AT5G48750

Cytochrome b561 and DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002816
Physical Location & Seq
Reverse (-)
19770052 .. 19770819
768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48750.1

Sequence Viewer

Length: 768 bp
ATGTTTCTGTCTTCGAGAACTATTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCCATGCTTTACTAGAGCAACAACCAATGAAGTTCAAGTTAGCTGCGACTCTCACAACTTCAACAATGGCAAACACTTCCGTTCATGTGTTGACCTTCCTGTGTTAGATTCGTTTCTACACTACAGTTACGTTCGAGAAACCGGAGTGCTTGAAGTTGCATATCGTCATACCAACATCGAGTCTTCTAGTTGGATTGCTTGGGGCATAAACCCGACGAGCAAAGGCATGATAGGTGCTCAAACACTTTTGGCTTACCGTAACTCCACGTCCGGTTTTATGCGTGCATATACTTCCTCAATAAATGGCTACACACCTATGCTTCAAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCTGAATATCTCAATAGAGAGATGACTATATTTGCCACTATGGTGTGGCCGTCTAACACAACCGTTGTCAATCATTTATGGCAAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCACGCCATGAGTGGAAATCATCTCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTCATGACCACTAAAGCAGCTAATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTGAATGCAGTGTGTTGGGGGATTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGGACCTACAAAGGACTGGACCCCACTTGGTTCTACATACTAATCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

255

Amino Acids

28.6

Weight (kDa)

8.59

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 95 - 195 4.4e-25 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 590
AciI CCGC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 464
AfaI GTAC 1 cut(s) 713
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 5 cut(s) 92, 118, 209, 380, 514
AhlI ACTAGT 2 cut(s) 634, 655
AjiI CACGTC 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 458
AluBI AGCT 3 cut(s) 99, 396, 617
AluI AGCT 3 cut(s) 99, 396, 617
Alw21I GWGCWC 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 590
AoxI GGCC 2 cut(s) 385, 464
ApeKI GCWGC 3 cut(s) 99, 614, 704
AspS9I GGNCC 4 cut(s) 386, 506, 720, 736
AsuHPI GGTGA 1 cut(s) 533
AvaII GGWCC 3 cut(s) 506, 720, 736
BbsI GAAGAC 2 cut(s) 3, 231
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 3 cut(s) 86, 626, 691
BceAI ACGGC 1 cut(s) 451
BcuI ACTAGT 2 cut(s) 634, 655
BfaI CTAG 4 cut(s) 69, 243, 635, 656
BfmI CTRYAG 1 cut(s) 178
BisI GCNGC 3 cut(s) 100, 615, 705
BlsI GCNGC 3 cut(s) 101, 616, 706
Bme18I GGWCC 3 cut(s) 506, 720, 736
BmgBI CACGTC 1 cut(s) 324
BmgT120I GGNCC 4 cut(s) 386, 506, 720, 736
BmiI GGNNCC 2 cut(s) 57, 738
BmsI GCATC 1 cut(s) 525
BpiI GAAGAC 2 cut(s) 3, 231
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 3 cut(s) 197, 326, 590
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bse1I ACTGG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 590
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 1 cut(s) 540
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 738
BseXI GCAGC 3 cut(s) 86, 626, 691
BshFI GGCC 2 cut(s) 387, 466
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 3 cut(s) 198, 327, 591
BsmI GAATGC 2 cut(s) 645, 667
BsnI GGCC 2 cut(s) 387, 466
Bsp1286I GDGCHC 1 cut(s) 295
Bsp13I TCCGGA 1 cut(s) 590
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 1 cut(s) 417
BspANI GGCC 2 cut(s) 387, 466
BspCNI CTCAG 1 cut(s) 384
BspEI TCCGGA 1 cut(s) 590
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 57, 738
BsrI ACTGG 1 cut(s) 738
BssECI CCNNGG 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 182, 314, 481, 506
BstC8I GCNNGC 2 cut(s) 339, 540
BstDEI CTNAG 1 cut(s) 392
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 540
BstMWI GCNNNNNNNGC 2 cut(s) 393, 535
BstNSI RCATGY 1 cut(s) 631
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 86, 626, 691
BstV2I GAAGAC 2 cut(s) 3, 231
BsuRI GGCC 2 cut(s) 387, 466
BtgI CCRYGG 1 cut(s) 567
BtrI CACGTC 1 cut(s) 324
BtsCI GGATG 1 cut(s) 540
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 2 cut(s) 339, 540
CciI TCATGA 1 cut(s) 600
Cfr13I GGNCC 4 cut(s) 386, 506, 720, 736
CpoI CGGWCCG 1 cut(s) 506
Csp6I GTAC 1 cut(s) 712
CspI CGGWCCG 1 cut(s) 506
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 567
Eco47I GGWCC 3 cut(s) 506, 720, 736
EcoO109I RGGNCCY 2 cut(s) 386, 720
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
Fnu4HI GCNGC 3 cut(s) 100, 615, 705
FokI GGATG 1 cut(s) 547
Fsp4HI GCNGC 3 cut(s) 100, 615, 705
FspBI CTAG 4 cut(s) 69, 243, 635, 656
GluI GCNGC 3 cut(s) 100, 615, 705
HaeIII GGCC 2 cut(s) 387, 466
HapII CCGG 3 cut(s) 198, 327, 591
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 104, 164, 236
HpaII CCGG 3 cut(s) 198, 327, 591
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 393
Hpy188III TCNNGA 5 cut(s) 15, 191, 380, 591, 601
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 4 cut(s) 161, 377, 508, 512
HpyCH4III ACNGT 4 cut(s) 182, 314, 481, 506
HpyCH4IV ACGT 2 cut(s) 186, 323
HpyCH4V TGCA 5 cut(s) 215, 341, 538, 665, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 393, 535
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 2 cut(s) 186, 323
Kpn2I TCCGGA 1 cut(s) 590
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 168, 211, 340, 604, 719
Lsp1109I GCAGC 3 cut(s) 86, 626, 691
LweI GCATC 1 cut(s) 525
MaeI CTAG 4 cut(s) 69, 243, 635, 656
MaeII ACGT 2 cut(s) 186, 323
MaeIII GTNAC 4 cut(s) 182, 314, 403, 630
MboII GAAGA 2 cut(s) 3, 231
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 1 cut(s) 574
MlyI GAGTC 2 cut(s) 98, 245
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 3 cut(s) 361, 399, 711
MroI TCCGGA 1 cut(s) 590
MslI CAYNNNNRTG 2 cut(s) 371, 458
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 3 cut(s) 198, 327, 591
Mva1269I GAATGC 2 cut(s) 645, 667
MwoI GCNNNNNNNGC 2 cut(s) 393, 535
NcoI CCATGG 1 cut(s) 567
NlaIV GGNNCC 2 cut(s) 57, 738
NspI RCATGY 1 cut(s) 631
OliI CACNNNNGTG 1 cut(s) 458
PagI TCATGA 1 cut(s) 600
PciI ACATGT 1 cut(s) 627
PctI GAATGC 2 cut(s) 645, 667
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 3 cut(s) 101, 616, 706
PleI GAGTC 2 cut(s) 98, 244
PpsI GAGTC 2 cut(s) 98, 244
PpuMI RGGWCCY 1 cut(s) 720
PscI ACATGT 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 720
PspN4I GGNNCC 2 cut(s) 57, 738
PspPI GGNCC 4 cut(s) 386, 506, 720, 736
PspPPI RGGWCCY 1 cut(s) 720
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
RseI CAYNNNNRTG 2 cut(s) 371, 458
Rsr2I CGGWCCG 1 cut(s) 506
RsrII CGGWCCG 1 cut(s) 506
SatI GCNGC 3 cut(s) 100, 615, 705
Sau96I GGNCC 4 cut(s) 386, 506, 720, 736
SchI GAGTC 2 cut(s) 98, 245
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 1 cut(s) 525
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 3 cut(s) 506, 720, 736
SmiMI CAYNNNNRTG 2 cut(s) 371, 458
SpeI ACTAGT 2 cut(s) 634, 655
Sse9I AATT 1 cut(s) 574
SsiI CCGC 1 cut(s) 417
SspMI CTAG 4 cut(s) 69, 243, 635, 656
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 4 cut(s) 182, 314, 481, 506
TaiI ACGT 2 cut(s) 189, 326
TaqI TCGA 3 cut(s) 14, 190, 234
TasI AATT 1 cut(s) 574
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 672
TseI GCWGC 3 cut(s) 99, 614, 704
TspDTI ATGAA 4 cut(s) 99, 129, 638, 673
TspGWI ACGGA 2 cut(s) 125, 498
TspRI CASTG 1 cut(s) 672
VpaK11BI GGWCC 3 cut(s) 506, 720, 736
XceI RCATGY 1 cut(s) 631
XcmI CCANNNNNNNNNTGG 2 cut(s) 574, 697
XspI CTAG 4 cut(s) 69, 243, 635, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.