Rroxscaffold_2G00136730

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002816
Physical Location & Seq
Forward (+)
74392648 .. 74397346
4699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136730.1

Sequence Viewer

Length: 849 bp
ATGGCAGCTTGCAAGTGGAAGTGTCGGCAACAAGAAGAAGACGGTGGATCCGGATCATTTCCCGGACACGGGAGTCAACATGCTAGATATAGATTGGGATGCAAAGAATCACCGGAAGCAAAGCCCGAGAGACCAGCGAGCGGGGGCTCGAAAAGCCGATTCAACAACCACCTTGCATTCGGAGAAACCCTAGTTGGCGATTCAAGATGGGCGGCGTGGGCGGTAAACCCTAGTTCCAAGGGTATGGTGGGTTCACAAGCCTTGGTTGCTTTTCAAGGAAGCGATGGAACCATGGCTGTTTATTCATCGCCTATAAAAAGGTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTTTCCACGGTTTACGAAAACGAAGAAATCACTATCTTTGCCACCCTAGGGCTCCCAAACAATGTTACAACCGGTTTGGTCCGGCATGGTTCTACGTTCACCTTTCTTGTCAAATCTTGGGTTCTCTTGGTGGAATTGCTGGCTCGATCACCGAGGCTTATGCTGGGTCACAAGTCTTCGGGGATCGAATACAAAGGTCACAAATGCATAGGCATCACGCCGATGAGTCTTGCCATAGTCCAGGTGTTAGTGGGTTCCTTTTGCGGCCTACACCGGATCACAAGTATAGGCGGTTCGGAATTTGTTCCACTATGCCCTTACACTGCAATTATCCTTGGCATAGTAAACATCTTCAAAGGGTTTGATATATTGGAACCGCCAAAGTCGTGGAGGTATGCCTTCATGGGGATTCTCACCGCATTGGTGTTTCTTGGTGTAGTAGGGGCAGCGTTCACCCACCGGAACAACAAGAGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

282

Amino Acids

30.69

Weight (kDa)

9.33

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 82 - 146 1.5e-12 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 363
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 7 cut(s) 141, 212, 221, 633, 660, 746, 786
AclWI GGATC 5 cut(s) 42, 55, 61, 560, 653
AcsI RAATTY 1 cut(s) 668
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 5 cut(s) 68, 69, 140, 417, 774
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 4 cut(s) 163, 204, 275, 724
AjnI CCWGG 1 cut(s) 609
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 5 cut(s) 42, 55, 61, 560, 653
Ama87I CYCGRG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 2 cut(s) 5, 815
ApoI RAATTY 1 cut(s) 668
AsiGI ACCGGT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 672
AspA2I CCTAGG 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 5 cut(s) 102, 460, 510, 775, 814
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 448
AvrII CCTAGG 1 cut(s) 415
BamHI GGATCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 149, 423
BbsI GAAGAC 2 cut(s) 45, 537
BbvI GCAGC 2 cut(s) 17, 827
BccI CCATC 2 cut(s) 201, 278
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 1 cut(s) 611
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 4 cut(s) 84, 191, 231, 416
BisI GCNGC 4 cut(s) 6, 213, 634, 816
BlnI CCTAGG 1 cut(s) 415
BlsI GCNGC 4 cut(s) 7, 214, 635, 817
Bme1390I CCNGG 2 cut(s) 63, 611
Bme18I GGWCC 1 cut(s) 448
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 6 cut(s) 49, 289, 347, 422, 625, 744
BmrFI CCNGG 2 cut(s) 63, 611
BmsI GCATC 2 cut(s) 89, 591
BpiI GAAGAC 2 cut(s) 45, 537
BpuMI CCSGG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 7 cut(s) 237, 261, 291, 375, 415, 521, 703
BsaWI WCCGGW 5 cut(s) 50, 112, 440, 642, 828
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 69, 140, 417, 774
Bse118I RCCGGY 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 52
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 1 cut(s) 611
BseDI CCNNGG 7 cut(s) 237, 261, 291, 375, 415, 521, 703
BseGI GGATG 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 52
BseLI CCNNNNNNNGG 5 cut(s) 68, 69, 140, 417, 774
BseXI GCAGC 2 cut(s) 17, 827
BseYI CCCAGC 1 cut(s) 532
BshFI GGCC 1 cut(s) 636
BshTI ACCGGT 1 cut(s) 440
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 7 cut(s) 51, 63, 113, 441, 451, 643, 829
BslI CCNNNNNNNGG 5 cut(s) 68, 69, 140, 417, 774
BsmAI GTCTC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 636
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 149, 423
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 5 cut(s) 47, 53, 515, 552, 645
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 7 cut(s) 141, 212, 221, 633, 660, 746, 786
BspANI GGCC 1 cut(s) 636
BspEI TCCGGA 1 cut(s) 50
BspLI GGNNCC 6 cut(s) 49, 289, 347, 422, 625, 744
BspPI GGATC 5 cut(s) 42, 55, 61, 560, 653
BspTNI GGTCTC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 7 cut(s) 237, 261, 291, 375, 415, 521, 703
BssMI GATC 5 cut(s) 47, 53, 515, 552, 645
BssT1I CCWWGG 5 cut(s) 237, 261, 291, 415, 703
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 2 cut(s) 44, 379
BstC8I GCNNGC 3 cut(s) 10, 139, 510
BstDSI CCRYGG 2 cut(s) 291, 375
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 5 cut(s) 50, 56, 518, 555, 648
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 5 cut(s) 47, 53, 515, 552, 645
BstMWI GCNNNNNNNGC 3 cut(s) 153, 218, 266
BstNI CCWGG 1 cut(s) 611
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 61, 609
BstV1I GCAGC 2 cut(s) 17, 827
BstV2I GAAGAC 2 cut(s) 45, 537
BstX2I RGATCY 1 cut(s) 47
BstXI CCANNNNNNTGG 2 cut(s) 244, 756
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 1 cut(s) 636
BtgI CCRYGG 2 cut(s) 291, 375
BtgZI GCGATG 2 cut(s) 291, 297
BtsCI GGATG 1 cut(s) 104
BtsI GCAGTG 1 cut(s) 690
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 10, 139, 510
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 322
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 4 cut(s) 80, 292, 455, 772
CviQI GTAC 1 cut(s) 322
DpnI GATC 5 cut(s) 49, 55, 517, 554, 647
DpnII GATC 5 cut(s) 47, 53, 515, 552, 645
DrdI GACNNNNNNGTC 1 cut(s) 72
DseDI GACNNNNNNGTC 1 cut(s) 72
Eco130I CCWWGG 5 cut(s) 237, 261, 291, 415, 703
Eco24I GRGCYC 2 cut(s) 149, 423
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 609
EcoT14I CCWWGG 5 cut(s) 237, 261, 291, 415, 703
EcoT22I ATGCAT 1 cut(s) 578
EcoT38I GRGCYC 2 cut(s) 149, 423
ErhI CCWWGG 5 cut(s) 237, 261, 291, 415, 703
FaeI CATG 4 cut(s) 83, 295, 458, 775
FatI CATG 4 cut(s) 79, 291, 454, 771
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 4 cut(s) 6, 213, 634, 816
FokI GGATG 1 cut(s) 111
FriOI GRGCYC 2 cut(s) 149, 423
Fsp4HI GCNGC 4 cut(s) 6, 213, 634, 816
FspBI CTAG 4 cut(s) 84, 191, 231, 416
GluI GCNGC 4 cut(s) 6, 213, 634, 816
GsaI CCCAGC 1 cut(s) 536
HaeIII GGCC 1 cut(s) 636
HapII CCGG 7 cut(s) 51, 63, 113, 441, 451, 643, 829
Hin1II CATG 4 cut(s) 83, 295, 458, 775
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HinfI GANTC 6 cut(s) 73, 107, 159, 200, 595, 778
HpaII CCGG 7 cut(s) 51, 63, 113, 441, 451, 643, 829
HphI GGTGA 5 cut(s) 102, 460, 510, 775, 814
Hpy166II GTNNAC 8 cut(s) 77, 226, 254, 364, 382, 468, 715, 822
Hpy188I TCNGA 2 cut(s) 182, 667
Hpy188III TCNNGA 2 cut(s) 51, 204
Hpy8I GTNNAC 8 cut(s) 77, 226, 254, 364, 382, 468, 715, 822
HpyAV CCTTC 1 cut(s) 778
HpyCH4III ACNGT 2 cut(s) 44, 379
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 5 cut(s) 12, 102, 176, 576, 695
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 218, 266
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 4 cut(s) 83, 295, 458, 775
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 5 cut(s) 47, 53, 515, 552, 645
LmnI GCTCC 2 cut(s) 337, 426
Lsp1109I GCAGC 2 cut(s) 17, 827
LweI GCATC 2 cut(s) 89, 591
MaeI CTAG 4 cut(s) 84, 191, 231, 416
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 3 cut(s) 433, 536, 566
MalI GATC 5 cut(s) 49, 55, 517, 554, 647
MbiI CCGCTC 1 cut(s) 141
MboI GATC 5 cut(s) 47, 53, 515, 552, 645
MboII GAAGA 5 cut(s) 47, 50, 404, 537, 712
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 149, 423
MluCI AATT 3 cut(s) 503, 668, 696
MlyI GAGTC 2 cut(s) 82, 604
MnlI CCTC 4 cut(s) 359, 516, 753, 834
Mph1103I ATGCAT 1 cut(s) 578
MroI TCCGGA 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 672
MseI TTAA 1 cut(s) 847
MslI CAYNNNNRTG 1 cut(s) 590
MspI CCGG 7 cut(s) 51, 63, 113, 441, 451, 643, 829
MspR9I CCNGG 2 cut(s) 63, 611
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 1 cut(s) 611
MwoI GCNNNNNNNGC 3 cut(s) 153, 218, 266
NciI CCSGG 1 cut(s) 63
NcoI CCATGG 1 cut(s) 291
NdeII GATC 5 cut(s) 47, 53, 515, 552, 645
NlaIII CATG 4 cut(s) 83, 295, 458, 775
NlaIV GGNNCC 6 cut(s) 49, 289, 347, 422, 625, 744
NmuCI GTSAC 2 cut(s) 536, 566
NsiI ATGCAT 1 cut(s) 578
NspI RCATGY 1 cut(s) 83
PctI GAATGC 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 4 cut(s) 107, 159, 200, 778
PfoI TCCNGGA 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 4 cut(s) 7, 214, 635, 817
PleI GAGTC 2 cut(s) 81, 603
PpsI GAGTC 2 cut(s) 81, 603
Psp6I CCWGG 1 cut(s) 609
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 6 cut(s) 49, 289, 347, 422, 625, 744
PspPI GGNCC 1 cut(s) 448
PsrI GAACNNNNNNTAC 4 cut(s) 235, 267, 646, 678
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 1 cut(s) 847
SatI GCNGC 4 cut(s) 6, 213, 634, 816
Sau3AI GATC 5 cut(s) 47, 53, 515, 552, 645
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 2 cut(s) 82, 604
ScrFI CCNGG 2 cut(s) 63, 611
SduI GDGCHC 2 cut(s) 149, 423
SfaNI GCATC 2 cut(s) 89, 591
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 590
Sse9I AATT 3 cut(s) 503, 668, 696
SsiI CCGC 7 cut(s) 141, 212, 221, 633, 660, 746, 786
SspMI CTAG 4 cut(s) 84, 191, 231, 416
StyD4I CCNGG 2 cut(s) 61, 609
StyI CCWWGG 5 cut(s) 237, 261, 291, 415, 703
TaaI ACNGT 2 cut(s) 44, 379
TaiI ACGT 1 cut(s) 467
TaqI TCGA 3 cut(s) 149, 514, 555
TasI AATT 3 cut(s) 503, 668, 696
TauI GCSGC 2 cut(s) 215, 636
TfiI GAWTC 4 cut(s) 107, 159, 200, 778
Tru1I TTAA 1 cut(s) 847
Tru9I TTAA 1 cut(s) 847
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 2 cut(s) 536, 566
TseI GCWGC 2 cut(s) 5, 815
Tsp45I GTSAC 2 cut(s) 536, 566
TspDTI ATGAA 2 cut(s) 294, 760
TspRI CASTG 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 448
XapI RAATTY 1 cut(s) 668
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmaJI CCTAGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 4 cut(s) 84, 191, 231, 416
Zsp2I ATGCAT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.