Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Reverse (-)

18167527 .. 18167883

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCACTCGATTTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCAGGCAAAGTCGAAGCAACCGGTACACATCACTCTTCGGTATCCACCATGAAAATCGCCCATGGGATAATGAACACCATTAGTTGGGGTATAGTCATGCCAATCGGAGCTATCGTGGCTCGGAATTTCAAAGGGTTTGGTCCAGCATGGTTTTGCGTTCACGTTTCTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGCTAGTTCGGTCACCGGACTTGTGCTGGGTCACAAGTCTTCAGGGATCGAATACAAGGGTCACAAATGCATAGGCATCACGCTGATGAGTCTTGCCATAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

118

Amino Acids

12.28

Weight (kDa)

9.41

Isoelectric Point (pI)

20.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	2 cut(s)	138, 232
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	138, 232
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	178
AsiGI	ACCGGT	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	17, 194
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	282
BciVI	GTATCC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	255, 355
BfuI	GTATCC	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	17, 194
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	42, 115
BsaWI	WCCGGW	2 cut(s)	74, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 232
Bse118I	RCCGGY	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	42, 115
BseLI	CCNNNNNNNGG	2 cut(s)	138, 232
BseYI	CCCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	38
BshTI	ACCGGT	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	75, 267
BslI	CCNNNNNNNGG	2 cut(s)	138, 232
BsnI	GGCC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	297
Bsp19I	CCATGG	1 cut(s)	115
BspANI	GGCC	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	42, 115
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	42, 115
Bst6I	CTCTTC	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	115
BstEII	GGTNACC	1 cut(s)	262
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstPI	GGTNACC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	17, 194
Csp6I	GTAC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	74
CviAII	CATG	4 cut(s)	103, 116, 151, 201
CviJI	RGCY	3 cut(s)	18, 164, 173
CviKI_1	RGCY	3 cut(s)	18, 164, 173
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	42, 115
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	276
Eco91I	GGTNACC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	262
EcoT14I	CCWWGG	2 cut(s)	42, 115
EcoT22I	ATGCAT	1 cut(s)	323
ErhI	CCWWGG	2 cut(s)	42, 115
FaeI	CATG	4 cut(s)	106, 119, 154, 204
FaiI	YATR	8 cut(s)	36, 104, 117, 146, 152, 202, 323, 350
FatI	CATG	4 cut(s)	102, 115, 150, 200
FspBI	CTAG	2 cut(s)	255, 355
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	2 cut(s)	75, 267
Hin1II	CATG	4 cut(s)	106, 119, 154, 204
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	75, 267
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	80, 214
Hpy188I	TCNGA	2 cut(s)	161, 177
Hpy8I	GTNNAC	2 cut(s)	80, 214
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	4, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	106, 119, 154, 204
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	6 cut(s)	42, 88, 210, 263, 279, 280
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	2 cut(s)	255, 355
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	262, 281, 311
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	2 cut(s)	81, 282
MluCI	AATT	2 cut(s)	178, 249
MlyI	GAGTC	1 cut(s)	349
Mph1103I	ATGCAT	1 cut(s)	323
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	75, 267
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	4 cut(s)	106, 119, 154, 204
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	3 cut(s)	262, 281, 311
NsiI	ATGCAT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PflMI	CCANNNNNTGG	2 cut(s)	138, 232
PinAI	ACCGGT	1 cut(s)	74
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspEI	GGTNACC	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	17, 194
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	2 cut(s)	17, 194
SchI	GAGTC	1 cut(s)	349
SetI	ASST	4 cut(s)	27, 44, 166, 219
SfaNI	GCATC	1 cut(s)	336
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	178, 249
SspMI	CTAG	2 cut(s)	255, 355
StyI	CCWWGG	2 cut(s)	42, 115
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	8, 66, 300
TaqII	GACCGA	1 cut(s)	250
TasI	AATT	2 cut(s)	178, 249
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	3 cut(s)	262, 281, 311
Tsp45I	GTSAC	3 cut(s)	262, 281, 311
TspDTI	ATGAA	2 cut(s)	119, 140
Van91I	CCANNNNNTGG	2 cut(s)	138, 232
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	178
XspI	CTAG	2 cut(s)	255, 355
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.