Rh2AG193300

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002816
Physical Location & Seq
Forward (+)
19159803 .. 19161123
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG193300.1

Sequence Viewer

Length: 831 bp
ATGGCTAAGATTGTTCCTTCACTCTTCCTTCTGTCCCTCTTATTCACTTCTTCATTCTCAACCCTAACCGCACAAACCTGCTCAACCCACCAGTTCCCTAACCAAAAAACCTTTGCAGCATGTAATGATCTACCAGTCCTAAACTCCACTATTTACTGGAATTATTTCCCATCAAACGGAACAGTAGACCTTGCATTCAGAGAAACCCTAGTGGGCGATTCTAGATGGGCGGCGTGGGCGATAAACCCTAGTTCCAAGGGTATGGTGGGCTCGCAAGCCTTGGTCGCTTTTCAAAGAAGCGATGGAACTATGGCTGTTTATTCGTCGCCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTGTCCGCGGTTTACGAAAACAAAGAAATCACTATCTTTGCCACCCTAGGGCTCCCAAACAATATTACAACTGTGAATCAACTATGGCAACAAGGACCTCTGCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCCGGCAAAGTGGAAGCAACCGGCGCACATCACTCTGCGGTGTCCAGCATGAAAATCGCCCATGGGATAATGAACACCATTAGTTGGGGTATACTCATGCCAATTGGAGCTATCGTGGCTCGGAATTTCAAAGGGTTTGGTCCAGCATGGTTCTACATTCACGTTTTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGCTGGCTCAGTCACCGGACTTATGCTGGGTCACAAGTCTTCAGGGATCGAATACAAAGGTCACAAATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

276

Amino Acids

30.05

Weight (kDa)

8.4

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 88 - 186 1e-28 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 545
AccB7I CCANNNNNTGG 2 cut(s) 645, 738
AccI GTMKAC 3 cut(s) 186, 381, 652
AccII CGCG 1 cut(s) 395
AciI CCGC 5 cut(s) 69, 230, 393, 395, 599
AclWI GGATC 1 cut(s) 811
AcsI RAATTY 1 cut(s) 685
AcuI CTGAAG 1 cut(s) 782
AfiI CCNNNNNNNGG 5 cut(s) 176, 435, 491, 645, 738
AgsI TTSAA 2 cut(s) 293, 691
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 2 cut(s) 339, 671
AluI AGCT 2 cut(s) 339, 671
AlwI GGATC 1 cut(s) 811
AoxI GGCC 1 cut(s) 523
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 685
Asp700I GAANNNNTTC 1 cut(s) 164
AspA2I CCTAGG 1 cut(s) 433
AspLEI GCGC 1 cut(s) 587
AspS9I GGNCC 3 cut(s) 482, 524, 701
AsuHPI GGTGA 1 cut(s) 762
AvaII GGWCC 2 cut(s) 482, 701
AvrII CCTAGG 1 cut(s) 433
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 2 cut(s) 272, 441
BbsI GAAGAC 1 cut(s) 788
BbvI GCAGC 1 cut(s) 128
BccI CCATC 3 cut(s) 178, 219, 296
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 1 cut(s) 504
BfaI CTAG 4 cut(s) 209, 222, 249, 434
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 117, 231
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 2 cut(s) 118, 232
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 2 cut(s) 482, 701
BmgT120I GGNCC 3 cut(s) 482, 524, 701
BmiI GGNNCC 3 cut(s) 365, 440, 547
BmrFI CCNGG 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 788
BsaJI CCNNGG 6 cut(s) 255, 279, 393, 433, 549, 622
BsaWI WCCGGW 1 cut(s) 772
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 435, 491, 645, 738
Bse118I RCCGGY 1 cut(s) 581
Bse1I ACTGG 3 cut(s) 91, 134, 161
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 6 cut(s) 255, 279, 393, 433, 549, 622
BseLI CCNNNNNNNGG 5 cut(s) 176, 435, 491, 645, 738
BseMII CTCAG 1 cut(s) 779
BseNI ACTGG 3 cut(s) 91, 134, 161
BseXI GCAGC 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 783
Bsh1236I CGCG 1 cut(s) 395
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 1 cut(s) 545
BsiSI CCGG 3 cut(s) 564, 582, 773
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 5 cut(s) 176, 435, 491, 645, 738
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 272, 441
Bsp143I GATC 2 cut(s) 127, 803
Bsp19I CCATGG 1 cut(s) 622
BspACI CCGC 5 cut(s) 69, 230, 393, 395, 599
BspANI GGCC 1 cut(s) 525
BspCNI CTCAG 1 cut(s) 778
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 3 cut(s) 365, 440, 547
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 811
BspT107I GGYRCC 1 cut(s) 545
BsrFI RCCGGY 1 cut(s) 581
BsrI ACTGG 3 cut(s) 91, 134, 161
BssAI RCCGGY 1 cut(s) 581
BssECI CCNNGG 6 cut(s) 255, 279, 393, 433, 549, 622
BssMI GATC 2 cut(s) 127, 803
BssNAI GTATAC 1 cut(s) 653
BssT1I CCWWGG 5 cut(s) 255, 279, 433, 549, 622
Bst1107I GTATAC 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 184, 460
Bst6I CTCTTC 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 272, 276, 762
BstDEI CTNAG 2 cut(s) 6, 765
BstDSI CCRYGG 2 cut(s) 393, 622
BstFNI CGCG 1 cut(s) 395
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 2 cut(s) 130, 806
BstMBI GATC 2 cut(s) 127, 803
BstMWI GCNNNNNNNGC 4 cut(s) 236, 284, 584, 677
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 502
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 788
BstXI CCANNNNNNTGG 1 cut(s) 262
BstZ17I GTATAC 1 cut(s) 653
BsuRI GGCC 1 cut(s) 525
BtgI CCRYGG 2 cut(s) 393, 622
BtgZI GCGATG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 272, 276, 762
CfoI GCGC 1 cut(s) 587
Cfr10I RCCGGY 1 cut(s) 581
Cfr13I GGNCC 3 cut(s) 482, 524, 701
Cfr42I CCGCGG 1 cut(s) 396
CsiI ACCWGGT 1 cut(s) 502
CviAII CATG 6 cut(s) 120, 491, 610, 623, 658, 708
DdeI CTNAG 2 cut(s) 6, 765
DpnI GATC 2 cut(s) 129, 805
DpnII GATC 2 cut(s) 127, 803
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 5 cut(s) 255, 279, 433, 549, 622
Eco24I GRGCYC 2 cut(s) 272, 441
Eco47I GGWCC 2 cut(s) 482, 701
Eco57I CTGAAG 1 cut(s) 782
EcoO109I RGGNCCY 2 cut(s) 482, 524
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 5 cut(s) 255, 279, 433, 549, 622
EcoT22I ATGCAT 1 cut(s) 829
EcoT38I GRGCYC 2 cut(s) 272, 441
ErhI CCWWGG 5 cut(s) 255, 279, 433, 549, 622
FaeI CATG 6 cut(s) 123, 494, 613, 626, 661, 711
FaqI GGGAC 1 cut(s) 19
FatI CATG 6 cut(s) 119, 490, 609, 622, 657, 707
FblI GTMKAC 3 cut(s) 186, 381, 652
Fnu4HI GCNGC 2 cut(s) 117, 231
FriOI GRGCYC 2 cut(s) 272, 441
Fsp4HI GCNGC 2 cut(s) 117, 231
FspBI CTAG 4 cut(s) 209, 222, 249, 434
GlaI GCGC 1 cut(s) 586
GluI GCNGC 2 cut(s) 117, 231
GsaI CCCAGC 1 cut(s) 787
HaeIII GGCC 1 cut(s) 525
HapII CCGG 3 cut(s) 564, 582, 773
HhaI GCGC 1 cut(s) 587
Hin1II CATG 6 cut(s) 123, 494, 613, 626, 661, 711
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HinfI GANTC 2 cut(s) 218, 463
HpaII CCGG 3 cut(s) 564, 582, 773
HphI GGTGA 1 cut(s) 762
Hpy166II GTNNAC 4 cut(s) 187, 382, 400, 653
Hpy188I TCNGA 2 cut(s) 200, 684
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 4 cut(s) 187, 382, 400, 653
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 27, 38
HpyCH4III ACNGT 2 cut(s) 184, 460
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 5 cut(s) 116, 194, 490, 511, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 284, 584, 677
HpyF3I CTNAG 2 cut(s) 6, 765
HpySE526I ACGT 1 cut(s) 723
Hsp92II CATG 6 cut(s) 123, 494, 613, 626, 661, 711
HspAI GCGC 1 cut(s) 585
KspI CCGCGG 1 cut(s) 396
Kzo9I GATC 2 cut(s) 127, 803
LmnI GCTCC 3 cut(s) 355, 444, 668
Lsp1109I GCAGC 1 cut(s) 128
MabI ACCWGGT 1 cut(s) 502
MaeI CTAG 4 cut(s) 209, 222, 249, 434
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 4 cut(s) 494, 768, 787, 817
MalI GATC 2 cut(s) 129, 805
MboI GATC 2 cut(s) 127, 803
MboII GAAGA 3 cut(s) 16, 42, 788
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 272, 441
MluCI AATT 4 cut(s) 160, 663, 685, 755
MnlI CCTC 3 cut(s) 47, 377, 495
Mph1103I ATGCAT 1 cut(s) 829
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 3 cut(s) 564, 582, 773
MspR9I CCNGG 1 cut(s) 504
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 194
MvaI CCWGG 1 cut(s) 504
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 4 cut(s) 236, 284, 584, 677
NcoI CCATGG 1 cut(s) 622
NdeII GATC 2 cut(s) 127, 803
NlaIII CATG 6 cut(s) 123, 494, 613, 626, 661, 711
NlaIV GGNNCC 3 cut(s) 365, 440, 547
NmuCI GTSAC 3 cut(s) 768, 787, 817
NsiI ATGCAT 1 cut(s) 829
NspI RCATGY 1 cut(s) 123
PctI GAATGC 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 218, 463
PflMI CCANNNNNTGG 2 cut(s) 645, 738
PkrI GCNGC 2 cut(s) 118, 232
PpuMI RGGWCCY 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 3 cut(s) 365, 440, 547
PspPI GGNCC 3 cut(s) 482, 524, 701
PspPPI RGGWCCY 1 cut(s) 482
SacII CCGCGG 1 cut(s) 396
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 2 cut(s) 117, 231
Sau3AI GATC 2 cut(s) 127, 803
Sau96I GGNCC 3 cut(s) 482, 524, 701
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 2 cut(s) 272, 441
SexAI ACCWGGT 1 cut(s) 502
Sfr303I CCGCGG 1 cut(s) 396
SgrBI CCGCGG 1 cut(s) 396
SinI GGWCC 2 cut(s) 482, 701
Sse9I AATT 4 cut(s) 160, 663, 685, 755
SsiI CCGC 5 cut(s) 69, 230, 393, 395, 599
SspI AATATT 1 cut(s) 451
SspMI CTAG 4 cut(s) 209, 222, 249, 434
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 5 cut(s) 255, 279, 433, 549, 622
TaaI ACNGT 2 cut(s) 184, 460
TaiI ACGT 1 cut(s) 726
TaqI TCGA 2 cut(s) 515, 806
TasI AATT 4 cut(s) 160, 663, 685, 755
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 2 cut(s) 218, 463
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 3 cut(s) 768, 787, 817
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 768, 787, 817
TspDTI ATGAA 3 cut(s) 42, 626, 647
TspGWI ACGGA 1 cut(s) 192
Van91I CCANNNNNTGG 2 cut(s) 645, 738
VpaK11BI GGWCC 2 cut(s) 482, 701
XapI RAATTY 1 cut(s) 685
XbaI TCTAGA 1 cut(s) 221
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XmaJI CCTAGG 1 cut(s) 433
XmiI GTMKAC 3 cut(s) 186, 381, 652
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 4 cut(s) 209, 222, 249, 434
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.