Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002062

Physical Location & Seq

Genomic Coordinates Forward (+)

13820728 .. 13821656

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1115000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCAAATACAGGAAGAAATCATACTGCCGTTACAGTTACCACTACGGAATATAATCGCATGACGACGTTGAAGCAAAGAATCGAAGAAACGAAATGGCTACTGCATCCGTTAGCAGGTAAGAGCTCTTGTTGCATCTTCAAAGTACCTCATTGCCTGGCGAAAACAAACGAGGGGAAGTACCGGCCTCATATCATCTCAATCGGCCCTTATCACTACGGTGATAAACACGTGGTGATGATGCAACAACACAAATGGAGATTTCTTGACAATCTTCTCGGTCGAACGCAGTTGATCGGACTTGATGACTACCGGCAGGTTGTAGCAGAAATCGAAGATGATATAAGAGAGTGCTATGCAGAGACCATTAACTTATGCAGCCGCCATCTGGTTGAGATGATGGTACCAGACGGTCTCTTCATCATCGAAATGTTCTGCAAAGCCTCCTCAAGTCTTGAGGCATTATTTCAGTGTGTCGAAGGAAAGCATCTACTCGATTTACTTCACCTGAGTTTTGTCCCCGAACCTCAGGATGATTCGCCTCAGGAGGACGTTGAGTTTATCCAATCGGCAAAAAAGCTTCACGATCTCGCCGGAATTATGTTCAAAACACGGGAGGCGCAGAGCTTCCTAGACATCAGATTTTGCAATGGAGTTCTTGAAATTCCGCACATAAAACTAGATGATCTCCACACCCATTTCTTCTTAAACTTGGTTGCATTTGAACAACGCTACTCTCATTGCCCAAAGTATATAAACACTTACGCTGCATTCATGAGTTGTCTCGTCCGCACGCCGATGGACGCGACATTTCTGTCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

275

Amino Acids

31.64

Weight (kDa)

6.09

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	46 - 150	4.8e-31	Plant protein of unknown function
DUF247	PF03140	159 - 273	1.3e-27	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44695 AT3G44700 AT3G44700 AT3G44710 AT5G22540 AT5G22550 AT5G22550 AT5G22560
fragaria_vesca	FvH4_1g12920 FvH4_1g13901 FvH4_1g13920
malus_domestica	MD02G1152400.v1.1 MD07G1114700.v1.1 MD07G1115000.v1.1 MD10G1144400.v1.1 MD10G1146500.v1.1
prunus_persica	Prupe.7G149800_v2.0.a1 Prupe.7G150000_v2.0.a1 Prupe.7G150500_v2.0.a1
pyrus_communis	pycom07g10000 pycom10g12420
rosa_chinensis	RchiOBHm_Chr2g0103321 RchiOBHm_Chr7g0226251
rosa_laevigata	RLG00000017223
rosa_multiflora	Rmu_sc0002435.1_g000011 Rmu_sc0006727.1_g000002 Rmu_sc0006743.1_g000002 Rmu_sc0006743.1_g000003 Rmu_sc0010053.1_g000005 Rmu_sc0025224.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139740
rosa_rugosa	Rorug02G0105700 Rorug02G0105800 Rorug02G0105800 Rorug02G0113600 Rorug02G0113800 Rorug07G0236000
rosa_samantha	Rh2BG169200 Rh2CG169100 Rh2DG168000 Rh3BG095300
rosa_wichuraiana	Rw0G019400 Rw2G012010 Rw2G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	814
Acc36I	ACCTGC	2 cut(s)	107, 307
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	403
AccII	CGCG	1 cut(s)	806
AciI	CCGC	3 cut(s)	382, 668, 790
AcsI	RAATTY	1 cut(s)	663
AcvI	CACGTG	1 cut(s)	232
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	3 cut(s)	147, 182, 405
AfiI	CCNNNNNNNGG	2 cut(s)	116, 388
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	73, 142, 607, 662, 725
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	126, 580, 627
AluI	AGCT	3 cut(s)	126, 580, 627
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	3 cut(s)	356, 419, 788
AoxI	GGCC	2 cut(s)	185, 205
ApeKI	GCWGC	2 cut(s)	378, 767
ApoI	RAATTY	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	233, 247, 497
AxyI	CCTNAGG	2 cut(s)	528, 543
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
BbrPI	CACGTG	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	390, 754
BccI	CCATC	3 cut(s)	393, 394, 793
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	3 cut(s)	356, 419, 788
BfaI	CTAG	2 cut(s)	632, 680
BfuAI	ACCTGC	2 cut(s)	107, 307
BisI	GCNGC	3 cut(s)	379, 382, 768
BlsI	GCNGC	3 cut(s)	380, 383, 769
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	4 cut(s)	115, 144, 231, 496
BpuEI	CTTGAG	2 cut(s)	433, 476
BsaAI	YACGTR	1 cut(s)	232
BsaI	GGTCTC	2 cut(s)	356, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 388
Bse118I	RCCGGY	2 cut(s)	183, 312
Bse21I	CCTNAGG	2 cut(s)	528, 543
Bse3DI	GCAATG	3 cut(s)	151, 655, 739
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	106, 538
BseLI	CCNNNNNNNGG	2 cut(s)	116, 388
BseMI	GCAATG	3 cut(s)	151, 655, 739
BseMII	CTCAG	3 cut(s)	500, 542, 557
BseRI	GAGGAG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	390, 754
Bsh1236I	CGCG	1 cut(s)	806
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	2 cut(s)	187, 207
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	184, 313, 594
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	2 cut(s)	116, 388
BsmAI	GTCTC	3 cut(s)	356, 419, 788
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	770
BsnI	GGCC	2 cut(s)	187, 207
Bso31I	GGTCTC	2 cut(s)	356, 419
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	294, 586, 685
BspACI	CCGC	3 cut(s)	382, 668, 790
BspANI	GGCC	2 cut(s)	187, 207
BspCNI	CTCAG	3 cut(s)	501, 541, 556
BspFNI	CGCG	1 cut(s)	806
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	405
BspMI	ACCTGC	2 cut(s)	107, 307
BspT107I	GGYRCC	1 cut(s)	403
BspTNI	GGTCTC	2 cut(s)	356, 419
BsrDI	GCAATG	3 cut(s)	151, 655, 739
BsrFI	RCCGGY	2 cut(s)	183, 312
BssAI	RCCGGY	2 cut(s)	183, 312
BssMI	GATC	3 cut(s)	294, 586, 685
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	37, 221, 413
Bst6I	CTCTTC	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	794
BstDEI	CTNAG	3 cut(s)	509, 528, 543
BstF5I	GGATG	2 cut(s)	106, 538
BstFNI	CGCG	1 cut(s)	806
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	3 cut(s)	297, 589, 688
BstMAI	GTCTC	3 cut(s)	356, 419, 788
BstMBI	GATC	3 cut(s)	294, 586, 685
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	806
BstV1I	GCAGC	2 cut(s)	390, 754
Bsu36I	CCTNAGG	2 cut(s)	528, 543
BsuRI	GGCC	2 cut(s)	187, 207
BtsCI	GGATG	2 cut(s)	106, 538
BtsIMutI	CAGTG	1 cut(s)	476
BveI	ACCTGC	2 cut(s)	107, 307
Cac8I	GCNNGC	1 cut(s)	794
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	622
Cfr10I	RCCGGY	2 cut(s)	183, 312
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	3 cut(s)	146, 181, 404
CviAII	CATG	2 cut(s)	61, 775
CviJI	RGCY	8 cut(s)	100, 126, 187, 207, 381, 443, 580, 627
CviKI_1	RGCY	8 cut(s)	100, 126, 187, 207, 381, 443, 580, 627
CviQI	GTAC	3 cut(s)	146, 181, 404
DdeI	CTNAG	3 cut(s)	509, 528, 543
DpnI	GATC	3 cut(s)	296, 588, 687
DpnII	GATC	3 cut(s)	294, 586, 685
DraIII	CACNNNGTG	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	814
DseDI	GACNNNNNNGTC	1 cut(s)	814
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	128
Eco31I	GGTCTC	2 cut(s)	356, 419
Eco53kI	GAGCTC	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	232
Eco81I	CCTNAGG	2 cut(s)	528, 543
EcoICRI	GAGCTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	128
FaeI	CATG	2 cut(s)	64, 778
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	60, 774
Fnu4HI	GCNGC	3 cut(s)	379, 382, 768
FokI	GGATG	2 cut(s)	93, 545
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	3 cut(s)	379, 382, 768
FspBI	CTAG	2 cut(s)	632, 680
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	3 cut(s)	379, 382, 768
HaeIII	GGCC	2 cut(s)	187, 207
HapII	CCGG	3 cut(s)	184, 313, 594
HgaI	GACGC	1 cut(s)	812
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	2 cut(s)	64, 778
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	81, 536
HpaII	CCGG	3 cut(s)	184, 313, 594
HphI	GGTGA	3 cut(s)	233, 247, 497
Hpy188I	TCNGA	3 cut(s)	299, 641, 820
Hpy188III	TCNNGA	7 cut(s)	266, 455, 530, 545, 584, 659, 775
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	3 cut(s)	37, 221, 413
HpyCH4IV	ACGT	3 cut(s)	68, 231, 552
HpyCH4V	TGCA	9 cut(s)	106, 135, 244, 359, 378, 438, 648, 719, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	509, 528, 543
HpySE526I	ACGT	3 cut(s)	68, 231, 552
Hsp92II	CATG	2 cut(s)	64, 778
HspAI	GCGC	1 cut(s)	620
KpnI	GGTACC	1 cut(s)	407
Kzo9I	GATC	3 cut(s)	294, 586, 685
Lsp1109I	GCAGC	2 cut(s)	390, 754
LweI	GCATC	4 cut(s)	115, 144, 231, 496
MaeI	CTAG	2 cut(s)	632, 680
MaeII	ACGT	3 cut(s)	68, 231, 552
MaeIII	GTNAC	2 cut(s)	31, 37
MalI	GATC	3 cut(s)	296, 588, 687
MboI	GATC	3 cut(s)	294, 586, 685
MboII	GAAGA	7 cut(s)	27, 98, 130, 266, 347, 409, 694
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	2 cut(s)	597, 663
MseI	TTAA	3 cut(s)	369, 707, 823
MslI	CAYNNNNRTG	3 cut(s)	219, 428, 797
MspI	CCGG	3 cut(s)	184, 313, 594
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	806
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	3 cut(s)	294, 586, 685
NlaIII	CATG	2 cut(s)	64, 778
NlaIV	GGNNCC	1 cut(s)	405
OliI	CACNNNNGTG	1 cut(s)	219
PagI	TCATGA	1 cut(s)	774
PctI	GAATGC	1 cut(s)	770
PfeI	GAWTC	2 cut(s)	81, 536
PkrI	GCNGC	3 cut(s)	380, 383, 769
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
Ppu21I	YACGTR	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	156
PspCI	CACGTG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	3 cut(s)	147, 182, 405
RsaNI	GTAC	3 cut(s)	146, 181, 404
RseI	CAYNNNNRTG	3 cut(s)	219, 428, 797
SacI	GAGCTC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	369, 707, 823
SatI	GCNGC	3 cut(s)	379, 382, 768
Sau3AI	GATC	3 cut(s)	294, 586, 685
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	128
SfaNI	GCATC	4 cut(s)	115, 144, 231, 496
SmiMI	CAYNNNNRTG	3 cut(s)	219, 428, 797
SmlI	CTYRAG	2 cut(s)	448, 455
SmoI	CTYRAG	2 cut(s)	448, 455
Sse9I	AATT	2 cut(s)	597, 663
SsiI	CCGC	3 cut(s)	382, 668, 790
SspMI	CTAG	2 cut(s)	632, 680
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	37, 221, 413
TaiI	ACGT	3 cut(s)	71, 234, 555
TaqI	TCGA	6 cut(s)	84, 283, 333, 426, 477, 495
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	2 cut(s)	597, 663
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	81, 536
Tru1I	TTAA	3 cut(s)	369, 707, 823
Tru9I	TTAA	3 cut(s)	369, 707, 823
TscAI	CASTG	1 cut(s)	476
TseI	GCWGC	2 cut(s)	378, 767
TspDTI	ATGAA	2 cut(s)	409, 763
TspGWI	ACGGA	2 cut(s)	62, 99
TspRI	CASTG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	663
XspI	CTAG	2 cut(s)	632, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.