Rroxscaffold_2G00139740

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002062
Physical Location & Seq
Reverse (-)
78095536 .. 78096891
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139740.1

Sequence Viewer

Length: 1356 bp
ATGGCTTCGTCCTCGAGCTCACCAATGTCGGTGAACGGAGATGGAAACTATTCTGTCATTACAGTTGCATCGCTGGAGGAAACAGTCAACGGAACAGAATGGCTCCTGGACCCCTCAGCTGGAAATGAGTCTTTTTGCATCTTCCGAGTACCCAAATGCCTAGTTGACGTAAACAAGAACACCTACGGGCCTCATATAGTATCCATCGGTCCTTATCACCATGGTGAAAAACATTTGGAGATGATGCAGCAGCATAAGAGGAGATTTCTTCGCAATCTTCTTACTCAAACACCACCAACTGGCCCGGGACTAGACGACTACCAGCAGGCTGTAGCATTAAGGGAAGAAGAGATAAGAGGGTGCTATTCAGAGTCGACGCTCAAGTTTTGCAGGGATCAGCTCGTTGACATGATGGTGTTGGATGGTCTCTTCATTGTTGAACTCCTGTGCAAAATTGGAGGATTATCAAAAACGCCAATTGGAGATGACCCCATCTTTCACTTTGCATCGGTCTTTACTTATCTCATCCGAGATCTTCTTCGGTTGGAGAACCAGATTCCTTTCTTTGTTCTTCAAACATTATTCAACGCATCAAGAGATTCAAGACATGCCAGTGACTCATCCCTTGCCGAACTGGCTCTACAATTATTCGAATCTGCAGTAGAAATACCTTACGGAGATCATGATCAAGGAAAACATTTACTTGATTTACTTCGTTTGAGTTTTATCCACCCAAGCATGAGGCTCAAAGAAATCAACCTTGGATTTACCTCTTCATCTGTTCAGATCATCCAATCAGCAAAAAAGCTTCATCTAGCTGGAATAAAGTTCAAGGCAAGGCATGCGCAGAATGAGGCAATGAGCTTCCTAGATATCAGATTCTCAAATGGAGTGCTTGAAATCCCACTTATAACACTGGATGATCTTTTTACTGATCTATTACTGAACTTCGTTGCATTTGAACAATGCTACTCTCATTCTCCAAGGCACATAACCACTTACGCTGCATTCATGAGTTGCCTAGTTCGTTCGCCTACGGACGCAACATTTCTCTGCGAACATGATATTATTGAAAAATATATTGCCACCGATGAGGAAGTTGCAAATTTTTTCAGAAACATGGGGAAGGATGTGCCTTTCGATATTGGCCAGAGTTATCTACTGGAGTTGTTCAAGGATGTAAATGAGTACCAGAGGAATATGTGGCATGTCCGATGGGCGGGTTTCAGGTTGAAGTATTTTGATACTCCATGGTCTTTCTTGTCTGCTTTAGCTGCTGTCATACTCTTACTCTTCACTGCAATTCAGACCTTCTTTGCTGTTTATGCATATGTGCTTCCACCAAAAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

451

Amino Acids

51.25

Weight (kDa)

5.52

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 47 - 432 1.6e-113 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 911
Acc16I TGCGCA 1 cut(s) 846
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 374
AciI CCGC 1 cut(s) 1220
AclWI GGATC 1 cut(s) 402
AcoI YGGCCR 1 cut(s) 1147
AcsI RAATTY 1 cut(s) 1105
AfaI GTAC 2 cut(s) 150, 1190
AfiI CCNNNNNNNGG 3 cut(s) 119, 299, 1219
AjnI CCWGG 1 cut(s) 105
AjuI GAANNNNNNNTTGG 2 cut(s) 744, 776
AleI CACNNNNGTG 1 cut(s) 222
AluBI AGCT 7 cut(s) 18, 119, 400, 808, 818, 864, 1274
AluI AGCT 7 cut(s) 18, 119, 400, 808, 818, 864, 1274
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 2 cut(s) 13, 304
AoxI GGCC 3 cut(s) 188, 301, 1147
ApeKI GCWGC 4 cut(s) 247, 250, 1004, 1274
ApoI RAATTY 1 cut(s) 1105
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 847
AspS9I GGNCC 4 cut(s) 109, 188, 209, 302
AsuC2I CCSGG 2 cut(s) 305, 306
AsuHPI GGTGA 4 cut(s) 12, 43, 209, 236
AsuII TTCGAA 1 cut(s) 651
AvaI CYCGRG 2 cut(s) 13, 304
AvaII GGWCC 2 cut(s) 109, 209
BalI TGGCCA 1 cut(s) 1149
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 115
BbvI GCAGC 4 cut(s) 259, 262, 991, 1261
BccI CCATC 6 cut(s) 35, 212, 406, 416, 500, 1209
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 211
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 2 cut(s) 305, 306
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 5 cut(s) 161, 311, 815, 869, 1022
BfmI CTRYAG 2 cut(s) 330, 657
BfuI GTATCC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 635
BglII AGATCT 1 cut(s) 532
BisI GCNGC 4 cut(s) 248, 251, 1005, 1275
BlsI GCNGC 4 cut(s) 249, 252, 1006, 1276
Bme1390I CCNGG 3 cut(s) 107, 305, 306
Bme18I GGWCC 2 cut(s) 109, 209
BmeT110I CYCGRG 2 cut(s) 13, 304
BmgT120I GGNCC 4 cut(s) 109, 188, 209, 302
BmiI GGNNCC 2 cut(s) 104, 111
BmrFI CCNGG 3 cut(s) 107, 305, 306
BmsI GCATC 5 cut(s) 77, 147, 234, 515, 599
BpmI CTGGAG 2 cut(s) 95, 1184
Bpu10I CCTNAGC 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 2 cut(s) 305, 306
BsaBI GATNNNNATC 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 5 cut(s) 220, 304, 760, 983, 1250
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 299, 1219
Bse1I ACTGG 5 cut(s) 304, 612, 639, 921, 1167
Bse3DI GCAATG 1 cut(s) 864
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 5 cut(s) 220, 304, 760, 983, 1250
BseGI GGATG 7 cut(s) 427, 525, 620, 789, 925, 1135, 1183
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 3 cut(s) 119, 299, 1219
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 5 cut(s) 304, 612, 639, 921, 1167
BseRI GAGGAG 1 cut(s) 274
BseXI GCAGC 4 cut(s) 259, 262, 991, 1261
BshFI GGCC 3 cut(s) 190, 303, 1149
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 2 cut(s) 13, 304
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 3 cut(s) 119, 299, 1219
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 1007
BsnI GGCC 3 cut(s) 190, 303, 1149
Bso31I GGTCTC 1 cut(s) 431
BsoBI CYCGRG 2 cut(s) 13, 304
Bsp119I TTCGAA 1 cut(s) 651
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 7 cut(s) 394, 532, 679, 685, 786, 922, 934
Bsp19I CCATGG 2 cut(s) 220, 1250
BspACI CCGC 1 cut(s) 1220
BspANI GGCC 3 cut(s) 190, 303, 1149
BspCNI CTCAG 1 cut(s) 128
BspHI TCATGA 2 cut(s) 682, 1011
BspLI GGNNCC 2 cut(s) 104, 111
BspMAI CTGCAG 1 cut(s) 661
BspPI GGATC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 651
BspTNI GGTCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 864
BsrI ACTGG 5 cut(s) 304, 612, 639, 921, 1167
BssECI CCNNGG 5 cut(s) 220, 304, 760, 983, 1250
BssMI GATC 7 cut(s) 394, 532, 679, 685, 786, 922, 934
BssT1I CCWWGG 4 cut(s) 220, 760, 983, 1250
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 64, 85
Bst6I CTCTTC 4 cut(s) 342, 434, 778, 1298
BstAPI GCANNNNNTGC 1 cut(s) 842
BstBI TTCGAA 1 cut(s) 651
BstC8I GCNNGC 2 cut(s) 327, 843
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 2 cut(s) 220, 1250
BstF5I GGATG 7 cut(s) 427, 525, 620, 789, 925, 1135, 1183
BstHHI GCGC 1 cut(s) 847
BstKTI GATC 7 cut(s) 397, 535, 682, 688, 789, 925, 937
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 7 cut(s) 394, 532, 679, 685, 786, 922, 934
BstMWI GCNNNNNNNGC 4 cut(s) 635, 842, 1274, 1325
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 3 cut(s) 611, 845, 1211
BstSCI CCNGG 3 cut(s) 105, 303, 304
BstSFI CTRYAG 2 cut(s) 330, 657
BstV1I GCAGC 4 cut(s) 259, 262, 991, 1261
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 3 cut(s) 190, 303, 1149
BtgI CCRYGG 2 cut(s) 220, 1250
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 7 cut(s) 427, 525, 620, 789, 925, 1135, 1183
BtsI GCAGTG 1 cut(s) 1296
BtsIMutI CAGTG 3 cut(s) 619, 914, 1296
Cac8I GCNNGC 2 cut(s) 327, 843
CciI TCATGA 2 cut(s) 682, 1011
CfoI GCGC 1 cut(s) 847
Cfr13I GGNCC 4 cut(s) 109, 188, 209, 302
Cfr9I CCCGGG 1 cut(s) 304
CseI GACGC 2 cut(s) 385, 1049
Csp6I GTAC 2 cut(s) 149, 1189
CviQI GTAC 2 cut(s) 149, 1189
DdeI CTNAG 1 cut(s) 115
DpnI GATC 7 cut(s) 396, 534, 681, 687, 788, 924, 936
DpnII GATC 7 cut(s) 394, 532, 679, 685, 786, 922, 934
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 4 cut(s) 342, 434, 778, 1298
EarI CTCTTC 4 cut(s) 342, 434, 778, 1298
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 4 cut(s) 220, 760, 983, 1250
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 431
Eco32I GATATC 1 cut(s) 874
Eco47I GGWCC 2 cut(s) 109, 209
Eco53kI GAGCTC 1 cut(s) 18
Eco88I CYCGRG 2 cut(s) 13, 304
EcoICRI GAGCTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 105
EcoRV GATATC 1 cut(s) 874
EcoT14I CCWWGG 4 cut(s) 220, 760, 983, 1250
EcoT22I ATGCAT 1 cut(s) 1330
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 4 cut(s) 220, 760, 983, 1250
FaqI GGGAC 1 cut(s) 321
FauI CCCGC 1 cut(s) 1213
FauNDI CATATG 1 cut(s) 1330
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 4 cut(s) 248, 251, 1005, 1275
FokI GGATG 7 cut(s) 434, 512, 607, 776, 932, 1142, 1190
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 248, 251, 1005, 1275
FspBI CTAG 5 cut(s) 161, 311, 815, 869, 1022
FspI TGCGCA 1 cut(s) 846
GlaI GCGC 1 cut(s) 846
GluI GCNGC 4 cut(s) 248, 251, 1005, 1275
GsuI CTGGAG 2 cut(s) 95, 1184
HaeIII GGCC 3 cut(s) 190, 303, 1149
HapII CCGG 1 cut(s) 305
HgaI GACGC 2 cut(s) 385, 1049
HhaI GCGC 1 cut(s) 847
Hin6I GCGC 1 cut(s) 845
HinP1I GCGC 1 cut(s) 845
HincII GTYRAC 4 cut(s) 88, 166, 375, 406
HindII GTYRAC 4 cut(s) 88, 166, 375, 406
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 7 cut(s) 128, 371, 556, 599, 617, 653, 879
HpaII CCGG 1 cut(s) 305
HphI GGTGA 4 cut(s) 12, 43, 209, 236
Hpy166II GTNNAC 6 cut(s) 34, 88, 166, 172, 375, 406
Hpy188I TCNGA 8 cut(s) 146, 370, 530, 786, 878, 1115, 1214, 1308
Hpy188III TCNNGA 4 cut(s) 594, 603, 683, 1012
Hpy8I GTNNAC 6 cut(s) 34, 88, 166, 172, 375, 406
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 1120, 1321
HpyCH4III ACNGT 2 cut(s) 64, 85
HpyCH4IV ACGT 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 4 cut(s) 635, 842, 1274, 1325
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 168
HspAI GCGC 1 cut(s) 845
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 7 cut(s) 394, 532, 679, 685, 786, 922, 934
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 4 cut(s) 259, 262, 991, 1261
LweI GCATC 5 cut(s) 77, 147, 234, 515, 599
MaeI CTAG 5 cut(s) 161, 311, 815, 869, 1022
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 614
MalI GATC 7 cut(s) 396, 534, 681, 687, 788, 924, 936
MboI GATC 7 cut(s) 394, 532, 679, 685, 786, 922, 934
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 1149
MluCI AATT 5 cut(s) 453, 477, 644, 1105, 1302
MluNI TGGCCA 1 cut(s) 1149
MlyI GAGTC 3 cut(s) 137, 380, 611
MmeI TCCRAC 2 cut(s) 399, 525
Mox20I TGGCCA 1 cut(s) 1149
Mph1103I ATGCAT 1 cut(s) 1330
MroXI GAANNNNTTC 1 cut(s) 49
MscI TGGCCA 1 cut(s) 1149
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 3 cut(s) 222, 413, 612
Msp20I TGGCCA 1 cut(s) 1149
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 3 cut(s) 107, 305, 306
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 1007
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 4 cut(s) 635, 842, 1274, 1325
NciI CCSGG 2 cut(s) 305, 306
NcoI CCATGG 2 cut(s) 220, 1250
NdeI CATATG 1 cut(s) 1330
NdeII GATC 7 cut(s) 394, 532, 679, 685, 786, 922, 934
NlaIV GGNNCC 2 cut(s) 104, 111
NmuCI GTSAC 1 cut(s) 614
NsbI TGCGCA 1 cut(s) 846
NsiI ATGCAT 1 cut(s) 1330
NspI RCATGY 3 cut(s) 611, 845, 1211
NspV TTCGAA 1 cut(s) 651
OliI CACNNNNGTG 1 cut(s) 222
PaeI GCATGC 1 cut(s) 845
PaeR7I CTCGAG 1 cut(s) 13
PagI TCATGA 2 cut(s) 682, 1011
PctI GAATGC 1 cut(s) 1007
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 4 cut(s) 556, 599, 653, 879
PflMI CCANNNNNTGG 1 cut(s) 299
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 4 cut(s) 249, 252, 1006, 1276
PleI GAGTC 3 cut(s) 136, 379, 611
PpsI GAGTC 3 cut(s) 136, 379, 611
PsiI TTATAA 1 cut(s) 911
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 104, 111
PspPI GGNCC 4 cut(s) 109, 188, 209, 302
PspXI VCTCGAGB 1 cut(s) 13
PsrI GAACNNNNNNTAC 2 cut(s) 624, 656
PstI CTGCAG 1 cut(s) 661
PsuI RGATCY 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 150, 1190
RsaNI GTAC 2 cut(s) 149, 1189
RseI CAYNNNNRTG 3 cut(s) 222, 413, 612
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 4 cut(s) 248, 251, 1005, 1275
Sau3AI GATC 7 cut(s) 394, 532, 679, 685, 786, 922, 934
Sau96I GGNCC 4 cut(s) 109, 188, 209, 302
SchI GAGTC 3 cut(s) 137, 380, 611
ScrFI CCNGG 3 cut(s) 107, 305, 306
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 5 cut(s) 77, 147, 234, 515, 599
SfcI CTRYAG 2 cut(s) 330, 657
Sfr274I CTCGAG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 651
SinI GGWCC 2 cut(s) 109, 209
SlaI CTCGAG 1 cut(s) 13
SmaI CCCGGG 1 cut(s) 306
SmiMI CAYNNNNRTG 3 cut(s) 222, 413, 612
SmlI CTYRAG 2 cut(s) 13, 380
SmoI CTYRAG 2 cut(s) 13, 380
SphI GCATGC 1 cut(s) 845
Sse9I AATT 5 cut(s) 453, 477, 644, 1105, 1302
SsiI CCGC 1 cut(s) 1220
SspMI CTAG 5 cut(s) 161, 311, 815, 869, 1022
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 105, 303, 304
StyI CCWWGG 4 cut(s) 220, 760, 983, 1250
TaaI ACNGT 2 cut(s) 64, 85
TaiI ACGT 1 cut(s) 171
TaqI TCGA 4 cut(s) 14, 374, 651, 1140
TaqII GACCGA 2 cut(s) 197, 499
TasI AATT 5 cut(s) 453, 477, 644, 1105, 1302
TfiI GAWTC 4 cut(s) 556, 599, 653, 879
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 3 cut(s) 619, 921, 1303
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 4 cut(s) 247, 250, 1004, 1274
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 4 cut(s) 421, 765, 800, 1000
TspGWI ACGGA 4 cut(s) 51, 105, 690, 1052
TspMI CCCGGG 1 cut(s) 304
TspRI CASTG 3 cut(s) 619, 921, 1303
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 109, 209
XapI RAATTY 1 cut(s) 1105
XceI RCATGY 3 cut(s) 611, 845, 1211
XhoI CTCGAG 1 cut(s) 13
XmaI CCCGGG 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 5 cut(s) 161, 311, 815, 869, 1022
Zsp2I ATGCAT 1 cut(s) 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.