AT3G59070

Cytochrome b561 and DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002816
Physical Location & Seq
Reverse (-)
21832364 .. 21834514
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59070.1

Sequence Viewer

Length: 1401 bp
ATGTCCTTGTCTTCGAGAGCCACGTTAGTCGTTTTGTGTTGTCTGTTCATGTTGATTCCATCTTTTACGACAGCAGCAACAGAACAAGGACTTCATGCTAGATCTAGATGTGAATCTTACAGCTTCAACAACGGAAAAAGCTTTCGCTCTTGCACGGATCTTTTGGTGTTAAACTCTTATCTACACTTTAATTATGCTCAAGAAACCGGAGTTCTTGAAATTGCATACCATCACTCCAATCTTGAGTCTTCTAGTTGGATATCGTGGGCTATAAACCCGACAAGCAAAGGCATGGTGGGAGCTCAAGCACTCGTGGCTTATCGAAACTCAACTTCTGGTGTCATGCGTGCTTATACTTCCTCCATTAATAGCTACTCTCCTATGCTTCAAGAGTCTCCTCTTAGCCTTCGTGTAACACAAGTATCCGCTGAGTATTCTAATGGAGAGATGATGATATTTGCAACTTTAGTCTTGCCTCCTAACACAACCGTCGTTAATCACTTATGGCAAGACGGTCCGTTGAAGGAAGGAGATAGACTTGGAATGCACGCAATGAGTGGTGATAATCTCAAATCCATGGCTTCTTTGGATTTGCTTTCCGGACAAGTCACAACCACAAAATCAGTTAACAGAAACATGTTGTTGGTAAAACAAATCCATGCAATAGTGAATGCATTGAGCTGGGGGATTCTCATGCCCATCGGAGTTATGGCTGCAAGATATATGAAGAATTACGAGGTATTAGATCCCACATGGTTCTATATACACGTTGTTTGTCAAACCACGGGTTATTTTTCCGGTTTGATCGGAGGATTAGGAACAGCAATCTACATGGCGAGACATACCGGGATGAGGACTACACTGCATACCGTGATAGGATTACTTCTGTTTGCTTTAGGGTTTTTGCAGATACTTTCGCTCAAAGCAAGACCGAACAAGGATCATAAATACAGAAAATACTGGAACTGGTATCATCATACTATGGGATACATAGTGATTGTACTAAGCATATACAATATCTACAAAGGCTTGTCTATTTTACAACCCGGAAGCATCTGGAAAATCGCCTATACTACCATAATCTGTTGCATTGCAGCGTTTGCGGTTGTGATGGAAATTTTACAGTTTAAGAAGAGATGGGCTAGATTGTTCTTCAAGAAATCCAAAGACGTAGAAGCTGATCAACCCACTGTTTCCGTTGATGTGATCGGAGAGACGGAAAAGGCGGAGAGGAAAAAGGCGAGCGGCGGAATTGAAATTCAGATTGAAAACTATAATATAACGAAGAACTTCATGATCCCCTCAGTTTTTGTTATTTCTTATCCACATACTTCTCCGCCGCTTCTAGCCTTTCATTCCTACCACCATCCGTCTACTTCCATCGCCGCCACCGCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

466

Amino Acids

52.01

Weight (kDa)

9.23

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 98 - 198 3.5e-28 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1245
AccI GTMKAC 1 cut(s) 1373
AccIII TCCGGA 1 cut(s) 599
AclWI GGATC 4 cut(s) 165, 740, 948, 1291
AcsI RAATTY 2 cut(s) 1116, 1257
AfaI GTAC 1 cut(s) 1002
AfiI CCNNNNNNNGG 1 cut(s) 852
AflIII ACRYGT 2 cut(s) 636, 766
AgsI TTSAA 7 cut(s) 127, 218, 389, 523, 1156, 1256, 1268
AluBI AGCT 6 cut(s) 123, 141, 302, 372, 681, 1178
AluI AGCT 6 cut(s) 123, 141, 302, 372, 681, 1178
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 399, 832, 1208
AlwI GGATC 4 cut(s) 165, 740, 948, 1291
Aor13HI TCCGGA 1 cut(s) 599
ApeKI GCWGC 3 cut(s) 74, 713, 1094
ApoI RAATTY 2 cut(s) 1116, 1257
AseI ATTAAT 1 cut(s) 366
Asp700I GAANNNNTTC 1 cut(s) 1289
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 847, 1047
AsuHPI GGTGA 1 cut(s) 572
AvaII GGWCC 1 cut(s) 515
BaeI ACNNNNGTAYC 2 cut(s) 405, 438
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 311
BbsI GAAGAC 2 cut(s) 3, 240
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 86, 700, 1106
BccI CCATC 7 cut(s) 67, 237, 707, 1105, 1131, 1374, 1388
BciVI GTATCC 2 cut(s) 433, 980
BclI TGATCA 1 cut(s) 1180
BcnI CCSGG 2 cut(s) 847, 1047
BcoDI GTCTC 3 cut(s) 399, 832, 1208
BfaI CTAG 5 cut(s) 99, 105, 252, 1143, 1346
BfuI GTATCC 2 cut(s) 433, 980
BglII AGATCT 1 cut(s) 101
BisI GCNGC 7 cut(s) 75, 714, 1095, 1246, 1340, 1386, 1395
BlsI GCNGC 7 cut(s) 76, 715, 1096, 1247, 1341, 1387, 1396
Bme1390I CCNGG 2 cut(s) 847, 1047
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 515
BmrFI CCNGG 2 cut(s) 847, 1047
BmsI GCATC 1 cut(s) 1062
BpiI GAAGAC 2 cut(s) 3, 240
BpuEI CTTGAG 3 cut(s) 183, 263, 288
BpuMI CCSGG 2 cut(s) 847, 1047
BsaBI GATNNNNATC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 576, 783
BsaWI WCCGGW 3 cut(s) 206, 599, 797
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 852
Bse1I ACTGG 2 cut(s) 965, 971
Bse3DI GCAATG 2 cut(s) 558, 1089
Bse8I GATNNNNATC 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 576, 783
BseGI GGATG 2 cut(s) 855, 1366
BseJI GATNNNNATC 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 852
BseMI GCAATG 2 cut(s) 558, 1089
BseMII CTCAG 2 cut(s) 420, 1317
BseNI ACTGG 2 cut(s) 965, 971
BseRI GAGGAG 1 cut(s) 387
BseXI GCAGC 3 cut(s) 86, 700, 1106
BseYI CCCAGC 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 5 cut(s) 207, 600, 798, 846, 1047
BslI CCNNNNNNNGG 1 cut(s) 852
BsmAI GTCTC 3 cut(s) 399, 832, 1208
BsmBI CGTCTC 1 cut(s) 1208
BsmI GAATGC 2 cut(s) 549, 676
Bsp1286I GDGCHC 1 cut(s) 304
Bsp13I TCCGGA 1 cut(s) 599
Bsp143I GATC 8 cut(s) 101, 157, 745, 804, 940, 1180, 1206, 1296
Bsp19I CCATGG 1 cut(s) 576
BspCNI CTCAG 2 cut(s) 421, 1316
BspEI TCCGGA 1 cut(s) 599
BspHI TCATGA 1 cut(s) 1293
BspPI GGATC 4 cut(s) 165, 740, 948, 1291
BsrBI CCGCTC 1 cut(s) 1245
BsrDI GCAATG 2 cut(s) 558, 1089
BsrI ACTGG 2 cut(s) 965, 971
BssECI CCNNGG 2 cut(s) 576, 783
BssMI GATC 8 cut(s) 101, 157, 745, 804, 940, 1180, 1206, 1296
BssSI CACGAG 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 311
Bst4CI ACNGT 5 cut(s) 490, 515, 871, 1125, 1192
Bst6I CTCTTC 1 cut(s) 1127
BstAPI GCANNNNNTGC 1 cut(s) 1100
BstC8I GCNNGC 3 cut(s) 348, 549, 1243
BstDEI CTNAG 4 cut(s) 401, 429, 1004, 1303
BstDSI CCRYGG 2 cut(s) 576, 783
BstF5I GGATG 2 cut(s) 855, 1366
BstKTI GATC 8 cut(s) 104, 160, 748, 807, 943, 1183, 1209, 1299
BstMAI GTCTC 3 cut(s) 399, 832, 1208
BstMBI GATC 8 cut(s) 101, 157, 745, 804, 940, 1180, 1206, 1296
BstMWI GCNNNNNNNGC 4 cut(s) 314, 1100, 1391, 1394
BstNSI RCATGY 1 cut(s) 640
BstSCI CCNGG 2 cut(s) 845, 1045
BstV1I GCAGC 3 cut(s) 86, 700, 1106
BstV2I GAAGAC 2 cut(s) 3, 240
BstX2I RGATCY 3 cut(s) 101, 157, 745
BstYI RGATCY 3 cut(s) 101, 157, 745
BsuI GTATCC 2 cut(s) 433, 980
BtgI CCRYGG 2 cut(s) 576, 783
BtgZI GCGATG 1 cut(s) 1366
BtsCI GGATG 2 cut(s) 855, 1366
BtsI GCAGTG 1 cut(s) 860
BtsIMutI CAGTG 2 cut(s) 860, 1188
Cac8I GCNNGC 3 cut(s) 348, 549, 1243
CciI TCATGA 1 cut(s) 1293
Cfr13I GGNCC 1 cut(s) 515
CpoI CGGWCCG 1 cut(s) 515
Csp6I GTAC 1 cut(s) 1001
CspI CGGWCCG 1 cut(s) 515
CviQI GTAC 1 cut(s) 1001
DdeI CTNAG 4 cut(s) 401, 429, 1004, 1303
DpnI GATC 8 cut(s) 103, 159, 747, 806, 942, 1182, 1208, 1298
DpnII GATC 8 cut(s) 101, 157, 745, 804, 940, 1180, 1206, 1296
Eam1104I CTCTTC 1 cut(s) 1127
EarI CTCTTC 1 cut(s) 1127
EciI GGCGGA 3 cut(s) 1241, 1263, 1326
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 515
Eco53kI GAGCTC 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 302
EcoRV GATATC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 1208
FbaI TGATCA 1 cut(s) 1180
FblI GTMKAC 1 cut(s) 1373
Fnu4HI GCNGC 7 cut(s) 75, 714, 1095, 1246, 1340, 1386, 1395
FokI GGATG 2 cut(s) 862, 1353
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 7 cut(s) 75, 714, 1095, 1246, 1340, 1386, 1395
FspBI CTAG 5 cut(s) 99, 105, 252, 1143, 1346
GluI GCNGC 7 cut(s) 75, 714, 1095, 1246, 1340, 1386, 1395
GsaI CCCAGC 1 cut(s) 685
HapII CCGG 5 cut(s) 207, 600, 798, 846, 1047
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 5 cut(s) 55, 113, 245, 392, 688
HpaI GTTAAC 1 cut(s) 628
HpaII CCGG 5 cut(s) 207, 600, 798, 846, 1047
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 2 cut(s) 628, 1374
Hpy188I TCNGA 4 cut(s) 704, 809, 1211, 1263
Hpy8I GTNNAC 2 cut(s) 628, 1374
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 3 cut(s) 416, 517, 521
HpyCH4III ACNGT 5 cut(s) 490, 515, 871, 1125, 1192
HpyCH4IV ACGT 3 cut(s) 23, 768, 1170
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 1100, 1391, 1394
HpyF3I CTNAG 4 cut(s) 401, 429, 1004, 1303
HpySE526I ACGT 3 cut(s) 23, 768, 1170
Kpn2I TCCGGA 1 cut(s) 599
Ksp22I TGATCA 1 cut(s) 1180
KspAI GTTAAC 1 cut(s) 628
Kzo9I GATC 8 cut(s) 101, 157, 745, 804, 940, 1180, 1206, 1296
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 3 cut(s) 86, 700, 1106
LweI GCATC 1 cut(s) 1062
MaeI CTAG 5 cut(s) 99, 105, 252, 1143, 1346
MaeII ACGT 3 cut(s) 23, 768, 1170
MaeIII GTNAC 2 cut(s) 412, 607
MalI GATC 8 cut(s) 103, 159, 747, 806, 942, 1182, 1208, 1298
MbiI CCGCTC 1 cut(s) 1245
MboI GATC 8 cut(s) 101, 157, 745, 804, 940, 1180, 1206, 1296
MboII GAAGA 6 cut(s) 3, 240, 739, 1144, 1144, 1297
MflI RGATCY 3 cut(s) 101, 157, 745
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 6 cut(s) 190, 219, 730, 1116, 1251, 1257
MlyI GAGTC 2 cut(s) 254, 401
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 8 cut(s) 370, 408, 486, 730, 803, 846, 1224, 1312
Mph1103I ATGCAT 1 cut(s) 676
MroI TCCGGA 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 1289
MseI TTAA 6 cut(s) 170, 189, 366, 495, 627, 1128
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 5 cut(s) 207, 600, 798, 846, 1047
MspR9I CCNGG 2 cut(s) 847, 1047
Mva1269I GAATGC 2 cut(s) 549, 676
MwoI GCNNNNNNNGC 4 cut(s) 314, 1100, 1391, 1394
NciI CCSGG 2 cut(s) 847, 1047
NcoI CCATGG 1 cut(s) 576
NdeII GATC 8 cut(s) 101, 157, 745, 804, 940, 1180, 1206, 1296
NmuCI GTSAC 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 640
PagI TCATGA 1 cut(s) 1293
PciI ACATGT 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 2 cut(s) 549, 676
PdmI GAANNNNTTC 1 cut(s) 1289
PfeI GAWTC 3 cut(s) 55, 113, 688
PkrI GCNGC 7 cut(s) 76, 715, 1096, 1247, 1341, 1387, 1396
PleI GAGTC 2 cut(s) 253, 400
PpsI GAGTC 2 cut(s) 253, 400
PscI ACATGT 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 515
PsuI RGATCY 3 cut(s) 101, 157, 745
RsaI GTAC 1 cut(s) 1002
RsaNI GTAC 1 cut(s) 1001
Rsr2I CGGWCCG 1 cut(s) 515
RsrII CGGWCCG 1 cut(s) 515
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 6 cut(s) 170, 189, 366, 495, 627, 1128
SatI GCNGC 7 cut(s) 75, 714, 1095, 1246, 1340, 1386, 1395
Sau3AI GATC 8 cut(s) 101, 157, 745, 804, 940, 1180, 1206, 1296
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 2 cut(s) 254, 401
ScrFI CCNGG 2 cut(s) 847, 1047
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 1 cut(s) 1062
SinI GGWCC 1 cut(s) 515
SmlI CTYRAG 3 cut(s) 198, 242, 303
SmoI CTYRAG 3 cut(s) 198, 242, 303
Sse9I AATT 6 cut(s) 190, 219, 730, 1116, 1251, 1257
SspMI CTAG 5 cut(s) 99, 105, 252, 1143, 1346
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 845, 1045
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 5 cut(s) 490, 515, 871, 1125, 1192
TaiI ACGT 3 cut(s) 26, 771, 1173
TaqI TCGA 2 cut(s) 14, 322
TaqII GACCGA 1 cut(s) 946
TasI AATT 6 cut(s) 190, 219, 730, 1116, 1251, 1257
TatI WGTACW 1 cut(s) 1000
TauI GCSGC 4 cut(s) 1248, 1342, 1388, 1397
TfiI GAWTC 3 cut(s) 55, 113, 688
Tru1I TTAA 6 cut(s) 170, 189, 366, 495, 627, 1128
Tru9I TTAA 6 cut(s) 170, 189, 366, 495, 627, 1128
TscAI CASTG 2 cut(s) 867, 1195
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 3 cut(s) 74, 713, 1094
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 5 cut(s) 37, 83, 740, 1282, 1343
TspGWI ACGGA 6 cut(s) 147, 170, 507, 1186, 1232, 1359
TspRI CASTG 2 cut(s) 867, 1195
VpaK11BI GGWCC 1 cut(s) 515
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 2 cut(s) 1116, 1257
XbaI TCTAGA 1 cut(s) 104
XceI RCATGY 1 cut(s) 640
XcmI CCANNNNNNNNNTGG 2 cut(s) 583, 706
XmiI GTMKAC 1 cut(s) 1373
XmnI GAANNNNTTC 1 cut(s) 1289
XspI CTAG 5 cut(s) 99, 105, 252, 1143, 1346
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.