Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Reverse (-)

9782560 .. 9783800

Gene Structure 1241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTAAGATTGTTCGTTCGCTTTTCTTTCTCTCGCTGGTAATCACTTCTTCCTTCTCACCCATAACCGCACAAGCCTGCTCATCCCATCAATTCCCTGACCACAAAACCTTTGCAGCATGTAACCCTAGTTCCAAAGGTATGGTGGGCTCGCAAGCCTTGGTCGCTTTTCAGAGAACCGATGGAATCATGGCTGTTTACTCATCTCCTATCAAGAGCTACGGCACTCGATTGGAGCAAGGGAACCTCACCTTTCGATTGGAGCAAGGGAACCTCACCTTTCCTGTGTACACCTTGTCTGCGGTTCAGGAAAACAAAGAAATCACCATCTTTGCCAGCCTAGGGCTCCCAAACAATGTCACAACTGTGAATCATCTATGGCAACAAGGACGGAAGGACCTCTGCATGGTAACACACCAGGCATGCACTCGGATGTCAGGCCCTTACCTTAAATCCTATGGCACCTTGGATTTCCTTTCCGGCAAAGTCGAAGCAACTGGTACACATCACTCTTTGTTGTCCCCAATGAAAATCTTCCATGGGACAATAAACACCGTCAGTTGGGGTGTACTCTTACCTCTAGGAGCCATTCTGGCTCGGAACGTCAAAGTGTTGGGTCCAGTATGGTTTAAAGTTCATGTTTCTTGCCAAAGCTTGGGTCTCCTTGGTGTTGTTGCTGGCTGGGTGACCGGACATATTCTTGGTTCCAAGTCTCCAGAGACCCAATACAAAGGTCACAAATGCACAGGCTTGACGCTGTTGATTTTTGTCAATCTCCAGGTGCTGGTTGGGGTTCTCCACCCAAAACTAGAAAGCAAATACAGGTGGTTGTGGAATTTGTTCCGCTATGTCGTTGGTTACACAACAATGATCCTTGGCATAGTAAACATCTTCAAAGGGTTTGATATATTGGAACCGCCAAACTGGTCGAAGTACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

314

Amino Acids

34.55

Weight (kDa)

9.61

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF568	PF04526	48 - 158	5.9e-18	Protein of unknown function (DUF568)
DUF2427	PF10348	178 - 266	8.6e-06	Domain of unknown function (DUF2427)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	461
AccB7I	CCANNNNNTGG	2 cut(s)	655, 784
AciI	CCGC	4 cut(s)	69, 302, 844, 917
AclWI	GGATC	1 cut(s)	865
AcsI	RAATTY	1 cut(s)	835
AfaI	GTAC	4 cut(s)	290, 502, 570, 935
AfiI	CCNNNNNNNGG	5 cut(s)	342, 406, 561, 655, 784
AgsI	TTSAA	1 cut(s)	895
AjnI	CCWGG	2 cut(s)	417, 777
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	2 cut(s)	219, 654
AluI	AGCT	2 cut(s)	219, 654
Alw26I	GTCTC	3 cut(s)	665, 713, 717
AlwI	GGATC	1 cut(s)	865
AlwNI	CAGNNNCTG	1 cut(s)	784
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	835
ArsI	GACNNNNNNTTYG	2 cut(s)	643, 675
Asp700I	GAANNNNTTC	2 cut(s)	533, 839
AspA2I	CCTAGG	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	397, 440, 617
AsuHPI	GGTGA	5 cut(s)	51, 241, 268, 316, 697
AvaII	GGWCC	2 cut(s)	397, 617
AvrII	CCTAGG	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	2 cut(s)	152, 348
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	3 cut(s)	96, 176, 335
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	419, 779
BcoDI	GTCTC	3 cut(s)	665, 713, 717
BfaI	CTAG	4 cut(s)	129, 341, 581, 809
BglI	GCCNNNNNGGC	1 cut(s)	593
BisI	GCNGC	1 cut(s)	117
BlnI	CCTAGG	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	419, 779
Bme18I	GGWCC	2 cut(s)	397, 617
BmgT120I	GGNCC	3 cut(s)	397, 440, 617
BmiI	GGNNCC	8 cut(s)	245, 272, 347, 463, 586, 618, 706, 915
BmrFI	CCNGG	2 cut(s)	419, 779
BpmI	CTGGAG	2 cut(s)	699, 761
BsaI	GGTCTC	2 cut(s)	665, 713
BsaJI	CCNNGG	6 cut(s)	159, 340, 465, 538, 664, 874
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	5 cut(s)	342, 406, 561, 655, 784
Bse1I	ACTGG	3 cut(s)	502, 620, 929
BseBI	CCWGG	2 cut(s)	419, 779
BseDI	CCNNGG	6 cut(s)	159, 340, 465, 538, 664, 874
BseGI	GGATG	2 cut(s)	83, 438
BseLI	CCNNNNNNNGG	5 cut(s)	342, 406, 561, 655, 784
BseNI	ACTGG	3 cut(s)	502, 620, 929
BseXI	GCAGC	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	681
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	480, 690
BslFI	GGGAC	2 cut(s)	505, 556
BslI	CCNNNNNNNGG	5 cut(s)	342, 406, 561, 655, 784
BsmAI	GTCTC	3 cut(s)	665, 713, 717
BsmFI	GGGAC	2 cut(s)	505, 556
BsnI	GGCC	1 cut(s)	441
Bso31I	GGTCTC	2 cut(s)	665, 713
Bsp1286I	GDGCHC	2 cut(s)	152, 348
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	870
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	4 cut(s)	69, 302, 844, 917
BspANI	GGCC	1 cut(s)	441
BspLI	GGNNCC	8 cut(s)	245, 272, 347, 463, 586, 618, 706, 915
BspPI	GGATC	1 cut(s)	865
BspT107I	GGYRCC	1 cut(s)	461
BspTNI	GGTCTC	2 cut(s)	665, 713
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	3 cut(s)	502, 620, 929
BssECI	CCNNGG	6 cut(s)	159, 340, 465, 538, 664, 874
BssMI	GATC	1 cut(s)	870
BssT1I	CCWWGG	6 cut(s)	159, 340, 465, 538, 664, 874
Bst2UI	CCWGG	2 cut(s)	419, 779
Bst4CI	ACNGT	2 cut(s)	367, 556
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	6 cut(s)	79, 152, 156, 337, 424, 679
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	538
BstEII	GGTNACC	1 cut(s)	685
BstF5I	GGATG	2 cut(s)	83, 438
BstKTI	GATC	1 cut(s)	873
BstMAI	GTCTC	3 cut(s)	665, 713, 717
BstMBI	GATC	1 cut(s)	870
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 593
BstNI	CCWGG	2 cut(s)	419, 779
BstNSI	RCATGY	2 cut(s)	123, 426
BstPI	GGTNACC	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	417, 777
BstV1I	GCAGC	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	83, 438
Cac8I	GCNNGC	6 cut(s)	79, 152, 156, 337, 424, 679
CaiI	CAGNNNCTG	1 cut(s)	784
Cfr13I	GGNCC	3 cut(s)	397, 440, 617
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	4 cut(s)	289, 501, 569, 934
CviAII	CATG	6 cut(s)	120, 190, 406, 423, 539, 638
CviQI	GTAC	4 cut(s)	289, 501, 569, 934
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	872
DpnII	GATC	1 cut(s)	870
DraI	TTTAAA	1 cut(s)	631
Eco130I	CCWWGG	6 cut(s)	159, 340, 465, 538, 664, 874
Eco24I	GRGCYC	2 cut(s)	152, 348
Eco31I	GGTCTC	2 cut(s)	665, 713
Eco47I	GGWCC	2 cut(s)	397, 617
Eco91I	GGTNACC	1 cut(s)	685
EcoO109I	RGGNCCY	2 cut(s)	397, 440
EcoO65I	GGTNACC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	417, 777
EcoT14I	CCWWGG	6 cut(s)	159, 340, 465, 538, 664, 874
EcoT38I	GRGCYC	2 cut(s)	152, 348
ErhI	CCWWGG	6 cut(s)	159, 340, 465, 538, 664, 874
FaeI	CATG	6 cut(s)	123, 193, 409, 426, 542, 641
FaqI	GGGAC	2 cut(s)	505, 556
FatI	CATG	6 cut(s)	119, 189, 405, 422, 538, 637
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	70, 445
FriOI	GRGCYC	2 cut(s)	152, 348
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	4 cut(s)	129, 341, 581, 809
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	685
GsuI	CTGGAG	2 cut(s)	699, 761
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	2 cut(s)	480, 690
HgaI	GACGC	1 cut(s)	763
Hin1II	CATG	6 cut(s)	123, 193, 409, 426, 542, 641
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	2 cut(s)	186, 370
HpaII	CCGG	2 cut(s)	480, 690
HphI	GGTGA	5 cut(s)	51, 241, 268, 316, 697
Hpy166II	GTNNAC	7 cut(s)	199, 289, 291, 503, 569, 886, 936
Hpy188I	TCNGA	3 cut(s)	174, 432, 600
Hpy188III	TCNNGA	3 cut(s)	214, 308, 716
Hpy8I	GTNNAC	7 cut(s)	199, 289, 291, 503, 569, 886, 936
HpyAV	CCTTC	2 cut(s)	64, 388
HpyCH4III	ACNGT	2 cut(s)	367, 556
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	4 cut(s)	116, 405, 426, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 593
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	6 cut(s)	123, 193, 409, 426, 542, 641
Kzo9I	GATC	1 cut(s)	870
LmnI	GCTCC	4 cut(s)	235, 262, 351, 584
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	4 cut(s)	129, 341, 581, 809
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	6 cut(s)	122, 358, 409, 685, 734, 857
MalI	GATC	1 cut(s)	872
MboI	GATC	1 cut(s)	870
MboII	GAAGA	3 cut(s)	42, 526, 883
MhlI	GDGCHC	2 cut(s)	152, 348
MluCI	AATT	2 cut(s)	92, 835
MnlI	CCTC	4 cut(s)	257, 284, 410, 588
MroXI	GAANNNNTTC	2 cut(s)	533, 839
MseI	TTAA	2 cut(s)	450, 630
MslI	CAYNNNNRTG	3 cut(s)	365, 431, 866
MspI	CCGG	2 cut(s)	480, 690
MspR9I	CCNGG	2 cut(s)	419, 779
MvaI	CCWGG	2 cut(s)	419, 779
MwoI	GCNNNNNNNGC	2 cut(s)	164, 593
NcoI	CCATGG	1 cut(s)	538
NdeII	GATC	1 cut(s)	870
NlaIII	CATG	6 cut(s)	123, 193, 409, 426, 542, 641
NlaIV	GGNNCC	8 cut(s)	245, 272, 347, 463, 586, 618, 706, 915
NmuCI	GTSAC	3 cut(s)	358, 685, 734
NspI	RCATGY	2 cut(s)	123, 426
OliI	CACNNNNGTG	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	426
PdmI	GAANNNNTTC	2 cut(s)	533, 839
PfeI	GAWTC	2 cut(s)	186, 370
PflMI	CCANNNNNTGG	2 cut(s)	655, 784
PkrI	GCNGC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	417, 777
PspEI	GGTNACC	1 cut(s)	685
PspFI	CCCAGC	1 cut(s)	681
PspGI	CCWGG	2 cut(s)	417, 777
PspN4I	GGNNCC	8 cut(s)	245, 272, 347, 463, 586, 618, 706, 915
PspPI	GGNCC	3 cut(s)	397, 440, 617
PspPPI	RGGWCCY	1 cut(s)	397
PsrI	GAACNNNNNNTAC	2 cut(s)	115, 147
PstNI	CAGNNNCTG	1 cut(s)	784
RsaI	GTAC	4 cut(s)	290, 502, 570, 935
RsaNI	GTAC	4 cut(s)	289, 501, 569, 934
RseI	CAYNNNNRTG	3 cut(s)	365, 431, 866
SaqAI	TTAA	2 cut(s)	450, 630
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	870
Sau96I	GGNCC	3 cut(s)	397, 440, 617
ScrFI	CCNGG	2 cut(s)	419, 779
SduI	GDGCHC	2 cut(s)	152, 348
SinI	GGWCC	2 cut(s)	397, 617
SmiMI	CAYNNNNRTG	3 cut(s)	365, 431, 866
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	2 cut(s)	92, 835
SsiI	CCGC	4 cut(s)	69, 302, 844, 917
SspMI	CTAG	4 cut(s)	129, 341, 581, 809
StyD4I	CCNGG	2 cut(s)	417, 777
StyI	CCWWGG	6 cut(s)	159, 340, 465, 538, 664, 874
TaaI	ACNGT	2 cut(s)	367, 556
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	4 cut(s)	229, 256, 489, 929
TasI	AATT	2 cut(s)	92, 835
TatI	WGTACW	3 cut(s)	288, 568, 933
TfiI	GAWTC	2 cut(s)	186, 370
Tru1I	TTAA	2 cut(s)	450, 630
Tru9I	TTAA	2 cut(s)	450, 630
TseFI	GTSAC	3 cut(s)	358, 685, 734
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	3 cut(s)	358, 685, 734
TspDTI	ATGAA	2 cut(s)	542, 626
TspGWI	ACGGA	1 cut(s)	406
Van91I	CCANNNNNTGG	2 cut(s)	655, 784
VpaK11BI	GGWCC	2 cut(s)	397, 617
XapI	RAATTY	1 cut(s)	835
XceI	RCATGY	2 cut(s)	123, 426
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 785
XmaJI	CCTAGG	1 cut(s)	340
XmnI	GAANNNNTTC	2 cut(s)	533, 839
XspI	CTAG	4 cut(s)	129, 341, 581, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.