Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005896.1

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Reverse (-)

2183 .. 3080

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005896.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgggctacgtgagcgataaactggaactcaagggtatggtgggttcacaagccttggttgcttttcaaagaagcgatggaaccatggctgtttattcatcgcctataaaaaactacgacactcacttggagcaagggaacctctcctttcttgtctacaccttgtccgcggtttacgaaaacgatttcttcgttatctttgccaccctagggatcccaaacaatgttacaactgtgaatcaattatggcaacaaggacctctgcatggtaacacaccaggtatgcactcgatgtcaggccctaaccttaaatcctatggcaccttggattttctttcaggcaaagtcgtagcaaccggtacacatcactcttcggtatccaccatgaaaatcgcccatgggataatgaacaccattagttggggtatactcatgccaatcggagctatcgtggcttggaatttcaaagggtttggtccagcatggtcttgccaaattttgggttctcttggtggaattgctggctcggtcaccggactcatgctgggtcacaagtcttcagggatcgaatacaaaggttccttttgtggcctaaaaccggatcacaagtataggcggttctggaatttgttccactatgcccttggttacactgcaattgtcctgggcatagtaaacatcttcaacgggtttgatatattggaaccgccaaagtcgtggaggtgtgcctacatggggattctcactgcattgatgtttctcggtgtagtaggggaagccccactggaacaacaagaagactcaagctgcgaagacacaactggaacaaagggcggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

279

Amino Acids

30.14

Weight (kDa)

6.74

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AccB7I	CCANNNNNTGG	2 cut(s)	420, 499
AccI	GTMKAC	2 cut(s)	156, 427
AccII	CGCG	1 cut(s)	170
AciI	CCGC	5 cut(s)	168, 170, 616, 707, 834
AclWI	GGATC	4 cut(s)	208, 221, 572, 609
AcsI	RAATTY	3 cut(s)	460, 495, 625
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	6 cut(s)	210, 266, 420, 499, 598, 735
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	68, 466, 685
AjnI	CCWGG	2 cut(s)	277, 663
AluBI	AGCT	2 cut(s)	446, 807
AluI	AGCT	2 cut(s)	446, 807
AlwI	GGATC	4 cut(s)	208, 221, 572, 609
AoxI	GGCC	2 cut(s)	298, 589
ApeKI	GCWGC	1 cut(s)	807
ApoI	RAATTY	3 cut(s)	460, 495, 625
AsiGI	ACCGGT	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	629
AspA2I	CCTAGG	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	257, 299, 476
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	257, 476
AvrII	CCTAGG	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	320
BbsI	GAAGAC	3 cut(s)	549, 804, 819
BbvI	GCAGC	1 cut(s)	794
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	279, 665
BciVI	GTATCC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	808
BlnI	CCTAGG	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	809
Bme1390I	CCNGG	2 cut(s)	279, 665
Bme18I	GGWCC	2 cut(s)	257, 476
BmgT120I	GGNCC	3 cut(s)	257, 299, 476
BmiI	GGNNCC	6 cut(s)	82, 140, 215, 322, 580, 705
BmrFI	CCNGG	2 cut(s)	279, 665
BpiI	GAAGAC	3 cut(s)	549, 804, 819
BpuEI	CTTGAG	2 cut(s)	14, 787
BsaAI	YACGTR	1 cut(s)	10
BsaJI	CCNNGG	8 cut(s)	54, 84, 168, 208, 324, 397, 643, 664
BsaWI	WCCGGW	3 cut(s)	356, 533, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	6 cut(s)	210, 266, 420, 499, 598, 735
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	27, 789, 826
BseBI	CCWGG	2 cut(s)	279, 665
BseDI	CCNNGG	8 cut(s)	54, 84, 168, 208, 324, 397, 643, 664
BseLI	CCNNNNNNNGG	6 cut(s)	210, 266, 420, 499, 598, 735
BseNI	ACTGG	3 cut(s)	27, 789, 826
BseXI	GCAGC	1 cut(s)	794
BseYI	CCCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	300, 591
BshNI	GGYRCC	1 cut(s)	320
BshTI	ACCGGT	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	357, 534, 599
BslI	CCNNNNNNNGG	6 cut(s)	210, 266, 420, 499, 598, 735
BsnI	GGCC	2 cut(s)	300, 591
Bsp143I	GATC	3 cut(s)	213, 564, 601
Bsp19I	CCATGG	2 cut(s)	84, 397
BspACI	CCGC	5 cut(s)	168, 170, 616, 707, 834
BspANI	GGCC	2 cut(s)	300, 591
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	6 cut(s)	82, 140, 215, 322, 580, 705
BspPI	GGATC	4 cut(s)	208, 221, 572, 609
BspT107I	GGYRCC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	3 cut(s)	27, 789, 826
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	8 cut(s)	54, 84, 168, 208, 324, 397, 643, 664
BssMI	GATC	3 cut(s)	213, 564, 601
BssNAI	GTATAC	1 cut(s)	428
BssT1I	CCWWGG	6 cut(s)	54, 84, 208, 324, 397, 643
Bst1107I	GTATAC	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	279, 665
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	523
BstDSI	CCRYGG	3 cut(s)	84, 168, 397
BstEII	GGTNACC	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	3 cut(s)	216, 567, 604
BstMBI	GATC	3 cut(s)	213, 564, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 59, 452
BstNI	CCWGG	2 cut(s)	279, 665
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	277, 663
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	794
BstV2I	GAAGAC	3 cut(s)	549, 804, 819
BstX2I	RGATCY	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	213
BstZ17I	GTATAC	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	300, 591
BtgI	CCRYGG	3 cut(s)	84, 168, 397
BtgZI	GCGATG	2 cut(s)	84, 90
BtsI	GCAGTG	2 cut(s)	651, 744
BtsIMutI	CAGTG	3 cut(s)	651, 744, 782
Cac8I	GCNNGC	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	257, 299, 476
Cfr42I	CCGCGG	1 cut(s)	171
CsiI	ACCWGGT	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	360
CspAI	ACCGGT	1 cut(s)	356
CviAII	CATG	8 cut(s)	85, 266, 385, 398, 433, 483, 541, 733
CviQI	GTAC	1 cut(s)	360
DpnI	GATC	3 cut(s)	215, 566, 603
DpnII	GATC	3 cut(s)	213, 564, 601
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	6 cut(s)	54, 84, 208, 324, 397, 643
Eco47I	GGWCC	2 cut(s)	257, 476
Eco57I	CTGAAG	1 cut(s)	543
Eco91I	GGTNACC	1 cut(s)	529
EcoO109I	RGGNCCY	2 cut(s)	257, 299
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	277, 663
EcoT14I	CCWWGG	6 cut(s)	54, 84, 208, 324, 397, 643
ErhI	CCWWGG	6 cut(s)	54, 84, 208, 324, 397, 643
FaeI	CATG	8 cut(s)	88, 269, 388, 401, 436, 486, 544, 736
FatI	CATG	8 cut(s)	84, 265, 384, 397, 432, 482, 540, 732
FblI	GTMKAC	2 cut(s)	156, 427
Fnu4HI	GCNGC	1 cut(s)	808
Fsp4HI	GCNGC	1 cut(s)	808
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	808
GsaI	CCCAGC	1 cut(s)	548
HaeIII	GGCC	2 cut(s)	300, 591
HapII	CCGG	3 cut(s)	357, 534, 599
Hin1II	CATG	8 cut(s)	88, 269, 388, 401, 436, 486, 544, 736
HinfI	GANTC	4 cut(s)	238, 537, 739, 800
HpaII	CCGG	3 cut(s)	357, 534, 599
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	6 cut(s)	47, 157, 175, 362, 428, 676
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	1 cut(s)	622
Hpy8I	GTNNAC	6 cut(s)	47, 157, 175, 362, 428, 676
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	265, 286, 656, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 59, 452
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	8 cut(s)	88, 269, 388, 401, 436, 486, 544, 736
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	213, 564, 601
LmnI	GCTCC	2 cut(s)	130, 443
Lsp1109I	GCAGC	1 cut(s)	794
MabI	ACCWGGT	1 cut(s)	277
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	5 cut(s)	226, 269, 529, 548, 647
MalI	GATC	3 cut(s)	215, 566, 603
MboI	GATC	3 cut(s)	213, 564, 601
MboII	GAAGA	6 cut(s)	181, 363, 549, 673, 809, 824
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	6 cut(s)	242, 460, 495, 516, 625, 657
MlyI	GAGTC	2 cut(s)	531, 794
MnlI	CCTC	3 cut(s)	152, 270, 714
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	3 cut(s)	357, 534, 599
MspR9I	CCNGG	2 cut(s)	279, 665
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	2 cut(s)	279, 665
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	12, 59, 452
NcoI	CCATGG	2 cut(s)	84, 397
NdeII	GATC	3 cut(s)	213, 564, 601
NlaIII	CATG	8 cut(s)	88, 269, 388, 401, 436, 486, 544, 736
NlaIV	GGNNCC	6 cut(s)	82, 140, 215, 322, 580, 705
NmuCI	GTSAC	2 cut(s)	529, 548
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 447
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	238, 739
PflMI	CCANNNNNTGG	2 cut(s)	420, 499
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	809
PleI	GAGTC	2 cut(s)	531, 794
PpsI	GAGTC	2 cut(s)	531, 794
Ppu21I	YACGTR	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	277, 663
PspEI	GGTNACC	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	277, 663
PspN4I	GGNNCC	6 cut(s)	82, 140, 215, 322, 580, 705
PspPI	GGNCC	3 cut(s)	257, 299, 476
PspPPI	RGGWCCY	1 cut(s)	257
PsrI	GAACNNNNNNTAC	4 cut(s)	28, 60, 602, 634
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SacII	CCGCGG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	808
Sau3AI	GATC	3 cut(s)	213, 564, 601
Sau96I	GGNCC	3 cut(s)	257, 299, 476
SchI	GAGTC	2 cut(s)	531, 794
ScrFI	CCNGG	2 cut(s)	279, 665
SexAI	ACCWGGT	1 cut(s)	277
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	257, 476
SmlI	CTYRAG	2 cut(s)	29, 802
SmoI	CTYRAG	2 cut(s)	29, 802
Sse9I	AATT	6 cut(s)	242, 460, 495, 516, 625, 657
SsiI	CCGC	5 cut(s)	168, 170, 616, 707, 834
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	277, 663
StyI	CCWWGG	6 cut(s)	54, 84, 208, 324, 397, 643
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	290, 567
TaqII	GACCGA	1 cut(s)	517
TasI	AATT	6 cut(s)	242, 460, 495, 516, 625, 657
TfiI	GAWTC	2 cut(s)	238, 739
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	3 cut(s)	658, 751, 789
TseFI	GTSAC	2 cut(s)	529, 548
TseI	GCWGC	1 cut(s)	807
Tsp45I	GTSAC	2 cut(s)	529, 548
TspDTI	ATGAA	3 cut(s)	87, 401, 422
TspRI	CASTG	3 cut(s)	658, 751, 789
Van91I	CCANNNNNTGG	2 cut(s)	420, 499
VpaK11BI	GGWCC	2 cut(s)	257, 476
XapI	RAATTY	3 cut(s)	460, 495, 625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmaJI	CCTAGG	1 cut(s)	208
XmiI	GTMKAC	2 cut(s)	156, 427
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.