Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Forward (+)

19023959 .. 19025281

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAATAAGATTGTTCCTTTACTCTTCCTTCTTTCCCTCTTATTCACTTCTTCATTCTCAACCCTAACCGCACAAACCTGCTCAACCCACCAGTTCCCTAACCACAAAACCTTTGCAGCATGTAATGATCTACCAGTCCTAAACTCCACTATTTACTGGAATTATTTCCCATCAAACGGAACAGTAGACCTTGCATTCAGAGAAACCCTAGTGGGCGATTCTAGATGGGCGGCGTGGGCGATAAACCCTAGTTCCAAGGGTATGGTGGGCTCGCAAGCCTTGGTCACTTTTCAAAGAAGTGATGGAACTATGGCTGTTTATTCGTCGCCTGTAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTGTCCGCGGTTTACGAAAACAAAGAAATCACTATCTTTGCCACCCTAAGGCTCCCAAACAATGTTACAACTGTGAATCAACTATGGCAACAAGGACCTCTGCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCCGGCAAAGTGGAAGCAACCGGTACACATCACTCTGCGGTGTCCAGCATGAAAATCGCCCATGGGATAATGAACACCATTAGTTGGGGTATACTCATGCCAATCGGAGCTATCGTGGCTCGGAATTTCAAAGGGTTTGGTCCAGCATGGTTCTACATTCACGTTTCTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGCTGGCTCAGTCACCGGACTTATGCTGGGTCACAAGTCTTCAGGGATCGAATACAAAGGTCACAAATGCATAGGCATCACGCTGATGAGTCTTGCCACAGTCCAGTTGCTAGCTGGGTTCCTTTTGCGGCCTAAACCGGATCACAAGTATAGGCGGTTCTGGAATTTGTTTCACTATGCCCTTGGTTACACTGCAATTGTCCTTGGCATAGTAAACATCTTCAAAGGGTTTGATATATTGGAACCGCCAAAGTCGTGGAGGTATGCCTACATGGGGATTCTCGCTGCGTTGGTGTTTCTCGGTGTAGTAGGGGCAGCGTTCACACACTGGAACAAGAAGAAAAATCAAGCTGCGAAGACACAACTGGAACAAAGGGAGGATGAAAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

383

Amino Acids

42.14

Weight (kDa)

9.42

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF568	PF04526	88 - 186	1.9e-27	Protein of unknown function (DUF568)
Cytochrom_B561	PF03188	235 - 330	1.1e-06	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	545
AccB7I	CCANNNNNTGG	2 cut(s)	645, 739
AccI	GTMKAC	3 cut(s)	186, 381, 652
AccII	CGCG	1 cut(s)	395
AciI	CCGC	8 cut(s)	69, 230, 393, 395, 599, 886, 913, 1004
AclI	AACGTT	1 cut(s)	1146
AclWI	GGATC	2 cut(s)	812, 906
AcsI	RAATTY	2 cut(s)	685, 922
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
AgeI	ACCGGT	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	293, 691, 982
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	339, 671, 872, 1109
AluI	AGCT	4 cut(s)	339, 671, 872, 1109
AlwI	GGATC	2 cut(s)	812, 906
AoxI	GGCC	2 cut(s)	523, 887
ApeKI	GCWGC	4 cut(s)	116, 1043, 1073, 1109
ApoI	RAATTY	2 cut(s)	685, 922
AsiGI	ACCGGT	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	482, 524, 701
AsuHPI	GGTGA	1 cut(s)	763
AsuNHI	GCTAGC	1 cut(s)	868
AvaII	GGWCC	2 cut(s)	482, 701
AxyI	CCTNAGG	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	789, 1121
BbvI	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BccI	CCATC	3 cut(s)	178, 219, 296
BcgI	CGANNNNNNTGC	2 cut(s)	598, 632
BciT130I	CCWGG	1 cut(s)	504
BfaI	CTAG	4 cut(s)	209, 222, 249, 869
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
BlsI	GCNGC	6 cut(s)	118, 232, 888, 1045, 1075, 1111
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	2 cut(s)	482, 701
BmgT120I	GGNCC	3 cut(s)	482, 524, 701
BmiI	GGNNCC	5 cut(s)	365, 440, 547, 878, 1002
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	843
BmtI	GCTAGC	1 cut(s)	872
BpiI	GAAGAC	2 cut(s)	789, 1121
BsaJI	CCNNGG	7 cut(s)	255, 279, 393, 549, 622, 940, 961
BsaWI	WCCGGW	3 cut(s)	581, 773, 895
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	6 cut(s)	91, 134, 161, 862, 1091, 1128
Bse21I	CCTNAGG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	7 cut(s)	255, 279, 393, 549, 622, 940, 961
BseGI	GGATG	1 cut(s)	1144
BseLI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	6 cut(s)	91, 134, 161, 862, 1091, 1128
BseXI	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BseYI	CCCAGC	2 cut(s)	784, 872
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	525, 889
BshNI	GGYRCC	1 cut(s)	545
BshTI	ACCGGT	1 cut(s)	581
BsiSI	CCGG	4 cut(s)	564, 582, 774, 896
BslI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	525, 889
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	3 cut(s)	127, 804, 898
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	8 cut(s)	69, 230, 393, 395, 599, 886, 913, 1004
BspANI	GGCC	2 cut(s)	525, 889
BspCNI	CTCAG	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	5 cut(s)	365, 440, 547, 878, 1002
BspMI	ACCTGC	1 cut(s)	86
BspOI	GCTAGC	1 cut(s)	872
BspPI	GGATC	2 cut(s)	812, 906
BspT107I	GGYRCC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	6 cut(s)	91, 134, 161, 862, 1091, 1128
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	7 cut(s)	255, 279, 393, 549, 622, 940, 961
BssMI	GATC	3 cut(s)	127, 804, 898
BssNAI	GTATAC	1 cut(s)	653
BssT1I	CCWWGG	6 cut(s)	255, 279, 549, 622, 940, 961
Bst1107I	GTATAC	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	184, 460, 859
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	4 cut(s)	272, 276, 763, 870
BstDEI	CTNAG	2 cut(s)	434, 766
BstDSI	CCRYGG	2 cut(s)	393, 622
BstF5I	GGATG	1 cut(s)	1144
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	3 cut(s)	130, 807, 901
BstMBI	GATC	3 cut(s)	127, 804, 898
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 677
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	502
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BstV2I	GAAGAC	2 cut(s)	789, 1121
BstXI	CCANNNNNNTGG	2 cut(s)	262, 1014
BstZ17I	GTATAC	1 cut(s)	653
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	525, 889
BtgI	CCRYGG	2 cut(s)	393, 622
BtsCI	GGATG	1 cut(s)	1144
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	2 cut(s)	948, 1084
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	4 cut(s)	272, 276, 763, 870
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	3 cut(s)	482, 524, 701
Cfr42I	CCGCGG	1 cut(s)	396
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	585
CspAI	ACCGGT	1 cut(s)	581
CviAII	CATG	7 cut(s)	120, 491, 610, 623, 658, 708, 1030
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	2 cut(s)	434, 766
DpnI	GATC	3 cut(s)	129, 806, 900
DpnII	GATC	3 cut(s)	127, 804, 898
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	6 cut(s)	255, 279, 549, 622, 940, 961
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	482, 701
Eco57I	CTGAAG	1 cut(s)	783
Eco81I	CCTNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	2 cut(s)	482, 524
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	6 cut(s)	255, 279, 549, 622, 940, 961
EcoT22I	ATGCAT	1 cut(s)	830
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	6 cut(s)	255, 279, 549, 622, 940, 961
FaeI	CATG	7 cut(s)	123, 494, 613, 626, 661, 711, 1033
FatI	CATG	7 cut(s)	119, 490, 609, 622, 657, 707, 1029
FblI	GTMKAC	3 cut(s)	186, 381, 652
Fnu4HI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
FspBI	CTAG	4 cut(s)	209, 222, 249, 869
GluI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
GsaI	CCCAGC	2 cut(s)	788, 876
HaeIII	GGCC	2 cut(s)	525, 889
HapII	CCGG	4 cut(s)	564, 582, 774, 896
Hin1II	CATG	7 cut(s)	123, 494, 613, 626, 661, 711, 1033
HinfI	GANTC	4 cut(s)	218, 463, 847, 1036
HpaII	CCGG	4 cut(s)	564, 582, 774, 896
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	7 cut(s)	187, 382, 400, 587, 653, 973, 1080
Hpy188I	TCNGA	3 cut(s)	200, 668, 684
Hpy188III	TCNNGA	2 cut(s)	222, 919
Hpy8I	GTNNAC	7 cut(s)	187, 382, 400, 587, 653, 973, 1080
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	3 cut(s)	184, 460, 859
HpyCH4IV	ACGT	2 cut(s)	723, 1146
HpyCH4V	TGCA	6 cut(s)	116, 194, 490, 511, 828, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 677
HpyF3I	CTNAG	2 cut(s)	434, 766
HpySE526I	ACGT	2 cut(s)	723, 1146
Hsp92II	CATG	7 cut(s)	123, 494, 613, 626, 661, 711, 1033
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	127, 804, 898
LmnI	GCTCC	3 cut(s)	355, 444, 668
Lsp1109I	GCAGC	4 cut(s)	128, 1030, 1085, 1096
LweI	GCATC	1 cut(s)	843
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	4 cut(s)	209, 222, 249, 869
MaeII	ACGT	2 cut(s)	723, 1146
MaeIII	GTNAC	7 cut(s)	283, 451, 494, 769, 788, 818, 944
MalI	GATC	3 cut(s)	129, 806, 900
MboI	GATC	3 cut(s)	127, 804, 898
MboII	GAAGA	6 cut(s)	16, 42, 789, 970, 1108, 1126
MfeI	CAATTG	1 cut(s)	954
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	5 cut(s)	160, 685, 756, 922, 954
MlyI	GAGTC	1 cut(s)	856
MnlI	CCTC	5 cut(s)	47, 377, 495, 1011, 1129
Mph1103I	ATGCAT	1 cut(s)	830
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	4 cut(s)	564, 582, 774, 896
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	1 cut(s)	954
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	236, 677
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	3 cut(s)	127, 804, 898
NheI	GCTAGC	1 cut(s)	868
NlaIII	CATG	7 cut(s)	123, 494, 613, 626, 661, 711, 1033
NlaIV	GGNNCC	5 cut(s)	365, 440, 547, 878, 1002
NmuCI	GTSAC	4 cut(s)	283, 769, 788, 818
NsiI	ATGCAT	1 cut(s)	830
NspI	RCATGY	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	218, 463, 1036
PflMI	CCANNNNNTGG	2 cut(s)	645, 739
PinAI	ACCGGT	1 cut(s)	581
PkrI	GCNGC	6 cut(s)	118, 232, 888, 1045, 1075, 1111
PleI	GAGTC	1 cut(s)	855
PpsI	GAGTC	1 cut(s)	855
PpuMI	RGGWCCY	1 cut(s)	482
Psp1406I	AACGTT	1 cut(s)	1146
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	2 cut(s)	784, 872
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	5 cut(s)	365, 440, 547, 878, 1002
PspPI	GGNCC	3 cut(s)	482, 524, 701
PspPPI	RGGWCCY	1 cut(s)	482
PsrI	GAACNNNNNNTAC	2 cut(s)	899, 931
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	842
SacII	CCGCGG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
Sau3AI	GATC	3 cut(s)	127, 804, 898
Sau96I	GGNCC	3 cut(s)	482, 524, 701
SchI	GAGTC	1 cut(s)	856
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	272
SexAI	ACCWGGT	1 cut(s)	502
SfaNI	GCATC	1 cut(s)	843
Sfr303I	CCGCGG	1 cut(s)	396
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	482, 701
SmiMI	CAYNNNNRTG	1 cut(s)	842
Sse9I	AATT	5 cut(s)	160, 685, 756, 922, 954
SsiI	CCGC	8 cut(s)	69, 230, 393, 395, 599, 886, 913, 1004
SspMI	CTAG	4 cut(s)	209, 222, 249, 869
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	6 cut(s)	255, 279, 549, 622, 940, 961
TaaI	ACNGT	3 cut(s)	184, 460, 859
TaiI	ACGT	2 cut(s)	726, 1149
TaqI	TCGA	2 cut(s)	515, 807
TasI	AATT	5 cut(s)	160, 685, 756, 922, 954
TauI	GCSGC	2 cut(s)	233, 889
TfiI	GAWTC	3 cut(s)	218, 463, 1036
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	955, 1091
TseFI	GTSAC	4 cut(s)	283, 769, 788, 818
TseI	GCWGC	4 cut(s)	116, 1043, 1073, 1109
Tsp45I	GTSAC	4 cut(s)	283, 769, 788, 818
TspDTI	ATGAA	4 cut(s)	17, 42, 626, 647
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	955, 1091
Van91I	CCANNNNNTGG	2 cut(s)	645, 739
VpaK11BI	GGWCC	2 cut(s)	482, 701
XapI	RAATTY	2 cut(s)	685, 922
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 869
XmiI	GTMKAC	3 cut(s)	186, 381, 652
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	4 cut(s)	209, 222, 249, 869
Zsp2I	ATGCAT	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.