Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

30465797 .. 30468445

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCCACCTTGTCCGATACGCTGCGTTTCACTTACTCTGAGACTCTATGGAAATGGCCGATCGGCGACTTGGCCTTCGGTATTAACTACCTCATGCGTAGGGAGGGGAATTTACAAGTGGCGAGTGTGTATGCTGGTAGTGATAGTGTGCAGCTTAAAGGCGCTAAGATTATTGAGGAACTAAATTATTACTTGAAGCTGTTGACGCTTTGTTATCTGTTTTCCAAGAAACTGCATCCGGTGTTTTTAGAGTCCAGCGGTTTCTCTATGGAAGATGTCCTTTTTCAGAAGCCCAAGGCGGTGCTTCTGAAGCCTGCATTCACCATTCTACGTGATAAAGATTCAAAATGCTTTCTTCTGTTAATACGTGGTACACATAGTATTAAAGATACACCAACTGCCGCAACTGGTGCAGTGGCCCCTTTCCACCATTCGGTTTTGGATGATGGTGGAATAAGCAACTTAGTCCTAGGATATGCTCACTGTGGGATGGTTGCTCCAACCCGGTGGATTGCTTTGCTCAGTACTTCTTGCTTGTTTAAGGCTCTTGGTGAATATCCTGAGTACACAGTAAAGGGAGTGTTCGTCCTGATACAAGTCAGAGATGGGCTAGAGAAGTGGAAGAGCAAAAGCTTATTGGCAGTAGAGCACTGGATTTGCAAGGACTTGCCTCCGATGTATGGAGCAACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

232

Amino Acids

25.79

Weight (kDa)

8.7

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	2 - 65	8.5e-10	Lipase 3 N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	258, 299, 402
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	3 cut(s)	373, 526, 566
AfiI	CCNNNNNNNGG	2 cut(s)	433, 680
AgsI	TTSAA	2 cut(s)	196, 345
AluBI	AGCT	4 cut(s)	154, 199, 633, 693
AluI	AGCT	4 cut(s)	154, 199, 633, 693
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	3 cut(s)	56, 72, 417
ApeKI	GCWGC	2 cut(s)	22, 151
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspA2I	CCTAGG	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	2 cut(s)	313, 563
AvrII	CCTAGG	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	2 cut(s)	9, 163
BccI	CCATC	3 cut(s)	440, 484, 599
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	470, 611
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	3 cut(s)	23, 152, 402
BlnI	CCTAGG	1 cut(s)	469
BlsI	GCNGC	3 cut(s)	24, 153, 403
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	505
BsaAI	YACGTR	2 cut(s)	332, 368
BsaJI	CCNNGG	2 cut(s)	294, 469
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 680
Bse1I	ACTGG	2 cut(s)	412, 656
BseDI	CCNNGG	2 cut(s)	294, 469
BseGI	GGATG	3 cut(s)	235, 448, 495
BseLI	CCNNNNNNNGG	2 cut(s)	433, 680
BseMII	CTCAG	3 cut(s)	30, 535, 552
BseNI	ACTGG	2 cut(s)	412, 656
BseXI	GCAGC	2 cut(s)	9, 163
BsgI	GTGCAG	2 cut(s)	170, 432
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	58, 74, 419
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	2 cut(s)	239, 505
BslI	CCNNNNNNNGG	2 cut(s)	433, 680
BsmAI	GTCTC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	58, 74, 419
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	3 cut(s)	258, 299, 402
BspANI	GGCC	3 cut(s)	58, 74, 419
BspCNI	CTCAG	3 cut(s)	31, 534, 553
BspLI	GGNNCC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	617
BsrI	ACTGG	2 cut(s)	412, 656
BssECI	CCNNGG	2 cut(s)	294, 469
BssMI	GATC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	294, 469
Bst4CI	ACNGT	2 cut(s)	485, 571
Bst6I	CTCTTC	1 cut(s)	617
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBAI	YACGTR	2 cut(s)	332, 368
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	5 cut(s)	39, 165, 463, 521, 561
BstF5I	GGATG	3 cut(s)	235, 448, 495
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 310, 410
BstSCI	CCNGG	1 cut(s)	503
BstV1I	GCAGC	2 cut(s)	9, 163
BstXI	CCANNNNNNTGG	1 cut(s)	507
BsuRI	GGCC	3 cut(s)	58, 74, 419
BtsCI	GGATG	3 cut(s)	235, 448, 495
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	420, 481, 649
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	418
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	372, 525, 565
CviAII	CATG	1 cut(s)	94
CviQI	GTAC	3 cut(s)	372, 525, 565
DdeI	CTNAG	5 cut(s)	39, 165, 463, 521, 561
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Eco130I	CCWWGG	2 cut(s)	294, 469
Eco57I	CTGAAG	1 cut(s)	329
EcoT14I	CCWWGG	2 cut(s)	294, 469
ErhI	CCWWGG	2 cut(s)	294, 469
FaeI	CATG	1 cut(s)	97
FaiI	YATR	7 cut(s)	49, 95, 132, 269, 378, 477, 681
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	23, 152, 402
FokI	GGATG	3 cut(s)	222, 455, 502
Fsp4HI	GCNGC	3 cut(s)	23, 152, 402
FspBI	CTAG	2 cut(s)	470, 611
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	3 cut(s)	23, 152, 402
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	58, 74, 419
HapII	CCGG	2 cut(s)	239, 505
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	3 cut(s)	43, 251, 341
HpaII	CCGG	2 cut(s)	239, 505
HphI	GGTGA	2 cut(s)	313, 563
Hpy166II	GTNNAC	4 cut(s)	6, 204, 374, 567
Hpy188I	TCNGA	6 cut(s)	16, 40, 288, 309, 602, 675
Hpy188III	TCNNGA	2 cut(s)	560, 589
Hpy8I	GTNNAC	4 cut(s)	6, 204, 374, 567
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	485, 571
HpyCH4IV	ACGT	2 cut(s)	331, 367
HpyCH4V	TGCA	5 cut(s)	151, 235, 317, 413, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 310, 410
HpyF3I	CTNAG	5 cut(s)	39, 165, 463, 521, 561
HpySE526I	ACGT	2 cut(s)	331, 367
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	617
LmnI	GCTCC	2 cut(s)	502, 683
LpnPI	CCDG	9 cut(s)	120, 252, 268, 327, 393, 518, 573, 602, 637
Lsp1109I	GCAGC	2 cut(s)	9, 163
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	470, 611
MaeII	ACGT	2 cut(s)	331, 367
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	284, 347, 634
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	2 cut(s)	109, 184
MlyI	GAGTC	2 cut(s)	37, 260
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	4 cut(s)	97, 101, 169, 681
MseI	TTAA	5 cut(s)	84, 156, 362, 384, 540
MspA1I	CMGCKG	2 cut(s)	258, 693
MspI	CCGG	2 cut(s)	239, 505
MspR9I	CCNGG	1 cut(s)	505
Mva1269I	GAATGC	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	205, 310, 410
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	617
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	24, 153, 403
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	2 cut(s)	37, 259
PpsI	GAGTC	2 cut(s)	37, 259
Ppu21I	YACGTR	2 cut(s)	332, 368
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	418
PvuI	CGATCG	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	3 cut(s)	373, 526, 566
RsaNI	GTAC	3 cut(s)	372, 525, 565
SapI	GCTCTTC	1 cut(s)	617
SaqAI	TTAA	5 cut(s)	84, 156, 362, 384, 540
SatI	GCNGC	3 cut(s)	23, 152, 402
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	418
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	2 cut(s)	37, 260
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	651
SetI	ASST	8 cut(s)	11, 93, 156, 201, 334, 370, 635, 695
SfaNI	GCATC	1 cut(s)	244
Sse9I	AATT	2 cut(s)	109, 184
SsiI	CCGC	3 cut(s)	258, 299, 402
SspMI	CTAG	2 cut(s)	470, 611
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	2 cut(s)	294, 469
TaaI	ACNGT	2 cut(s)	485, 571
TaiI	ACGT	2 cut(s)	334, 370
TasI	AATT	2 cut(s)	109, 184
TatI	WGTACW	2 cut(s)	524, 564
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	5 cut(s)	84, 156, 362, 384, 540
Tru9I	TTAA	5 cut(s)	84, 156, 362, 384, 540
TscAI	CASTG	3 cut(s)	420, 488, 656
TseI	GCWGC	2 cut(s)	22, 151
TspRI	CASTG	3 cut(s)	420, 488, 656
XapI	RAATTY	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	469
XspI	CTAG	2 cut(s)	470, 611
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.