RchiOBHm_Chr7g0226251

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002062
Physical Location & Seq
Forward (+)
49399069 .. 49399344
276 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20265

Sequence Viewer

Length: 276 bp
ATGGAGCAAACTCAACAAAGAATCAGGGAAACGAGATGGCTATTGCGCCTGTCACTCGAAAGCGAGTGTTGTTGCATCTTCAGAGTATCCCAACGCCTACTGGATACAAGCAAGATGTTCAACGCGCCTCGTATAGTCTCCATTAATGGTCCATATCACAATGGTGAAAAACATTTGAAGATGATGGAGCAGCACAAATGGAGATTTCTTCACGATCTCTTCACTCGAGCACCATCAACCAGCTGGAGACTTGATGACTACCTAGCTTGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

91

Amino Acids

11.07

Weight (kDa)

9.3

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 26 - 88 7.7e-12 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 121, 178
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 2 cut(s) 243, 266
AluI AGCT 2 cut(s) 243, 266
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 142, 241
Ama87I CYCGRG 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 190
AseI ATTAAT 1 cut(s) 144
AspLEI GCGC 2 cut(s) 48, 127
AspS9I GGNCC 2 cut(s) 149, 270
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 2 cut(s) 149, 270
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 202
BccI CCATC 3 cut(s) 30, 178, 241
BciVI GTATCC 2 cut(s) 97, 97
BcoDI GTCTC 2 cut(s) 142, 241
BfaI CTAG 1 cut(s) 263
BfuI GTATCC 2 cut(s) 97, 97
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme18I GGWCC 2 cut(s) 149, 270
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 149, 270
BmsI GCATC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 142, 241
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 1 cut(s) 214
BspFNI CGCG 1 cut(s) 125
BsrI ACTGG 1 cut(s) 105
BssMI GATC 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 224
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 2 cut(s) 48, 127
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 2 cut(s) 142, 241
BstMBI GATC 1 cut(s) 214
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 202
BsuI GTATCC 2 cut(s) 97, 97
CfoI GCGC 2 cut(s) 48, 127
Cfr13I GGNCC 2 cut(s) 149, 270
CviJI RGCY 3 cut(s) 40, 243, 266
CviKI_1 RGCY 3 cut(s) 40, 243, 266
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 149, 270
Eco57I CTGAAG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 225
FaiI YATR 2 cut(s) 134, 154
Fnu4HI GCNGC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 1 cut(s) 263
GlaI GCGC 2 cut(s) 47, 126
GluI GCNGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 265
HhaI GCGC 2 cut(s) 48, 127
Hin6I GCGC 2 cut(s) 46, 125
HinP1I GCGC 2 cut(s) 46, 125
HinfI GANTC 1 cut(s) 21
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 75
HspAI GCGC 2 cut(s) 46, 125
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 2 cut(s) 4, 187
LpnPI CCDG 5 cut(s) 10, 62, 86, 229, 253
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 51
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 4 cut(s) 70, 190, 200, 211
MhlI GDGCHC 1 cut(s) 232
MnlI CCTC 1 cut(s) 138
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 243
MvnI CGCG 1 cut(s) 125
NdeII GATC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 51
OliI CACNNNNGTG 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 225
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 192
PshBI ATTAAT 1 cut(s) 144
PspPI GGNCC 2 cut(s) 149, 270
PspXI VCTCGAGB 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 2 cut(s) 149, 270
SduI GDGCHC 1 cut(s) 232
SetI ASST 3 cut(s) 245, 264, 268
SfaNI GCATC 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 225
SinI GGWCC 2 cut(s) 149, 270
SlaI CTCGAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
SspMI CTAG 1 cut(s) 263
TaqI TCGA 2 cut(s) 57, 226
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 149, 270
VspI ATTAAT 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XhoI CTCGAG 1 cut(s) 225
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.