RchiOBHm_Chr2g0107391

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002816
Physical Location & Seq
Forward (+)
18701508 .. 18702628
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48141

Sequence Viewer

Length: 651 bp
ATGGCTAAGATTGTTCCTTCACTCTTCCTTCTCTCCCTCTTATTCACTTCTTCATTCTCAACCCTAACCGCACAAACCTGCTCAACCCTAACCGCACAAACCTGCTCAACCCACCAGTTCCCTAACCACAAAACCTTTGCAGCATGTAATGATCTACCAGTCCTAAAGTACTCCACTATTTACTGGAATTATTTCCCATCAAACGGAACAGTAGACCTTGCATTCAGAGAAACCCTATCCATATTTGATCTAACAGATATTAGATGGGCGGCGTGGGCGATAAACCCTAGTTCCAAGGGTATGGTGGGCTTGCAAGCCTTGGTCGCTTTTCAAAGAAGCGATGGAACTATGGCTGTTTATTCGTCGCCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTGTCCGCGGTTTACGAAAACAAAGAAATCACTATCTTTGCCACCCTTGGGCTCCCAAACAATGTTACAACTGTGAATCAACTATTGCAACAAGGACCTCTGCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCCGGCAAAGTGGAAGCAACCGATACACATCACTCTGTGGTGTCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

216

Amino Acids

23.59

Weight (kDa)

6.35

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 101 - 199 6.8e-25 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 86, 110
AccB1I GGYRCC 1 cut(s) 584
AccI GTMKAC 2 cut(s) 213, 420
AccII CGCG 1 cut(s) 434
AciI CCGC 6 cut(s) 69, 93, 269, 432, 434, 645
AdeI CACNNNGTG 1 cut(s) 637
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 203, 474, 530
AgsI TTSAA 1 cut(s) 332
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 1 cut(s) 378
AluI AGCT 1 cut(s) 378
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 521, 563
AvaII GGWCC 1 cut(s) 521
BanI GGYRCC 1 cut(s) 584
BanII GRGCYC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 152
BccI CCATC 3 cut(s) 205, 258, 335
BciT130I CCWGG 1 cut(s) 543
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 2 cut(s) 86, 110
BisI GCNGC 2 cut(s) 141, 270
BlsI GCNGC 2 cut(s) 142, 271
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 2 cut(s) 521, 563
BmiI GGNNCC 3 cut(s) 404, 479, 586
BmrFI CCNGG 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 5 cut(s) 294, 318, 432, 472, 588
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 474, 530
Bse1I ACTGG 3 cut(s) 115, 158, 188
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 5 cut(s) 294, 318, 432, 472, 588
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 3 cut(s) 203, 474, 530
BseNI ACTGG 3 cut(s) 115, 158, 188
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 1 cut(s) 564
BshNI GGYRCC 1 cut(s) 584
BsiSI CCGG 1 cut(s) 603
BslI CCNNNNNNNGG 3 cut(s) 203, 474, 530
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 2 cut(s) 151, 247
BspACI CCGC 6 cut(s) 69, 93, 269, 432, 434, 645
BspANI GGCC 1 cut(s) 564
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 3 cut(s) 404, 479, 586
BspMI ACCTGC 2 cut(s) 86, 110
BspT107I GGYRCC 1 cut(s) 584
BsrI ACTGG 3 cut(s) 115, 158, 188
BssECI CCNNGG 5 cut(s) 294, 318, 432, 472, 588
BssMI GATC 2 cut(s) 151, 247
BssT1I CCWWGG 4 cut(s) 294, 318, 472, 588
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 211, 499
Bst6I CTCTTC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 311, 315
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 432
BstFNI CGCG 1 cut(s) 434
BstKTI GATC 2 cut(s) 154, 250
BstMBI GATC 2 cut(s) 151, 247
BstMWI GCNNNNNNNGC 2 cut(s) 275, 323
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 541
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 86, 110
Cac8I GCNNGC 2 cut(s) 311, 315
Cfr13I GGNCC 2 cut(s) 521, 563
Cfr42I CCGCGG 1 cut(s) 435
CsiI ACCWGGT 1 cut(s) 541
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 144, 530, 648
CviJI RGCY 7 cut(s) 5, 309, 317, 353, 378, 478, 564
CviKI_1 RGCY 7 cut(s) 5, 309, 317, 353, 378, 478, 564
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 153, 249
DpnII GATC 2 cut(s) 151, 247
DraIII CACNNNGTG 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 4 cut(s) 294, 318, 472, 588
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 521
EcoO109I RGGNCCY 2 cut(s) 521, 563
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 4 cut(s) 294, 318, 472, 588
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 4 cut(s) 294, 318, 472, 588
FaeI CATG 3 cut(s) 147, 533, 651
FaiI YATR 9 cut(s) 145, 242, 302, 350, 371, 531, 548, 582, 649
FatI CATG 3 cut(s) 143, 529, 647
FblI GTMKAC 2 cut(s) 213, 420
Fnu4HI GCNGC 2 cut(s) 141, 270
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 141, 270
FspBI CTAG 1 cut(s) 288
GluI GCNGC 2 cut(s) 141, 270
HaeIII GGCC 1 cut(s) 564
HapII CCGG 1 cut(s) 603
Hin1II CATG 3 cut(s) 147, 533, 651
HinfI GANTC 1 cut(s) 502
HpaII CCGG 1 cut(s) 603
Hpy166II GTNNAC 3 cut(s) 214, 421, 439
Hpy188I TCNGA 1 cut(s) 227
Hpy8I GTNNAC 3 cut(s) 214, 421, 439
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 2 cut(s) 27, 38
HpyCH4III ACNGT 2 cut(s) 211, 499
HpyCH4V TGCA 6 cut(s) 140, 221, 313, 514, 529, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 323
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 3 cut(s) 147, 533, 651
KspI CCGCGG 1 cut(s) 435
Kzo9I GATC 2 cut(s) 151, 247
LmnI GCTCC 2 cut(s) 394, 483
Lsp1109I GCAGC 1 cut(s) 152
MabI ACCWGGT 1 cut(s) 541
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 490, 533
MalI GATC 2 cut(s) 153, 249
MboI GATC 2 cut(s) 151, 247
MboII GAAGA 2 cut(s) 16, 42
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 1 cut(s) 187
MnlI CCTC 3 cut(s) 47, 416, 534
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 1 cut(s) 573
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 2 cut(s) 275, 323
NdeII GATC 2 cut(s) 151, 247
NlaIII CATG 3 cut(s) 147, 533, 651
NlaIV GGNNCC 3 cut(s) 404, 479, 586
NspI RCATGY 1 cut(s) 147
PctI GAATGC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 502
PkrI GCNGC 2 cut(s) 142, 271
PpuMI RGGWCCY 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 3 cut(s) 404, 479, 586
PspPI GGNCC 2 cut(s) 521, 563
PspPPI RGGWCCY 1 cut(s) 521
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SacII CCGCGG 1 cut(s) 435
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 2 cut(s) 141, 270
Sau3AI GATC 2 cut(s) 151, 247
Sau96I GGNCC 2 cut(s) 521, 563
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 1 cut(s) 480
SexAI ACCWGGT 1 cut(s) 541
Sfr303I CCGCGG 1 cut(s) 435
SgrBI CCGCGG 1 cut(s) 435
SinI GGWCC 1 cut(s) 521
Sse9I AATT 1 cut(s) 187
SsiI CCGC 6 cut(s) 69, 93, 269, 432, 434, 645
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 4 cut(s) 294, 318, 472, 588
TaaI ACNGT 2 cut(s) 211, 499
TaqI TCGA 1 cut(s) 554
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 521
XceI RCATGY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmiI GTMKAC 2 cut(s) 213, 420
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.