Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Reverse (-)

18099145 .. 18100296

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017544

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTAAGATTGTTCATTCACTCTTCTTTCTTTCGCTCTTATTCACTTCTTCACTCTCAACCCTAACCGCACAACCCTGCTCAACCCACCAGTTCCCTAACCACAAAACCTTTGCAGCATGTAATGATCTACCAGTCCTAAACTCCACTATTTACTGGAATTATTTCCCATCAAACGGAACAGTAGACCTTGCATTCAGGGAAACCCTAGCTGGCGATTCAAGATGGGCGGCGTGGGCGATAAACCCTAGTTCCAAGGGTATGGTGGGTTCACAAGCCTTGGTTGCTTTTCAAAGAAGCGATGGAACCATGGCTGTTTATTCATCGCCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTGTCCGCGGTTTACGAAAACGAAGAAATCACTATCTTTGCCACCCTAGGGCTCCCAAACAACGTTACAACTGTGAATCAATTATGGCAACAAGGACCTCTGCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCAGGCAAAGTCGAAGCAACCGGTACACATCACTCTTCGGTATCCACCATGAAAATCGCCCATGGGATAATGAACACCATTAGTTGGGGTATACTCATGCCAATCGGAGCTATCGTGGCTCGGAATTTCAAATGGTTTGGTCCAGCATGGTTCTACGTTCACGTTTCTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGCTGGCTCAGTCACCGGACTTATGCTGGGTCACAAGTCTTCAGGGATCGAATACAAAGGTCACAAATGCATAGGCATGACGCTGATGAGTCTTGCCACAGTCCAGGTGCTAGCTGGGTTCCTTTTGCGGCCTAAACCGGATCACAAGTATAGGCGGCTCTGGAATTTGTTCCACTATGCCCTTGGTTACACTGCAATTGTCCTTGGCATAGTAAACATCTTCAAAGGGTTTGATATATTGGAACCGCCAAAGTCGTGGAGGTATGCCTACATGGGGATTCTCGCTGCATTGGTGTTTCTCGGTGTAGTAGGGGCAGCGTTCACCTACTGGAACAACAAGAGGACTCAAGCTGCGAAGACACAACTGGAACAAAGGGCGGATGAAACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

384

Amino Acids

42.03

Weight (kDa)

9.22

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF568	PF04526	88 - 186	2.1e-28	Protein of unknown function (DUF568)
Cytochrom_B561	PF03188	208 - 330	8.6e-07	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	545
AccB7I	CCANNNNNTGG	2 cut(s)	645, 739
AccI	GTMKAC	3 cut(s)	186, 381, 652
AccII	CGCG	1 cut(s)	395
AciI	CCGC	8 cut(s)	69, 230, 393, 395, 886, 913, 1004, 1136
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	2 cut(s)	812, 906
AcsI	RAATTY	2 cut(s)	685, 922
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
AgeI	ACCGGT	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	222, 293, 691, 982
AjnI	CCWGG	2 cut(s)	502, 861
AluBI	AGCT	5 cut(s)	212, 339, 671, 872, 1109
AluI	AGCT	5 cut(s)	212, 339, 671, 872, 1109
AlwI	GGATC	2 cut(s)	812, 906
AoxI	GGCC	2 cut(s)	523, 887
ApeKI	GCWGC	4 cut(s)	116, 1043, 1073, 1109
ApoI	RAATTY	2 cut(s)	685, 922
AsiGI	ACCGGT	1 cut(s)	581
Asp700I	GAANNNNTTC	2 cut(s)	164, 926
AspA2I	CCTAGG	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	482, 524, 701
AsuHPI	GGTGA	2 cut(s)	763, 1072
AsuNHI	GCTAGC	1 cut(s)	868
AvaII	GGWCC	2 cut(s)	482, 701
AvrII	CCTAGG	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	2 cut(s)	789, 1121
BbvI	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BccI	CCATC	3 cut(s)	178, 219, 296
BciT130I	CCWGG	2 cut(s)	504, 863
BciVI	GTATCC	1 cut(s)	613
BfaI	CTAG	4 cut(s)	209, 249, 434, 869
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	7 cut(s)	117, 231, 887, 914, 1044, 1074, 1110
BlnI	CCTAGG	1 cut(s)	433
BlsI	GCNGC	7 cut(s)	118, 232, 888, 915, 1045, 1075, 1111
Bme1390I	CCNGG	2 cut(s)	504, 863
Bme18I	GGWCC	2 cut(s)	482, 701
BmgT120I	GGNCC	3 cut(s)	482, 524, 701
BmiI	GGNNCC	6 cut(s)	307, 365, 440, 547, 878, 1002
BmrFI	CCNGG	2 cut(s)	504, 863
BmtI	GCTAGC	1 cut(s)	872
BpiI	GAAGAC	2 cut(s)	789, 1121
BpuEI	CTTGAG	1 cut(s)	1089
BsaJI	CCNNGG	9 cut(s)	255, 279, 309, 393, 433, 549, 622, 940, 961
BsaWI	WCCGGW	3 cut(s)	581, 773, 895
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	5 cut(s)	91, 134, 161, 1091, 1128
BseBI	CCWGG	2 cut(s)	504, 863
BseDI	CCNNGG	9 cut(s)	255, 279, 309, 393, 433, 549, 622, 940, 961
BseGI	GGATG	1 cut(s)	1144
BseLI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	5 cut(s)	91, 134, 161, 1091, 1128
BseXI	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BseYI	CCCAGC	2 cut(s)	784, 872
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	525, 889
BshNI	GGYRCC	1 cut(s)	545
BshTI	ACCGGT	1 cut(s)	581
BsiSI	CCGG	3 cut(s)	582, 774, 896
BslI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	525, 889
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	3 cut(s)	127, 804, 898
Bsp19I	CCATGG	2 cut(s)	309, 622
BspACI	CCGC	8 cut(s)	69, 230, 393, 395, 886, 913, 1004, 1136
BspANI	GGCC	2 cut(s)	525, 889
BspCNI	CTCAG	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	6 cut(s)	307, 365, 440, 547, 878, 1002
BspOI	GCTAGC	1 cut(s)	872
BspPI	GGATC	2 cut(s)	812, 906
BspT107I	GGYRCC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	5 cut(s)	91, 134, 161, 1091, 1128
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	9 cut(s)	255, 279, 309, 393, 433, 549, 622, 940, 961
BssMI	GATC	3 cut(s)	127, 804, 898
BssNAI	GTATAC	1 cut(s)	653
BssT1I	CCWWGG	8 cut(s)	255, 279, 309, 433, 549, 622, 940, 961
Bst1107I	GTATAC	1 cut(s)	653
Bst2UI	CCWGG	2 cut(s)	504, 863
Bst4CI	ACNGT	4 cut(s)	184, 460, 859, 1147
Bst6I	CTCTTC	2 cut(s)	29, 601
BstC8I	GCNNGC	3 cut(s)	214, 763, 870
BstDEI	CTNAG	2 cut(s)	6, 766
BstDSI	CCRYGG	3 cut(s)	309, 393, 622
BstF5I	GGATG	1 cut(s)	1144
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	3 cut(s)	130, 807, 901
BstMBI	GATC	3 cut(s)	127, 804, 898
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 284, 677
BstNI	CCWGG	2 cut(s)	504, 863
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	502, 861
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BstV2I	GAAGAC	2 cut(s)	789, 1121
BstXI	CCANNNNNNTGG	2 cut(s)	262, 1014
BstZ17I	GTATAC	1 cut(s)	653
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	525, 889
BtgI	CCRYGG	3 cut(s)	309, 393, 622
BtgZI	GCGATG	2 cut(s)	309, 315
BtsCI	GGATG	1 cut(s)	1144
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	1 cut(s)	948
Cac8I	GCNNGC	3 cut(s)	214, 763, 870
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	3 cut(s)	482, 524, 701
Cfr42I	CCGCGG	1 cut(s)	396
CseI	GACGC	1 cut(s)	847
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	585
CspAI	ACCGGT	1 cut(s)	581
CviAII	CATG	9 cut(s)	120, 310, 491, 610, 623, 658, 708, 835, 1030
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	2 cut(s)	6, 766
DpnI	GATC	3 cut(s)	129, 806, 900
DpnII	GATC	3 cut(s)	127, 804, 898
Eam1104I	CTCTTC	2 cut(s)	29, 601
EarI	CTCTTC	2 cut(s)	29, 601
EciI	GGCGGA	1 cut(s)	1151
Eco130I	CCWWGG	8 cut(s)	255, 279, 309, 433, 549, 622, 940, 961
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	482, 701
Eco57I	CTGAAG	1 cut(s)	783
EcoO109I	RGGNCCY	2 cut(s)	482, 524
EcoRII	CCWGG	2 cut(s)	502, 861
EcoT14I	CCWWGG	8 cut(s)	255, 279, 309, 433, 549, 622, 940, 961
EcoT22I	ATGCAT	1 cut(s)	830
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	8 cut(s)	255, 279, 309, 433, 549, 622, 940, 961
FaeI	CATG	9 cut(s)	123, 313, 494, 613, 626, 661, 711, 838, 1033
FatI	CATG	9 cut(s)	119, 309, 490, 609, 622, 657, 707, 834, 1029
FblI	GTMKAC	3 cut(s)	186, 381, 652
Fnu4HI	GCNGC	7 cut(s)	117, 231, 887, 914, 1044, 1074, 1110
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	7 cut(s)	117, 231, 887, 914, 1044, 1074, 1110
FspBI	CTAG	4 cut(s)	209, 249, 434, 869
GluI	GCNGC	7 cut(s)	117, 231, 887, 914, 1044, 1074, 1110
GsaI	CCCAGC	2 cut(s)	788, 876
HaeIII	GGCC	2 cut(s)	525, 889
HapII	CCGG	3 cut(s)	582, 774, 896
HgaI	GACGC	1 cut(s)	847
Hin1II	CATG	9 cut(s)	123, 313, 494, 613, 626, 661, 711, 838, 1033
HinfI	GANTC	5 cut(s)	218, 463, 847, 1036, 1102
HpaII	CCGG	3 cut(s)	582, 774, 896
HphI	GGTGA	2 cut(s)	763, 1072
Hpy166II	GTNNAC	9 cut(s)	187, 272, 382, 400, 587, 653, 721, 973, 1080
Hpy188I	TCNGA	2 cut(s)	668, 684
Hpy188III	TCNNGA	2 cut(s)	222, 919
Hpy8I	GTNNAC	9 cut(s)	187, 272, 382, 400, 587, 653, 721, 973, 1080
HpyCH4III	ACNGT	4 cut(s)	184, 460, 859, 1147
HpyCH4IV	ACGT	3 cut(s)	450, 717, 723
HpyCH4V	TGCA	7 cut(s)	116, 194, 490, 511, 828, 953, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 284, 677
HpyF3I	CTNAG	2 cut(s)	6, 766
HpySE526I	ACGT	3 cut(s)	450, 717, 723
Hsp92II	CATG	9 cut(s)	123, 313, 494, 613, 626, 661, 711, 838, 1033
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	127, 804, 898
LmnI	GCTCC	3 cut(s)	355, 444, 668
Lsp1109I	GCAGC	4 cut(s)	128, 1030, 1085, 1096
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	4 cut(s)	209, 249, 434, 869
MaeII	ACGT	3 cut(s)	450, 717, 723
MaeIII	GTNAC	6 cut(s)	451, 494, 769, 788, 818, 944
MalI	GATC	3 cut(s)	129, 806, 900
MboI	GATC	3 cut(s)	127, 804, 898
MboII	GAAGA	7 cut(s)	16, 42, 422, 588, 789, 970, 1126
MfeI	CAATTG	1 cut(s)	954
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	6 cut(s)	160, 467, 685, 756, 922, 954
MlyI	GAGTC	2 cut(s)	856, 1096
MnlI	CCTC	4 cut(s)	377, 495, 1011, 1092
Mph1103I	ATGCAT	1 cut(s)	830
MroXI	GAANNNNTTC	2 cut(s)	164, 926
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	833
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	3 cut(s)	582, 774, 896
MspR9I	CCNGG	2 cut(s)	504, 863
MunI	CAATTG	1 cut(s)	954
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	504, 863
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	236, 284, 677
NcoI	CCATGG	2 cut(s)	309, 622
NdeII	GATC	3 cut(s)	127, 804, 898
NheI	GCTAGC	1 cut(s)	868
NlaIII	CATG	9 cut(s)	123, 313, 494, 613, 626, 661, 711, 838, 1033
NlaIV	GGNNCC	6 cut(s)	307, 365, 440, 547, 878, 1002
NmuCI	GTSAC	3 cut(s)	769, 788, 818
NsiI	ATGCAT	1 cut(s)	830
NspI	RCATGY	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	2 cut(s)	164, 926
PfeI	GAWTC	3 cut(s)	218, 463, 1036
PflMI	CCANNNNNTGG	2 cut(s)	645, 739
PinAI	ACCGGT	1 cut(s)	581
PkrI	GCNGC	7 cut(s)	118, 232, 888, 915, 1045, 1075, 1111
PleI	GAGTC	2 cut(s)	855, 1096
PpsI	GAGTC	2 cut(s)	855, 1096
PpuMI	RGGWCCY	1 cut(s)	482
Psp1406I	AACGTT	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	502, 861
PspFI	CCCAGC	2 cut(s)	784, 872
PspGI	CCWGG	2 cut(s)	502, 861
PspN4I	GGNNCC	6 cut(s)	307, 365, 440, 547, 878, 1002
PspPI	GGNCC	3 cut(s)	482, 524, 701
PspPPI	RGGWCCY	1 cut(s)	482
PsrI	GAACNNNNNNTAC	2 cut(s)	253, 285
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	833
SacII	CCGCGG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	7 cut(s)	117, 231, 887, 914, 1044, 1074, 1110
Sau3AI	GATC	3 cut(s)	127, 804, 898
Sau96I	GGNCC	3 cut(s)	482, 524, 701
SchI	GAGTC	2 cut(s)	856, 1096
ScrFI	CCNGG	2 cut(s)	504, 863
SduI	GDGCHC	1 cut(s)	441
SexAI	ACCWGGT	1 cut(s)	502
Sfr303I	CCGCGG	1 cut(s)	396
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	482, 701
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	1104
SmoI	CTYRAG	1 cut(s)	1104
Sse9I	AATT	6 cut(s)	160, 467, 685, 756, 922, 954
SsiI	CCGC	8 cut(s)	69, 230, 393, 395, 886, 913, 1004, 1136
SspMI	CTAG	4 cut(s)	209, 249, 434, 869
StyD4I	CCNGG	2 cut(s)	502, 861
StyI	CCWWGG	8 cut(s)	255, 279, 309, 433, 549, 622, 940, 961
TaaI	ACNGT	4 cut(s)	184, 460, 859, 1147
TaiI	ACGT	3 cut(s)	453, 720, 726
TaqI	TCGA	3 cut(s)	515, 573, 807
TasI	AATT	6 cut(s)	160, 467, 685, 756, 922, 954
TauI	GCSGC	3 cut(s)	233, 889, 916
TfiI	GAWTC	3 cut(s)	218, 463, 1036
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	955
TseFI	GTSAC	3 cut(s)	769, 788, 818
TseI	GCWGC	4 cut(s)	116, 1043, 1073, 1109
Tsp45I	GTSAC	3 cut(s)	769, 788, 818
TspDTI	ATGAA	4 cut(s)	5, 312, 626, 647
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	955
Van91I	CCANNNNNTGG	2 cut(s)	645, 739
VpaK11BI	GGWCC	2 cut(s)	482, 701
XapI	RAATTY	2 cut(s)	685, 922
XceI	RCATGY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	3 cut(s)	262, 869, 938
XmaJI	CCTAGG	1 cut(s)	433
XmiI	GTMKAC	3 cut(s)	186, 381, 652
XmnI	GAANNNNTTC	2 cut(s)	164, 926
XspI	CTAG	4 cut(s)	209, 249, 434, 869
Zsp2I	ATGCAT	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.