RchiOBHm_Chr2g0158541

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002816
Physical Location & Seq
Forward (+)
74809642 .. 74810328
687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52722

Sequence Viewer

Length: 687 bp
ATGGGCTACGTGAGCGATAAACTAGAACTCAAGGGTATGGTGGGTTCACAAGCCTTGGTTGCTTTTCAAAGAAGCGATGGAACCATGGCTGTTTATTCATCGCCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCTTGTCTACACCTTGTCCGCGGTTTACGAAAACGATTTCTTCGTTATCTTTGCCACCCTAGGGATCCCAAACAATGTTACAACTGTGAATCAATTATGGCAACAAGGACCTCTGCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCAGGCAAAGTCGTAGCAACCGGTACACATCACTCTTCGGTATCCACCATGAAAATCGCCCATGGGATAATGAACACCATTAGTTGGGGTATACTCATGCCAATCGGAGCTATCGTGGCTTGGAATTTCAAAGGGTTTGGTCCAGCATGGTTCTACGTTCACGTTTCTTGCCAAGTTTTGGGTTCTCTTGGTGGAATTGCTGGCTCGGTCACCGGACTCATGCTGGGTCACAAGTCTTCAGGGATCGAATACAAAGGTCACAAATGCATAGGCATCACGCTTATGAGTCTTGCCACAGTCCAGGTGCTAGCTAGGTTCCTTTTGTGGCCTAAAACCGGATCACAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

228

Amino Acids

24.45

Weight (kDa)

9.06

Isoelectric Point (pI)

20.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 13 - 111 1.5e-26 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 2 cut(s) 420, 514
AccI GTMKAC 2 cut(s) 156, 427
AccII CGCG 1 cut(s) 170
AciI CCGC 2 cut(s) 168, 170
AclWI GGATC 4 cut(s) 208, 221, 587, 682
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 5 cut(s) 210, 266, 420, 514, 671
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 2 cut(s) 68, 466
AjnI CCWGG 2 cut(s) 277, 636
AluBI AGCT 3 cut(s) 114, 446, 647
AluI AGCT 3 cut(s) 114, 446, 647
AlwI GGATC 4 cut(s) 208, 221, 587, 682
AoxI GGCC 2 cut(s) 298, 662
ApoI RAATTY 1 cut(s) 460
AsiGI ACCGGT 1 cut(s) 356
AspA2I CCTAGG 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 257, 299, 476
AsuHPI GGTGA 1 cut(s) 538
AsuNHI GCTAGC 1 cut(s) 643
AvaII GGWCC 2 cut(s) 257, 476
AvrII CCTAGG 1 cut(s) 208
BamHI GGATCC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 564
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 279, 638
BciVI GTATCC 1 cut(s) 388
BfaI CTAG 4 cut(s) 23, 209, 644, 648
BfuI GTATCC 1 cut(s) 388
BlnI CCTAGG 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 279, 638
Bme18I GGWCC 2 cut(s) 257, 476
BmgT120I GGNCC 3 cut(s) 257, 299, 476
BmiI GGNNCC 5 cut(s) 82, 140, 215, 322, 653
BmrFI CCNGG 2 cut(s) 279, 638
BmsI GCATC 1 cut(s) 618
BmtI GCTAGC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 10
BsaJI CCNNGG 6 cut(s) 54, 84, 168, 208, 324, 397
BsaWI WCCGGW 3 cut(s) 356, 548, 671
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 5 cut(s) 210, 266, 420, 514, 671
Bse118I RCCGGY 1 cut(s) 356
BseBI CCWGG 2 cut(s) 279, 638
BseDI CCNNGG 6 cut(s) 54, 84, 168, 208, 324, 397
BseLI CCNNNNNNNGG 5 cut(s) 210, 266, 420, 514, 671
BseYI CCCAGC 1 cut(s) 559
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 2 cut(s) 300, 664
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 356
BsiSI CCGG 3 cut(s) 357, 549, 672
BslI CCNNNNNNNGG 5 cut(s) 210, 266, 420, 514, 671
BsnI GGCC 2 cut(s) 300, 664
Bsp143I GATC 3 cut(s) 213, 579, 674
Bsp19I CCATGG 2 cut(s) 84, 397
BspACI CCGC 2 cut(s) 168, 170
BspANI GGCC 2 cut(s) 300, 664
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 5 cut(s) 82, 140, 215, 322, 653
BspOI GCTAGC 1 cut(s) 647
BspPI GGATC 4 cut(s) 208, 221, 587, 682
BspT107I GGYRCC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 6 cut(s) 54, 84, 168, 208, 324, 397
BssMI GATC 3 cut(s) 213, 579, 674
BssNAI GTATAC 1 cut(s) 428
BssT1I CCWWGG 5 cut(s) 54, 84, 208, 324, 397
Bst1107I GTATAC 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 279, 638
Bst4CI ACNGT 2 cut(s) 235, 634
Bst6I CTCTTC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 538, 645
BstDSI CCRYGG 3 cut(s) 84, 168, 397
BstEII GGTNACC 1 cut(s) 544
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 3 cut(s) 216, 582, 677
BstMBI GATC 3 cut(s) 213, 579, 674
BstMWI GCNNNNNNNGC 3 cut(s) 12, 59, 452
BstNI CCWGG 2 cut(s) 279, 638
BstPI GGTNACC 1 cut(s) 544
BstSCI CCNGG 2 cut(s) 277, 636
BstUI CGCG 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 428
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 2 cut(s) 300, 664
BtgI CCRYGG 3 cut(s) 84, 168, 397
BtgZI GCGATG 2 cut(s) 84, 90
Cac8I GCNNGC 2 cut(s) 538, 645
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 257, 299, 476
Cfr42I CCGCGG 1 cut(s) 171
CsiI ACCWGGT 1 cut(s) 277
Csp6I GTAC 1 cut(s) 360
CspAI ACCGGT 1 cut(s) 356
CviAII CATG 7 cut(s) 85, 266, 385, 398, 433, 483, 556
CviQI GTAC 1 cut(s) 360
DpnI GATC 3 cut(s) 215, 581, 676
DpnII GATC 3 cut(s) 213, 579, 674
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 5 cut(s) 54, 84, 208, 324, 397
Eco47I GGWCC 2 cut(s) 257, 476
Eco57I CTGAAG 1 cut(s) 558
Eco91I GGTNACC 1 cut(s) 544
EcoO109I RGGNCCY 2 cut(s) 257, 299
EcoO65I GGTNACC 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 277, 636
EcoT14I CCWWGG 5 cut(s) 54, 84, 208, 324, 397
EcoT22I ATGCAT 1 cut(s) 605
ErhI CCWWGG 5 cut(s) 54, 84, 208, 324, 397
FaeI CATG 7 cut(s) 88, 269, 388, 401, 436, 486, 559
FatI CATG 7 cut(s) 84, 265, 384, 397, 432, 482, 555
FblI GTMKAC 2 cut(s) 156, 427
FspBI CTAG 4 cut(s) 23, 209, 644, 648
GsaI CCCAGC 1 cut(s) 563
HaeIII GGCC 2 cut(s) 300, 664
HapII CCGG 3 cut(s) 357, 549, 672
Hin1II CATG 7 cut(s) 88, 269, 388, 401, 436, 486, 559
HinfI GANTC 3 cut(s) 238, 552, 622
HpaII CCGG 3 cut(s) 357, 549, 672
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 6 cut(s) 47, 157, 175, 362, 428, 496
Hpy188I TCNGA 1 cut(s) 443
Hpy8I GTNNAC 6 cut(s) 47, 157, 175, 362, 428, 496
HpyCH4III ACNGT 2 cut(s) 235, 634
HpyCH4IV ACGT 3 cut(s) 9, 492, 498
HpyCH4V TGCA 3 cut(s) 265, 286, 603
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 59, 452
HpySE526I ACGT 3 cut(s) 9, 492, 498
Hsp92II CATG 7 cut(s) 88, 269, 388, 401, 436, 486, 559
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 3 cut(s) 213, 579, 674
LmnI GCTCC 2 cut(s) 130, 443
LweI GCATC 1 cut(s) 618
MabI ACCWGGT 1 cut(s) 277
MaeI CTAG 4 cut(s) 23, 209, 644, 648
MaeII ACGT 3 cut(s) 9, 492, 498
MaeIII GTNAC 5 cut(s) 226, 269, 544, 563, 593
MalI GATC 3 cut(s) 215, 581, 676
MboI GATC 3 cut(s) 213, 579, 674
MboII GAAGA 3 cut(s) 181, 363, 564
MflI RGATCY 1 cut(s) 213
MluCI AATT 3 cut(s) 242, 460, 531
MlyI GAGTC 2 cut(s) 546, 631
MnlI CCTC 2 cut(s) 152, 270
Mph1103I ATGCAT 1 cut(s) 605
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 3 cut(s) 357, 549, 672
MspR9I CCNGG 2 cut(s) 279, 638
MvaI CCWGG 2 cut(s) 279, 638
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 12, 59, 452
NcoI CCATGG 2 cut(s) 84, 397
NdeII GATC 3 cut(s) 213, 579, 674
NheI GCTAGC 1 cut(s) 643
NlaIII CATG 7 cut(s) 88, 269, 388, 401, 436, 486, 559
NlaIV GGNNCC 5 cut(s) 82, 140, 215, 322, 653
NmuCI GTSAC 3 cut(s) 544, 563, 593
NsiI ATGCAT 1 cut(s) 605
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 447
PfeI GAWTC 1 cut(s) 238
PflMI CCANNNNNTGG 2 cut(s) 420, 514
PinAI ACCGGT 1 cut(s) 356
PleI GAGTC 2 cut(s) 546, 630
PpsI GAGTC 2 cut(s) 546, 630
Ppu21I YACGTR 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 277, 636
PspEI GGTNACC 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 2 cut(s) 277, 636
PspN4I GGNNCC 5 cut(s) 82, 140, 215, 322, 653
PspPI GGNCC 3 cut(s) 257, 299, 476
PspPPI RGGWCCY 1 cut(s) 257
PsrI GAACNNNNNNTAC 2 cut(s) 28, 60
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 617
SacII CCGCGG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 309
Sau3AI GATC 3 cut(s) 213, 579, 674
Sau96I GGNCC 3 cut(s) 257, 299, 476
SchI GAGTC 2 cut(s) 546, 631
ScrFI CCNGG 2 cut(s) 279, 638
SexAI ACCWGGT 1 cut(s) 277
SfaNI GCATC 1 cut(s) 618
Sfr303I CCGCGG 1 cut(s) 171
SgrBI CCGCGG 1 cut(s) 171
SinI GGWCC 2 cut(s) 257, 476
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 3 cut(s) 242, 460, 531
SsiI CCGC 2 cut(s) 168, 170
SspMI CTAG 4 cut(s) 23, 209, 644, 648
StyD4I CCNGG 2 cut(s) 277, 636
StyI CCWWGG 5 cut(s) 54, 84, 208, 324, 397
TaaI ACNGT 2 cut(s) 235, 634
TaiI ACGT 3 cut(s) 12, 495, 501
TaqI TCGA 2 cut(s) 290, 582
TaqII GACCGA 1 cut(s) 532
TasI AATT 3 cut(s) 242, 460, 531
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 3 cut(s) 544, 563, 593
Tsp45I GTSAC 3 cut(s) 544, 563, 593
TspDTI ATGAA 3 cut(s) 87, 401, 422
Van91I CCANNNNNTGG 2 cut(s) 420, 514
VpaK11BI GGWCC 2 cut(s) 257, 476
XapI RAATTY 1 cut(s) 460
XmaJI CCTAGG 1 cut(s) 208
XmiI GTMKAC 2 cut(s) 156, 427
XspI CTAG 4 cut(s) 23, 209, 644, 648
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.