Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Forward (+)

69387084 .. 69387911

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG519600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTGTTTATTCATCGCCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCTTGTCTACACCTTGTCCGCGGTTTACGAAAACGATTTCTTCGTTATCTTTGCCACCCTAGGGCTCCCAAACAATGTTACAACTGTGAATCAATTATGGCAACAAGGACCTCTGCATGGTAACACACTAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCAGGCAAAGTCGTAGCAACCGGTACACATCACTCTTCGGTATCCACCATGAAAATCGCCCATGGGATAATGAACACCAGTAGTTGGGGTATACTCATGCCAATCGGAGCTATCGTGGCTTGGAATTTCAAAGGGTTTGGTCCAGCATGGTTCTACGTTCACGTTTCTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGCTGGCTCGGTCACCGGACTCATGCTGGGTCACAAGTCTTCAGGGATCGAATACAAAGGTCACAAATGCATAGGCATCACGCTGATGAGTCTTGCCACGGTCCAGGTGCTAGCTGGGTTCCTTTTGCGGCCTAAACCGGATCATAAGTATAGGCGGTTCTGGAATTTGCTCCACTATGCCCTTGGTTACACTGCAATTGTCCTGGGCATAGTAAACATCTTCAATGGGTTTGATATATTGGAACCGCCAAAGTCGTGGAGGTGTGCCTACATGGGGATTCTCGCTGCATTGATGTTTCTCGGTGTAGTAGGGGCAGCCCCACTGGAACAACAAGAGGACTCAAGCTGCGAAGACACAACTGGAACAAAGGGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

275

Amino Acids

29.71

Weight (kDa)

8.29

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF568	PF04526	7 - 83	2.8e-17	Protein of unknown function (DUF568)
Cytochrom_B561	PF03188	135 - 227	6.1e-07	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	2 cut(s)	336, 430
AccI	GTMKAC	2 cut(s)	72, 343
AccII	CGCG	1 cut(s)	86
AciI	CCGC	6 cut(s)	84, 86, 577, 604, 695, 822
AclWI	GGATC	2 cut(s)	503, 597
AcsI	RAATTY	2 cut(s)	376, 613
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	5 cut(s)	126, 182, 336, 430, 723
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	382, 673
AjnI	CCWGG	2 cut(s)	552, 651
AluBI	AGCT	4 cut(s)	30, 362, 563, 795
AluI	AGCT	4 cut(s)	30, 362, 563, 795
AlwI	GGATC	2 cut(s)	503, 597
AoxI	GGCC	2 cut(s)	214, 578
ApeKI	GCWGC	3 cut(s)	734, 764, 795
ApoI	RAATTY	2 cut(s)	376, 613
AsiGI	ACCGGT	1 cut(s)	272
AspA2I	CCTAGG	1 cut(s)	124
AspS9I	GGNCC	4 cut(s)	173, 215, 392, 550
AsuHPI	GGTGA	1 cut(s)	454
AsuNHI	GCTAGC	1 cut(s)	559
AvaII	GGWCC	3 cut(s)	173, 392, 550
AvrII	CCTAGG	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	2 cut(s)	480, 807
BbvI	GCAGC	3 cut(s)	721, 776, 782
BciT130I	CCWGG	2 cut(s)	554, 653
BciVI	GTATCC	1 cut(s)	304
BfaI	CTAG	3 cut(s)	125, 194, 560
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	4 cut(s)	578, 735, 765, 796
BlnI	CCTAGG	1 cut(s)	124
BlsI	GCNGC	4 cut(s)	579, 736, 766, 797
Bme1390I	CCNGG	2 cut(s)	554, 653
Bme18I	GGWCC	3 cut(s)	173, 392, 550
BmgT120I	GGNCC	4 cut(s)	173, 215, 392, 550
BmiI	GGNNCC	5 cut(s)	56, 131, 238, 569, 693
BmrFI	CCNGG	2 cut(s)	554, 653
BmsI	GCATC	1 cut(s)	534
BmtI	GCTAGC	1 cut(s)	563
BpiI	GAAGAC	2 cut(s)	480, 807
BpuEI	CTTGAG	1 cut(s)	775
BsaJI	CCNNGG	7 cut(s)	84, 124, 240, 313, 546, 631, 652
BsaWI	WCCGGW	3 cut(s)	272, 464, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	5 cut(s)	126, 182, 336, 430, 723
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	3 cut(s)	330, 777, 814
BseBI	CCWGG	2 cut(s)	554, 653
BseDI	CCNNGG	7 cut(s)	84, 124, 240, 313, 546, 631, 652
BseLI	CCNNNNNNNGG	5 cut(s)	126, 182, 336, 430, 723
BseNI	ACTGG	3 cut(s)	330, 777, 814
BseXI	GCAGC	3 cut(s)	721, 776, 782
BseYI	CCCAGC	2 cut(s)	475, 563
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	216, 580
BshNI	GGYRCC	1 cut(s)	236
BshTI	ACCGGT	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	273, 465, 587
BslI	CCNNNNNNNGG	5 cut(s)	126, 182, 336, 430, 723
BsnI	GGCC	2 cut(s)	216, 580
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	495, 589
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	6 cut(s)	84, 86, 577, 604, 695, 822
BspANI	GGCC	2 cut(s)	216, 580
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	5 cut(s)	56, 131, 238, 569, 693
BspOI	GCTAGC	1 cut(s)	563
BspPI	GGATC	2 cut(s)	503, 597
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	330, 777, 814
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	7 cut(s)	84, 124, 240, 313, 546, 631, 652
BssMI	GATC	2 cut(s)	495, 589
BssNAI	GTATAC	1 cut(s)	344
BssT1I	CCWWGG	4 cut(s)	124, 240, 313, 631
Bst1107I	GTATAC	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	554, 653
Bst4CI	ACNGT	2 cut(s)	151, 550
Bst6I	CTCTTC	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	454, 561
BstDSI	CCRYGG	3 cut(s)	84, 313, 546
BstEII	GGTNACC	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	498, 592
BstMBI	GATC	2 cut(s)	495, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	2 cut(s)	554, 653
BstPI	GGTNACC	1 cut(s)	460
BstSCI	CCNGG	2 cut(s)	552, 651
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	721, 776, 782
BstV2I	GAAGAC	2 cut(s)	480, 807
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstZ17I	GTATAC	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	216, 580
BtgI	CCRYGG	3 cut(s)	84, 313, 546
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	639, 770
Cac8I	GCNNGC	2 cut(s)	454, 561
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	4 cut(s)	173, 215, 392, 550
Cfr42I	CCGCGG	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	276
CspAI	ACCGGT	1 cut(s)	272
CviAII	CATG	7 cut(s)	182, 301, 314, 349, 399, 472, 721
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	2 cut(s)	497, 591
DpnII	GATC	2 cut(s)	495, 589
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco130I	CCWWGG	4 cut(s)	124, 240, 313, 631
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	3 cut(s)	173, 392, 550
Eco57I	CTGAAG	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	460
EcoO109I	RGGNCCY	2 cut(s)	173, 215
EcoO65I	GGTNACC	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	552, 651
EcoT14I	CCWWGG	4 cut(s)	124, 240, 313, 631
EcoT22I	ATGCAT	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	4 cut(s)	124, 240, 313, 631
FaeI	CATG	7 cut(s)	185, 304, 317, 352, 402, 475, 724
FatI	CATG	7 cut(s)	181, 300, 313, 348, 398, 471, 720
FblI	GTMKAC	2 cut(s)	72, 343
Fnu4HI	GCNGC	4 cut(s)	578, 735, 765, 796
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	578, 735, 765, 796
FspBI	CTAG	3 cut(s)	125, 194, 560
GluI	GCNGC	4 cut(s)	578, 735, 765, 796
GsaI	CCCAGC	2 cut(s)	479, 567
HaeIII	GGCC	2 cut(s)	216, 580
HapII	CCGG	3 cut(s)	273, 465, 587
Hin1II	CATG	7 cut(s)	185, 304, 317, 352, 402, 475, 724
HinfI	GANTC	5 cut(s)	154, 468, 538, 727, 788
HpaII	CCGG	3 cut(s)	273, 465, 587
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	6 cut(s)	73, 91, 278, 344, 412, 664
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	1 cut(s)	610
Hpy8I	GTNNAC	6 cut(s)	73, 91, 278, 344, 412, 664
HpyCH4III	ACNGT	2 cut(s)	151, 550
HpyCH4IV	ACGT	2 cut(s)	408, 414
HpyCH4V	TGCA	5 cut(s)	181, 202, 519, 644, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpySE526I	ACGT	2 cut(s)	408, 414
Hsp92II	CATG	7 cut(s)	185, 304, 317, 352, 402, 475, 724
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	495, 589
LmnI	GCTCC	4 cut(s)	46, 135, 359, 624
Lsp1109I	GCAGC	3 cut(s)	721, 776, 782
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	3 cut(s)	125, 194, 560
MaeII	ACGT	2 cut(s)	408, 414
MaeIII	GTNAC	6 cut(s)	142, 185, 460, 479, 509, 635
MalI	GATC	2 cut(s)	497, 591
MboI	GATC	2 cut(s)	495, 589
MboII	GAAGA	5 cut(s)	97, 279, 480, 661, 812
MfeI	CAATTG	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	5 cut(s)	158, 376, 447, 613, 645
MlyI	GAGTC	3 cut(s)	462, 547, 782
MnlI	CCTC	4 cut(s)	68, 186, 702, 778
Mph1103I	ATGCAT	1 cut(s)	521
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	3 cut(s)	273, 465, 587
MspR9I	CCNGG	2 cut(s)	554, 653
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	554, 653
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	2 cut(s)	495, 589
NheI	GCTAGC	1 cut(s)	559
NlaIII	CATG	7 cut(s)	185, 304, 317, 352, 402, 475, 724
NlaIV	GGNNCC	5 cut(s)	56, 131, 238, 569, 693
NmuCI	GTSAC	3 cut(s)	460, 479, 509
NsiI	ATGCAT	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 363
PfeI	GAWTC	2 cut(s)	154, 727
PflMI	CCANNNNNTGG	2 cut(s)	336, 430
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	579, 736, 766, 797
PleI	GAGTC	3 cut(s)	462, 546, 782
PpsI	GAGTC	3 cut(s)	462, 546, 782
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	552, 651
PspEI	GGTNACC	1 cut(s)	460
PspFI	CCCAGC	2 cut(s)	475, 563
PspGI	CCWGG	2 cut(s)	552, 651
PspN4I	GGNNCC	5 cut(s)	56, 131, 238, 569, 693
PspPI	GGNCC	4 cut(s)	173, 215, 392, 550
PspPPI	RGGWCCY	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	590, 622
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	533
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	4 cut(s)	578, 735, 765, 796
Sau3AI	GATC	2 cut(s)	495, 589
Sau96I	GGNCC	4 cut(s)	173, 215, 392, 550
SchI	GAGTC	3 cut(s)	462, 547, 782
ScrFI	CCNGG	2 cut(s)	554, 653
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	534
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	3 cut(s)	173, 392, 550
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	5 cut(s)	158, 376, 447, 613, 645
SsiI	CCGC	6 cut(s)	84, 86, 577, 604, 695, 822
SspMI	CTAG	3 cut(s)	125, 194, 560
StyD4I	CCNGG	2 cut(s)	552, 651
StyI	CCWWGG	4 cut(s)	124, 240, 313, 631
TaaI	ACNGT	2 cut(s)	151, 550
TaiI	ACGT	2 cut(s)	411, 417
TaqI	TCGA	2 cut(s)	206, 498
TaqII	GACCGA	1 cut(s)	448
TasI	AATT	5 cut(s)	158, 376, 447, 613, 645
TauI	GCSGC	1 cut(s)	580
TfiI	GAWTC	2 cut(s)	154, 727
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	646, 777
TseFI	GTSAC	3 cut(s)	460, 479, 509
TseI	GCWGC	3 cut(s)	734, 764, 795
Tsp45I	GTSAC	3 cut(s)	460, 479, 509
TspDTI	ATGAA	2 cut(s)	317, 338
TspRI	CASTG	2 cut(s)	646, 777
Van91I	CCANNNNNTGG	2 cut(s)	336, 430
VpaK11BI	GGWCC	3 cut(s)	173, 392, 550
XapI	RAATTY	2 cut(s)	376, 613
XcmI	CCANNNNNNNNNTGG	2 cut(s)	560, 629
XmaJI	CCTAGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	72, 343
XspI	CTAG	3 cut(s)	125, 194, 560
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.