Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Reverse (-)

12033751 .. 12034997

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTAAGTTGGTTCGGTCGCTCTTCTTCCTCACGCTTTTAGTTACTTCTTCATTCTCAACCCCAACTCCACAACCCTGCTCAACCCACCACTTCCCTGACCACAAATCCTTTGCAGCATGTAATGATCTACCGGTTCTAAACTCCACCATTTACTGGAACTATTTCCCATCCAACGGAACAGTAGACCTTGCGTTCAGAGCAACCCTAGTTGGCGATTCAGGATGGGTGGCATGGGCGATAAACCCTAGCTCCAAGGGTATGGTTGGCTCGCAGGCCTTCGTCTCTTTTCAAAGAAGAGACGGAACCATGGCCGTGTACACATCCCCTATAAAAAGCTACGGCACTCGCTTGGAGAAAGGGAACCTCACCTTCCCGGTCTACGCCTTGTCCGCAGTTCACGAGAACAAAGACATCACCATCTTTGCCACCCTAGGGCTCCCTAACAATGTTACAACAGTGAACCAGTTATGGCAACAAGGGCCTCTGCATGGTGATACACCAGGTATGCACAAGATGTCCGGCCCTTACCTTAAATCCTATGGCACCTTGGATTTCCTTTCCGGCAAAGTCGAAGCAACGGGTGCACATCACTCTATGGTGTCCATGAAAATCGTCCATGCGGTACTAAACACCGTTAGTTGGGGTGTACTATTGCCAGTAGGAGTGATCGTGGCTCGGAACTTCAAGATGTATCCAGCATGGTTCCCCGTTCACCTTACATGCGTAATATCGGGTGTTACTTTTGCAGTTTTTGGCTTCGTAACTGGATCTATACTCGGCTCCGAATCTACAGGGATCCAATACAAAGGTCACAAAAGCATAGGCTGGACCCTGCTCTTTCTAAGCATAGTCCAGGGGATGGTTGGGTTTTATCTCCGCCCTGAAAAAGGAGACAAAGATAGGTGGTTGTGGGATCTGTTCCACCGTGCCTTGGGTTACACGTTACTCATCCTCGGCCAAGTAAACATCTTCAAAGGGTTTGATATATTGGAACCACCAAAGCCGTGGAAGTATGCCTACATAGGGGTTCTAGCTTTGTTGCTGTTATTTGGTGCAGGATTGGCATGCTACACCTGCTTCACACAATGGAACAAGAAGAGAACTGAAGCTTCGAAGACACAACTGGAACAAAGCGGGGAAGGAATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

385

Amino Acids

42.35

Weight (kDa)

9.29

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF568	PF04526	88 - 186	5.4e-24	Protein of unknown function (DUF568)
DUF2427	PF10348	202 - 294	3.8e-06	Domain of unknown function (DUF2427)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1085
Acc36I	ACCTGC	1 cut(s)	1085
AccB1I	GGYRCC	1 cut(s)	545
AccB7I	CCANNNNNTGG	2 cut(s)	156, 862
AccI	GTMKAC	2 cut(s)	186, 381
AciI	CCGC	4 cut(s)	393, 623, 880, 1137
AclWI	GGATC	4 cut(s)	778, 793, 806, 924
AcoI	YGGCCR	2 cut(s)	312, 958
AcuI	CTGAAG	1 cut(s)	1128
AfaI	GTAC	3 cut(s)	320, 627, 651
AfiI	CCNNNNNNNGG	9 cut(s)	156, 176, 435, 491, 642, 862, 890, 934, 1026
AflIII	ACRYGT	1 cut(s)	942
AgeI	ACCGGT	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	293, 688, 976
AjnI	CCWGG	2 cut(s)	502, 855
AluBI	AGCT	4 cut(s)	252, 339, 1037, 1112
AluI	AGCT	4 cut(s)	252, 339, 1037, 1112
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	3 cut(s)	289, 294, 888
Alw44I	GTGCAC	1 cut(s)	585
AlwI	GGATC	4 cut(s)	778, 793, 806, 924
AoxI	GGCC	5 cut(s)	276, 312, 482, 523, 958
ApaLI	GTGCAC	1 cut(s)	585
ApeKI	GCWGC	1 cut(s)	116
AsiGI	ACCGGT	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	164
AspA2I	CCTAGG	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	482, 524, 831
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	4 cut(s)	361, 409, 506, 707
AsuII	TTCGAA	1 cut(s)	1115
AvaII	GGWCC	1 cut(s)	831
AvrII	CCTAGG	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	589
BamHI	GGATCC	1 cut(s)	798
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	441
BarI	GAAGNNNNNNTAC	2 cut(s)	1004, 1036
BauI	CACGAG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	1124
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	4 cut(s)	178, 219, 428, 856
BceAI	ACGGC	3 cut(s)	299, 358, 991
BciT130I	CCWGG	2 cut(s)	504, 857
BciVI	GTATCC	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	3 cut(s)	289, 294, 888
BfaI	CTAG	4 cut(s)	209, 249, 434, 1034
BfmI	CTRYAG	1 cut(s)	792
BfuAI	ACCTGC	1 cut(s)	1085
BfuI	GTATCC	1 cut(s)	705
BisI	GCNGC	1 cut(s)	117
BlnI	CCTAGG	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	377, 504, 857
Bme18I	GGWCC	1 cut(s)	831
BmgT120I	GGNCC	3 cut(s)	482, 524, 831
BmiI	GGNNCC	9 cut(s)	307, 365, 440, 547, 707, 784, 800, 833, 996
BmrFI	CCNGG	3 cut(s)	377, 504, 857
BpiI	GAAGAC	1 cut(s)	1124
Bpu14I	TTCGAA	1 cut(s)	1115
BpuMI	CCSGG	1 cut(s)	377
BsaJI	CCNNGG	8 cut(s)	255, 309, 433, 549, 856, 933, 955, 1007
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	6 cut(s)	52, 82, 236, 266, 657, 687
Bsc4I	CCNNNNNNNGG	9 cut(s)	156, 176, 435, 491, 642, 862, 890, 934, 1026
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	5 cut(s)	161, 466, 659, 772, 1131
BseBI	CCWGG	2 cut(s)	504, 857
BseDI	CCNNGG	8 cut(s)	255, 309, 433, 549, 856, 933, 955, 1007
BseGI	GGATG	5 cut(s)	170, 230, 323, 867, 951
BseLI	CCNNNNNNNGG	9 cut(s)	156, 176, 435, 491, 642, 862, 890, 934, 1026
BseNI	ACTGG	5 cut(s)	161, 466, 659, 772, 1131
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	1077
Bsh1285I	CGRYCG	1 cut(s)	20
BshFI	GGCC	5 cut(s)	278, 314, 484, 525, 960
BshNI	GGYRCC	1 cut(s)	545
BshTI	ACCGGT	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	4 cut(s)	134, 377, 522, 564
BslI	CCNNNNNNNGG	9 cut(s)	156, 176, 435, 491, 642, 862, 890, 934, 1026
BsmAI	GTCTC	3 cut(s)	289, 294, 888
BsmBI	CGTCTC	2 cut(s)	289, 294
BsnI	GGCC	5 cut(s)	278, 314, 484, 525, 960
Bsp119I	TTCGAA	1 cut(s)	1115
Bsp1286I	GDGCHC	2 cut(s)	441, 589
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	5 cut(s)	127, 669, 770, 798, 916
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	4 cut(s)	393, 623, 880, 1137
BspANI	GGCC	5 cut(s)	278, 314, 484, 525, 960
BspLI	GGNNCC	9 cut(s)	307, 365, 440, 547, 707, 784, 800, 833, 996
BspMI	ACCTGC	1 cut(s)	1085
BspPI	GGATC	4 cut(s)	778, 793, 806, 924
BspQI	GCTCTTC	1 cut(s)	29
BspT104I	TTCGAA	1 cut(s)	1115
BspT107I	GGYRCC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	5 cut(s)	161, 466, 659, 772, 1131
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	8 cut(s)	255, 309, 433, 549, 856, 933, 955, 1007
BssMI	GATC	5 cut(s)	127, 669, 770, 798, 916
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	5 cut(s)	255, 309, 433, 549, 933
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	504, 857
Bst4CI	ACNGT	4 cut(s)	184, 460, 637, 929
Bst6I	CTCTTC	3 cut(s)	29, 292, 1094
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	1115
BstC8I	GCNNGC	3 cut(s)	272, 276, 1069
BstDEI	CTNAG	2 cut(s)	6, 845
BstDSI	CCRYGG	2 cut(s)	309, 1007
BstENI	CCTNNNNNAGG	1 cut(s)	888
BstF5I	GGATG	5 cut(s)	170, 230, 323, 867, 951
BstKTI	GATC	5 cut(s)	130, 672, 773, 801, 919
BstMAI	GTCTC	3 cut(s)	289, 294, 888
BstMBI	GATC	5 cut(s)	127, 669, 770, 798, 916
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	6 cut(s)	200, 392, 481, 584, 1064, 1077
BstNI	CCWGG	2 cut(s)	504, 857
BstNSI	RCATGY	3 cut(s)	123, 726, 1071
BstSCI	CCNGG	3 cut(s)	375, 502, 855
BstSFI	CTRYAG	1 cut(s)	792
BstSLI	GKGCMC	1 cut(s)	589
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	1124
BstX2I	RGATCY	3 cut(s)	770, 798, 916
BstXI	CCANNNNNNTGG	2 cut(s)	262, 1008
BstYI	RGATCY	3 cut(s)	770, 798, 916
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	5 cut(s)	278, 314, 484, 525, 960
BtgI	CCRYGG	2 cut(s)	309, 1007
BtsCI	GGATG	5 cut(s)	170, 230, 323, 867, 951
BtsIMutI	CAGTG	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	1085
Cac8I	GCNNGC	3 cut(s)	272, 276, 1069
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	482, 524, 831
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	3 cut(s)	319, 626, 650
CspAI	ACCGGT	1 cut(s)	133
CviAII	CATG	9 cut(s)	120, 234, 310, 491, 607, 620, 702, 723, 1068
CviQI	GTAC	3 cut(s)	319, 626, 650
DdeI	CTNAG	2 cut(s)	6, 845
DpnI	GATC	5 cut(s)	129, 671, 772, 800, 918
DpnII	GATC	5 cut(s)	127, 669, 770, 798, 916
EaeI	YGGCCR	2 cut(s)	312, 958
Eam1104I	CTCTTC	3 cut(s)	29, 292, 1094
EarI	CTCTTC	3 cut(s)	29, 292, 1094
EciI	GGCGGA	1 cut(s)	869
Eco130I	CCWWGG	5 cut(s)	255, 309, 433, 549, 933
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	831
Eco57I	CTGAAG	1 cut(s)	1128
EcoNI	CCTNNNNNAGG	1 cut(s)	888
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	502, 855
EcoT14I	CCWWGG	5 cut(s)	255, 309, 433, 549, 933
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	5 cut(s)	255, 309, 433, 549, 933
Esp3I	CGTCTC	2 cut(s)	289, 294
FaeI	CATG	9 cut(s)	123, 237, 313, 494, 610, 623, 705, 726, 1071
FatI	CATG	9 cut(s)	119, 233, 309, 490, 606, 619, 701, 722, 1067
FauI	CCCGC	1 cut(s)	1130
FblI	GTMKAC	2 cut(s)	186, 381
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	5 cut(s)	157, 237, 310, 874, 938
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	4 cut(s)	209, 249, 434, 1034
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	278, 314, 484, 525, 960
HapII	CCGG	4 cut(s)	134, 377, 522, 564
Hin1II	CATG	9 cut(s)	123, 237, 313, 494, 610, 623, 705, 726, 1071
HindIII	AAGCTT	1 cut(s)	1110
HinfI	GANTC	2 cut(s)	218, 788
HpaII	CCGG	4 cut(s)	134, 377, 522, 564
HphI	GGTGA	4 cut(s)	361, 409, 506, 707
Hpy188I	TCNGA	3 cut(s)	200, 681, 787
Hpy188III	TCNNGA	3 cut(s)	222, 401, 688
HpyAV	CCTTC	3 cut(s)	289, 382, 1136
HpyCH4III	ACNGT	4 cut(s)	184, 460, 637, 929
HpyCH4IV	ACGT	1 cut(s)	944
HpyCH4V	TGCA	6 cut(s)	116, 490, 511, 587, 749, 1058
HpyF10VI	GCNNNNNNNGC	6 cut(s)	200, 392, 481, 584, 1064, 1077
HpyF3I	CTNAG	2 cut(s)	6, 845
HpySE526I	ACGT	1 cut(s)	944
Hsp92II	CATG	9 cut(s)	123, 237, 313, 494, 610, 623, 705, 726, 1071
Kzo9I	GATC	5 cut(s)	127, 669, 770, 798, 916
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	3 cut(s)	257, 444, 788
Lsp1109I	GCAGC	1 cut(s)	128
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	4 cut(s)	209, 249, 434, 1034
MaeII	ACGT	1 cut(s)	944
MaeIII	GTNAC	7 cut(s)	43, 451, 739, 763, 812, 938, 945
MalI	GATC	5 cut(s)	129, 671, 772, 800, 918
MboI	GATC	5 cut(s)	127, 669, 770, 798, 916
MboII	GAAGA	7 cut(s)	16, 19, 42, 309, 964, 1111, 1129
MflI	RGATCY	3 cut(s)	770, 798, 916
MhlI	GDGCHC	2 cut(s)	441, 589
MluCI	AATT	1 cut(s)	1146
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	41, 377, 495, 965
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	4 cut(s)	134, 377, 522, 564
MspR9I	CCNGG	3 cut(s)	377, 504, 857
MvaI	CCWGG	2 cut(s)	504, 857
MwoI	GCNNNNNNNGC	6 cut(s)	200, 392, 481, 584, 1064, 1077
NciI	CCSGG	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	5 cut(s)	127, 669, 770, 798, 916
NlaIII	CATG	9 cut(s)	123, 237, 313, 494, 610, 623, 705, 726, 1071
NlaIV	GGNNCC	9 cut(s)	307, 365, 440, 547, 707, 784, 800, 833, 996
NmeAIII	GCCGAG	2 cut(s)	759, 936
NmuCI	GTSAC	1 cut(s)	812
NspI	RCATGY	3 cut(s)	123, 726, 1071
NspV	TTCGAA	1 cut(s)	1115
PaeI	GCATGC	1 cut(s)	1071
PaqCI	CACCTGC	1 cut(s)	1085
PceI	AGGCCT	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	218, 788
PflMI	CCANNNNNTGG	2 cut(s)	156, 862
PinAI	ACCGGT	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	502, 855
PspGI	CCWGG	2 cut(s)	502, 855
PspN4I	GGNNCC	9 cut(s)	307, 365, 440, 547, 707, 784, 800, 833, 996
PspPI	GGNCC	3 cut(s)	482, 524, 831
PsuI	RGATCY	3 cut(s)	770, 798, 916
RsaI	GTAC	3 cut(s)	320, 627, 651
RsaNI	GTAC	3 cut(s)	319, 626, 650
RseI	CAYNNNNRTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	5 cut(s)	127, 669, 770, 798, 916
Sau96I	GGNCC	3 cut(s)	482, 524, 831
ScrFI	CCNGG	3 cut(s)	377, 504, 857
SduI	GDGCHC	2 cut(s)	441, 589
SexAI	ACCWGGT	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	792
SfuI	TTCGAA	1 cut(s)	1115
SinI	GGWCC	1 cut(s)	831
SmiMI	CAYNNNNRTG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	1071
Sse9I	AATT	1 cut(s)	1146
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	4 cut(s)	393, 623, 880, 1137
SspMI	CTAG	4 cut(s)	209, 249, 434, 1034
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	3 cut(s)	375, 502, 855
StyI	CCWWGG	5 cut(s)	255, 309, 433, 549, 933
TaaI	ACNGT	4 cut(s)	184, 460, 637, 929
TaiI	ACGT	1 cut(s)	947
TaqI	TCGA	2 cut(s)	573, 1115
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	1146
TatI	WGTACW	2 cut(s)	318, 649
TfiI	GAWTC	2 cut(s)	218, 788
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	2 cut(s)	42, 623
TspGWI	ACGGA	2 cut(s)	192, 318
TspRI	CASTG	1 cut(s)	465
Van91I	CCANNNNNTGG	2 cut(s)	156, 862
VneI	GTGCAC	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	831
XagI	CCTNNNNNAGG	1 cut(s)	888
XceI	RCATGY	3 cut(s)	123, 726, 1071
XcmI	CCANNNNNNNNNTGG	2 cut(s)	863, 1005
XmaJI	CCTAGG	1 cut(s)	433
XmiI	GTMKAC	2 cut(s)	186, 381
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	4 cut(s)	209, 249, 434, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.