RchiOBHm_Chr2g0107401

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002816
Physical Location & Seq
Forward (+)
18702646 .. 18703122
477 bp
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UTR
Exon/CDS
Intron
PRQ48142

Sequence Viewer

Length: 477 bp
ATGAACACCATTAGTTGGGGTATACTCATGCCAATCGGAGCTATCGTGGCTCGGAATTTCAAAGGGTTTGGTCCAGCATGGTTCTACATTCACGTTTCTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGCTGGCTCAGTCACCGGACTTATGCTGGGTCACAAGTCTTCAGGGATCGAATACAAAGGTCACAAATGCATAGGCATCACGCTGATGAGTCTTGCCACAGTCCAGGTGCTAGCTGGGTTCCTTTTGCGGCCTAAACCGGATCACAAGTATAGGCGGTTCTGGAATTTGTTTCACTATGCCCTTGGTTACACTGCAATTGTCCTTGGCATAGTAAACATCTTCAAAGGGTTTGATATATTGGAACCGCCAAAGTCGTGGAGGTATGCCTACATGGGGATTCTAGCTGCGTTGGTGTTTCTCGGTGTAGTAGGGGCAGCGTTCACACACTGGAACAAGAAGAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

158

Amino Acids

17.43

Weight (kDa)

10.01

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 29 - 120 6.8e-08 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 15, 109
AccI GTMKAC 1 cut(s) 22
AciI CCGC 3 cut(s) 256, 283, 374
AclWI GGATC 2 cut(s) 182, 276
AcsI RAATTY 2 cut(s) 55, 292
AcuI CTGAAG 1 cut(s) 153
AfiI CCNNNNNNNGG 3 cut(s) 15, 109, 402
AgsI TTSAA 2 cut(s) 61, 352
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 3 cut(s) 41, 242, 413
AluI AGCT 3 cut(s) 41, 242, 413
AlwI GGATC 2 cut(s) 182, 276
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 413, 443
ApoI RAATTY 2 cut(s) 55, 292
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 133
AsuNHI GCTAGC 1 cut(s) 238
AvaII GGWCC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 400, 455
BciT130I CCWGG 1 cut(s) 233
BfaI CTAG 2 cut(s) 239, 410
BisI GCNGC 3 cut(s) 257, 414, 444
BlsI GCNGC 3 cut(s) 258, 415, 445
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 248, 372
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 213
BmtI GCTAGC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 310, 331
BsaWI WCCGGW 2 cut(s) 143, 265
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 109, 402
Bse1I ACTGG 1 cut(s) 461
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 2 cut(s) 310, 331
BseLI CCNNNNNNNGG 3 cut(s) 15, 109, 402
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 400, 455
BseYI CCCAGC 2 cut(s) 154, 242
BshFI GGCC 1 cut(s) 259
BsiSI CCGG 2 cut(s) 144, 266
BslI CCNNNNNNNGG 3 cut(s) 15, 109, 402
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 174, 268
BspACI CCGC 3 cut(s) 256, 283, 374
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 248, 372
BspOI GCTAGC 1 cut(s) 242
BspPI GGATC 2 cut(s) 182, 276
BsrI ACTGG 1 cut(s) 461
BssECI CCNNGG 2 cut(s) 310, 331
BssMI GATC 2 cut(s) 174, 268
BssNAI GTATAC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 310, 331
Bst1107I GTATAC 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 133, 240
BstDEI CTNAG 1 cut(s) 136
BstKTI GATC 2 cut(s) 177, 271
BstMBI GATC 2 cut(s) 174, 268
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 400, 455
BstV2I GAAGAC 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 384
BstZ17I GTATAC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 318, 454
Cac8I GCNNGC 2 cut(s) 133, 240
Cfr13I GGNCC 1 cut(s) 71
CviAII CATG 3 cut(s) 28, 78, 400
CviJI RGCY 6 cut(s) 41, 50, 135, 242, 259, 413
CviKI_1 RGCY 6 cut(s) 41, 50, 135, 242, 259, 413
DdeI CTNAG 1 cut(s) 136
DpnI GATC 2 cut(s) 176, 270
DpnII GATC 2 cut(s) 174, 268
Eco130I CCWWGG 2 cut(s) 310, 331
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 310, 331
EcoT22I ATGCAT 1 cut(s) 200
ErhI CCWWGG 2 cut(s) 310, 331
FaeI CATG 3 cut(s) 31, 81, 403
FatI CATG 3 cut(s) 27, 77, 399
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 257, 414, 444
Fsp4HI GCNGC 3 cut(s) 257, 414, 444
FspBI CTAG 2 cut(s) 239, 410
GluI GCNGC 3 cut(s) 257, 414, 444
GsaI CCCAGC 2 cut(s) 158, 246
HaeIII GGCC 1 cut(s) 259
HapII CCGG 2 cut(s) 144, 266
Hin1II CATG 3 cut(s) 31, 81, 403
HinfI GANTC 2 cut(s) 217, 406
HpaII CCGG 2 cut(s) 144, 266
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 23, 343, 450
Hpy188I TCNGA 2 cut(s) 38, 54
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 3 cut(s) 23, 343, 450
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 198, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 3 cut(s) 31, 81, 403
Kzo9I GATC 2 cut(s) 174, 268
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 2 cut(s) 400, 455
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 239, 410
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 4 cut(s) 139, 158, 188, 314
MalI GATC 2 cut(s) 176, 270
MboI GATC 2 cut(s) 174, 268
MboII GAAGA 2 cut(s) 159, 340
MfeI CAATTG 1 cut(s) 324
MluCI AATT 5 cut(s) 55, 126, 292, 324, 472
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 1 cut(s) 381
Mph1103I ATGCAT 1 cut(s) 200
MseI TTAA 1 cut(s) 475
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 2 cut(s) 144, 266
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 174, 268
NheI GCTAGC 1 cut(s) 238
NlaIII CATG 3 cut(s) 31, 81, 403
NlaIV GGNNCC 2 cut(s) 248, 372
NmuCI GTSAC 3 cut(s) 139, 158, 188
NsiI ATGCAT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 406
PflMI CCANNNNNTGG 2 cut(s) 15, 109
PkrI GCNGC 3 cut(s) 258, 415, 445
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 2 cut(s) 154, 242
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 248, 372
PspPI GGNCC 1 cut(s) 71
PsrI GAACNNNNNNTAC 2 cut(s) 269, 301
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 475
SatI GCNGC 3 cut(s) 257, 414, 444
Sau3AI GATC 2 cut(s) 174, 268
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 233
SetI ASST 7 cut(s) 43, 96, 190, 237, 244, 392, 415
SfaNI GCATC 1 cut(s) 213
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 5 cut(s) 55, 126, 292, 324, 472
SsiI CCGC 3 cut(s) 256, 283, 374
SspMI CTAG 2 cut(s) 239, 410
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 2 cut(s) 310, 331
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 177
TasI AATT 5 cut(s) 55, 126, 292, 324, 472
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 1 cut(s) 475
Tru9I TTAA 1 cut(s) 475
TscAI CASTG 2 cut(s) 325, 461
TseFI GTSAC 3 cut(s) 139, 158, 188
TseI GCWGC 2 cut(s) 413, 443
Tsp45I GTSAC 3 cut(s) 139, 158, 188
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 325, 461
Van91I CCANNNNNTGG 2 cut(s) 15, 109
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 2 cut(s) 55, 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 2 cut(s) 239, 410
Zsp2I ATGCAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.