Rh2CG198600

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002816
Physical Location & Seq
Forward (+)
18946243 .. 18946593
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG198600.1

Sequence Viewer

Length: 351 bp
ATGGTGGGCTTGCAAGCCTTGGTCGCTTTTCAAAGAAGCGATGGAACTATGGCTGTTTATTCGTCGCCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTGTCCGCGGTTTACGAAAACAAAGAAATCACTATCTTTGCCACCCTTGGGCTCCCAAACAATGTTACAACTGTGAATCAACTATTGCAACAAGGACCTCTGCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCCGGCAAAGTGGAAGCAACCGATACACATCACTCTGTGGTGTCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

116

Amino Acids

12.46

Weight (kDa)

5.86

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 1 - 99 1.1e-25 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AccI GTMKAC 1 cut(s) 120
AccII CGCG 1 cut(s) 134
AciI CCGC 3 cut(s) 132, 134, 345
AdeI CACNNNGTG 1 cut(s) 337
AfiI CCNNNNNNNGG 2 cut(s) 174, 230
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
AoxI GGCC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 221, 263
AvaII GGWCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 180
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 221, 263
BmiI GGNNCC 3 cut(s) 104, 179, 286
BmrFI CCNGG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 4 cut(s) 18, 132, 172, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 230
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 4 cut(s) 18, 132, 172, 288
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 174, 230
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 174, 230
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 180
BspACI CCGC 3 cut(s) 132, 134, 345
BspANI GGCC 1 cut(s) 264
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 3 cut(s) 104, 179, 286
BspT107I GGYRCC 1 cut(s) 284
BssECI CCNNGG 4 cut(s) 18, 132, 172, 288
BssT1I CCWWGG 3 cut(s) 18, 172, 288
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 11, 15
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstUI CGCG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 11, 15
Cfr13I GGNCC 2 cut(s) 221, 263
Cfr42I CCGCGG 1 cut(s) 135
CsiI ACCWGGT 1 cut(s) 241
CviAII CATG 2 cut(s) 230, 348
CviJI RGCY 6 cut(s) 9, 17, 53, 78, 178, 264
CviKI_1 RGCY 6 cut(s) 9, 17, 53, 78, 178, 264
DraIII CACNNNGTG 1 cut(s) 337
Eco130I CCWWGG 3 cut(s) 18, 172, 288
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 221
EcoO109I RGGNCCY 2 cut(s) 221, 263
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 3 cut(s) 18, 172, 288
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 3 cut(s) 18, 172, 288
FaeI CATG 2 cut(s) 233, 351
FaiI YATR 6 cut(s) 50, 71, 231, 248, 282, 349
FatI CATG 2 cut(s) 229, 347
FblI GTMKAC 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 303
Hin1II CATG 2 cut(s) 233, 351
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 121, 139
Hpy8I GTNNAC 2 cut(s) 121, 139
Hpy99I CGWCG 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 13, 214, 229, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 233, 351
KspI CCGCGG 1 cut(s) 135
LmnI GCTCC 2 cut(s) 94, 183
LpnPI CCDG 5 cut(s) 129, 228, 246, 255, 316
MabI ACCWGGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 190, 233
MhlI GDGCHC 1 cut(s) 180
MnlI CCTC 2 cut(s) 116, 234
MseI TTAA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 23
NlaIII CATG 2 cut(s) 233, 351
NlaIV GGNNCC 3 cut(s) 104, 179, 286
PfeI GAWTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 104, 179, 286
PspPI GGNCC 2 cut(s) 221, 263
PspPPI RGGWCCY 1 cut(s) 221
SacII CCGCGG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 273
Sau96I GGNCC 2 cut(s) 221, 263
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 80, 108, 128, 226, 247, 273, 290
SexAI ACCWGGT 1 cut(s) 241
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SinI GGWCC 1 cut(s) 221
SsiI CCGC 3 cut(s) 132, 134, 345
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 3 cut(s) 18, 172, 288
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 254
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.