MD15G1297900.v1.1

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002816
Physical Location & Seq
Forward (+)
28090061 .. 28090459
399 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1297900.v1.1.491

Sequence Viewer

Length: 399 bp
ATGGTAGGTTCACAAGCTATTATCGCTTGCAAAAGAACCGATGGAACTATGACTGTACATTCTTCACCAATTAAAAGTTACGGGATTCATTTGGAAAAAGGGAATCTCAGCTTCCCCTTGTACGATGTCTCCGCGGCTTACGAAAACAACCAAGTCATCATATTTGCCACCATAGTCCTTCCAAACAACGTCAGTGTTGTGCACCATGTCTGGCTGCAACGACCCATGTTCGGAAACAACCCCGGAATGCACTCGCTTTCCGGACCCAAAGTGCAATCCTTTGGGACCTTGGATCAAGAGGCTTATCAAGTTCCAGCACTTTTGGCAGTGGAGCCACAGATACATCATCCTTGGACAATACTACTTTTGGGAGGGATCATCTTGTTGGTAAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

133

Amino Acids

14.5

Weight (kDa)

6.64

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 1 - 98 2.4e-22 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 260
AciI CCGC 2 cut(s) 132, 134
AclWI GGATC 2 cut(s) 300, 383
AfaI GTAC 2 cut(s) 57, 122
AfiI CCNNNNNNNGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 17, 111
AluI AGCT 2 cut(s) 17, 111
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 133
Alw44I GTGCAC 1 cut(s) 200
AlwI GGATC 2 cut(s) 300, 383
Aor13HI TCCGGA 1 cut(s) 260
ApaLI GTGCAC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 263, 285
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 2 cut(s) 263, 285
BaeGI GKGCMC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 133
BisI GCNGC 2 cut(s) 135, 215
BlsI GCNGC 2 cut(s) 136, 216
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 2 cut(s) 263, 285
BmgT120I GGNCC 2 cut(s) 263, 285
BmiI GGNNCC 3 cut(s) 265, 286, 333
BmrFI CCNGG 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 132, 241, 288, 350
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseAI TCCGGA 1 cut(s) 260
BseDI CCNNGG 4 cut(s) 132, 241, 288, 350
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 2 cut(s) 243, 261
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 292, 375
BspACI CCGC 2 cut(s) 132, 134
BspCNI CTCAG 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 260
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 3 cut(s) 265, 286, 333
BspPI GGATC 2 cut(s) 300, 383
BsrGI TGTACA 1 cut(s) 55
BssECI CCNNGG 4 cut(s) 132, 241, 288, 350
BssMI GATC 2 cut(s) 292, 375
BssT1I CCWWGG 2 cut(s) 288, 350
Bst4CI ACNGT 1 cut(s) 55
BstAUI TGTACA 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 2 cut(s) 295, 378
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 292, 375
BstMWI GCNNNNNNNGC 2 cut(s) 23, 323
BstSCI CCNGG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 199, 333
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 263, 285
Cfr42I CCGCGG 1 cut(s) 135
Csp6I GTAC 2 cut(s) 56, 121
CviAII CATG 2 cut(s) 206, 226
CviJI RGCY 6 cut(s) 17, 111, 137, 214, 302, 334
CviKI_1 RGCY 6 cut(s) 17, 111, 137, 214, 302, 334
CviQI GTAC 2 cut(s) 56, 121
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 294, 377
DpnII GATC 2 cut(s) 292, 375
Eco130I CCWWGG 2 cut(s) 288, 350
Eco47I GGWCC 2 cut(s) 263, 285
EcoO109I RGGNCCY 1 cut(s) 285
EcoT14I CCWWGG 2 cut(s) 288, 350
ErhI CCWWGG 2 cut(s) 288, 350
FaeI CATG 2 cut(s) 209, 229
FaiI YATR 5 cut(s) 50, 161, 173, 207, 227
FaqI GGGAC 1 cut(s) 298
FatI CATG 2 cut(s) 205, 225
Fnu4HI GCNGC 2 cut(s) 135, 215
FokI GGATG 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 135, 215
GluI GCNGC 2 cut(s) 135, 215
HapII CCGG 2 cut(s) 243, 261
Hin1II CATG 2 cut(s) 209, 229
HinfI GANTC 2 cut(s) 85, 103
HpaII CCGG 2 cut(s) 243, 261
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 2 cut(s) 11, 202
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 2 cut(s) 261, 296
Hpy8I GTNNAC 2 cut(s) 11, 202
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 5 cut(s) 30, 202, 217, 250, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 323
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 2 cut(s) 209, 229
Kpn2I TCCGGA 1 cut(s) 260
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 2 cut(s) 292, 375
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 196, 256, 274, 327
Lsp1109I GCAGC 1 cut(s) 201
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 294, 377
MboI GATC 2 cut(s) 292, 375
MboII GAAGA 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 69
MnlI CCTC 2 cut(s) 292, 365
MroI TCCGGA 1 cut(s) 260
MseI TTAA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 2 cut(s) 243, 261
MspR9I CCNGG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 252
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 23, 323
NciI CCSGG 1 cut(s) 243
NdeII GATC 2 cut(s) 292, 375
NlaIII CATG 2 cut(s) 209, 229
NlaIV GGNNCC 3 cut(s) 265, 286, 333
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 85, 103
PkrI GCNGC 2 cut(s) 136, 216
PpuMI RGGWCCY 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 285
PspN4I GGNNCC 3 cut(s) 265, 286, 333
PspPI GGNCC 2 cut(s) 263, 285
PspPPI RGGWCCY 1 cut(s) 285
RsaI GTAC 2 cut(s) 57, 122
RsaNI GTAC 2 cut(s) 56, 121
SacII CCGCGG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 135, 215
Sau3AI GATC 2 cut(s) 292, 375
Sau96I GGNCC 2 cut(s) 263, 285
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 204
SetI ASST 5 cut(s) 10, 19, 113, 192, 290
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SinI GGWCC 2 cut(s) 263, 285
Sse9I AATT 1 cut(s) 69
SsiI CCGC 2 cut(s) 132, 134
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 2 cut(s) 288, 350
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 192
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 55
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 85, 103
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 199, 333
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 77
TspRI CASTG 2 cut(s) 199, 333
VneI GTGCAC 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 263, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.