI RCATGY 1 cut(s) 188
PaeI GCATGC 1 cut(s) 188
PauI GCGCGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 124
PteI GCGCGC 1 cut(s) 134
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 145
SalI GTCGAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 182
Sau96I GGNCC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 145, 172, 183
SphI GCATGC 1 cut(s) 188
Sse9I AATT 1 cut(s) 43
SsiI CCGC 1 cut(s) 149
SstI GAGCTC 1 cut(s) 145
TaqI TCGA 2 cut(s) 26, 155
TasI AATT 1 cut(s) 43
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 181
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.