Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001389.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

33719 .. 35138

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001389.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggcgacggccaccgtcgccgaagctgctgtgattctgtacgacatgtttggctggagagtgtcgtcgaagcggagatttctccaagtcgagatcagcgaggaggaggctttctcgaagaccggctcaggcgccggccacgtggatcgagtcaatgtccaccttgtcagatacgctgttatcaaagatacactaactaccacaactggtgcggtggcccctttccaccattcggttttggatgatgctggaataagcaacttagtcttaggatatgctcactgtgggatggttgctgcagcccgttggattgctcagctcagtactccttgcttgcttaaggctattggtgaatatcctgagtatacagtaaaggtgaatgccatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

130

Amino Acids

14.03

Weight (kDa)

6.5

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	365
AciI	CCGC	2 cut(s)	73, 212
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	9, 136
AcvI	CACGTG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	41, 325
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflII	CTTAAG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	45
AluBI	AGCT	2 cut(s)	26, 319
AluI	AGCT	2 cut(s)	26, 319
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	3 cut(s)	9, 136, 216
ApeKI	GCWGC	3 cut(s)	26, 296, 299
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	362, 388
BanI	GGYRCC	1 cut(s)	131
BbrPI	CACGTG	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	13, 283, 311
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	338
BisI	GCNGC	3 cut(s)	27, 297, 300
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	3 cut(s)	28, 298, 301
BmcAI	AGTACT	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	133, 219
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	125
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	2 cut(s)	122, 134
Bse1I	ACTGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	247, 294
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	4 cut(s)	141, 329, 334, 351
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	116, 119
BseXI	GCAGC	3 cut(s)	13, 283, 311
BshFI	GGCC	3 cut(s)	11, 138, 218
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	123, 135
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	11, 138, 218
Bsp143I	GATC	2 cut(s)	93, 145
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	2 cut(s)	73, 212
BspANI	GGCC	3 cut(s)	11, 138, 218
BspCNI	CTCAG	4 cut(s)	140, 328, 333, 352
BspHI	TCATGA	1 cut(s)	389
BspLI	GGNNCC	2 cut(s)	133, 219
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	338
BsrFI	RCCGGY	2 cut(s)	122, 134
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	2 cut(s)	122, 134
BssMI	GATC	2 cut(s)	93, 145
BssNAI	GTATAC	1 cut(s)	366
BssNI	GRCGYC	1 cut(s)	132
Bst1107I	GTATAC	1 cut(s)	366
Bst4CI	ACNGT	3 cut(s)	16, 284, 370
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	338
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	136, 335
BstDEI	CTNAG	6 cut(s)	127, 262, 268, 315, 320, 360
BstF5I	GGATG	2 cut(s)	247, 294
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	96, 148
BstMBI	GATC	2 cut(s)	93, 145
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 26
BstNSI	RCATGY	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	13, 283, 311
BstV2I	GAAGAC	1 cut(s)	125
BstZ17I	GTATAC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	11, 138, 218
BtsCI	GGATG	2 cut(s)	247, 294
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	136, 335
CciI	TCATGA	1 cut(s)	389
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	2 cut(s)	122, 134
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	40, 324
CviAII	CATG	2 cut(s)	46, 390
CviQI	GTAC	2 cut(s)	40, 324
DdeI	CTNAG	6 cut(s)	127, 262, 268, 315, 320, 360
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	95, 147
DpnII	GATC	2 cut(s)	93, 145
EaeI	YGGCCR	2 cut(s)	9, 136
Eco72I	CACGTG	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaeI	CATG	2 cut(s)	49, 393
FaiI	YATR	4 cut(s)	47, 276, 366, 391
FatI	CATG	2 cut(s)	45, 389
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	3 cut(s)	27, 297, 300
FokI	GGATG	2 cut(s)	254, 301
Fsp4HI	GCNGC	3 cut(s)	27, 297, 300
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	3 cut(s)	27, 297, 300
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	11, 138, 218
HapII	CCGG	2 cut(s)	123, 135
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	49, 393
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	34, 150
HpaII	CCGG	2 cut(s)	123, 135
HphI	GGTGA	2 cut(s)	362, 388
Hpy166II	GTNNAC	2 cut(s)	160, 366
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	4 cut(s)	91, 115, 359, 390
Hpy8I	GTNNAC	2 cut(s)	160, 366
Hpy99I	CGWCG	3 cut(s)	10, 20, 70
HpyCH4III	ACNGT	3 cut(s)	16, 284, 370
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 26
HpyF3I	CTNAG	6 cut(s)	127, 262, 268, 315, 320, 360
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	49, 393
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	93, 145
LpnPI	CCDG	7 cut(s)	40, 114, 136, 148, 192, 234, 372
Lsp1109I	GCAGC	3 cut(s)	13, 283, 311
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	1 cut(s)	141
MalI	GATC	2 cut(s)	95, 147
MboI	GATC	2 cut(s)	93, 145
MboII	GAAGA	1 cut(s)	130
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	94, 97, 100
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	1 cut(s)	339
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	2 cut(s)	123, 135
Mva1269I	GAATGC	1 cut(s)	385
MwoI	GCNNNNNNNGC	2 cut(s)	17, 26
NaeI	GCCGGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	93, 145
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	49, 393
NlaIV	GGNNCC	2 cut(s)	133, 219
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	389
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	1 cut(s)	385
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	28, 298, 301
PleI	GAGTC	1 cut(s)	158
PluTI	GGCGCC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	158
Ppu21I	YACGTR	1 cut(s)	142
PscI	ACATGT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	133, 219
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	301
RsaI	GTAC	2 cut(s)	41, 325
RsaNI	GTAC	2 cut(s)	40, 324
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	27, 297, 300
Sau3AI	GATC	2 cut(s)	93, 145
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	325
SchI	GAGTC	1 cut(s)	159
SetI	ASST	5 cut(s)	28, 144, 165, 321, 378
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SsiI	CCGC	2 cut(s)	73, 212
SspDI	GGCGCC	1 cut(s)	131
TaaI	ACNGT	3 cut(s)	16, 284, 370
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	4 cut(s)	68, 90, 116, 148
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	287
TseI	GCWGC	3 cut(s)	26, 296, 299
TspDTI	ATGAA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	287
Vha464I	CTTAAG	1 cut(s)	338
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.