Rh2CG195000

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002816
Physical Location & Seq
Reverse (-)
18579201 .. 18580044
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG195000.1

Sequence Viewer

Length: 633 bp
ATGCACTCGATTTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCAGGCAAAGTCGAAGCAACCGGTACACATCACTCTTCGGTATCCACCATGAAAATCGCCCATGGGATAATGAACACCATTAGTTGGGGTATAGTCATGCCAATCGGAGCTATCGTGGCTCGGAATTTCAAAGGGTTTGGTCCAGCATGGTTCTGTGTTCACGTTTCTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGTTGGTTCGGTCACCGGACTTGTGTTGGGTCACAAGTCTTCAAGGATCGAATACAAGGGTCACAAATGCATAGGCATCACGCTGATGAGTCTTGCCATAGTCCAGGTGCTAGCTGGGTTCCTTTTGCGGCCTAAACCGGATCACAAGTATAGGCGGTTCTGGAATTTGTTCCACTATGCCCTTGGTTACACTGCAATTGTACTTGGCATAGTAAGGTTTGATATATTGGAACCGCCAAAGTCGTGGAGGTATGCCTACATGGGGATTCTCGCTGCATTGGTGTTTCTCGGTGTAGTAGGGGCAGCGTTCACCCACTGGAACAACAAGAGGACTCATGCTGCGAAGACACAACTGGAACAAAGGGCGGATGAAACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

210

Amino Acids

23.01

Weight (kDa)

9.89

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 68 - 156 4.7e-06 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 2 cut(s) 138, 232
AciI CCGC 4 cut(s) 379, 406, 485, 617
AclWI GGATC 2 cut(s) 305, 399
AcsI RAATTY 2 cut(s) 178, 415
AfaI GTAC 2 cut(s) 79, 453
AfiI CCNNNNNNNGG 3 cut(s) 138, 232, 513
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 2 cut(s) 184, 294
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 2 cut(s) 164, 365
AluI AGCT 2 cut(s) 164, 365
AlwI GGATC 2 cut(s) 305, 399
AoxI GGCC 2 cut(s) 16, 380
ApeKI GCWGC 3 cut(s) 524, 554, 590
ApoI RAATTY 2 cut(s) 178, 415
AsiGI ACCGGT 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 419
AspS9I GGNCC 2 cut(s) 17, 194
AsuHPI GGTGA 2 cut(s) 256, 553
AsuNHI GCTAGC 1 cut(s) 361
AvaII GGWCC 1 cut(s) 194
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 282, 602
BbvI GCAGC 3 cut(s) 511, 566, 577
BciT130I CCWGG 1 cut(s) 356
BciVI GTATCC 1 cut(s) 106
BfaI CTAG 1 cut(s) 362
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 4 cut(s) 380, 525, 555, 591
BlsI GCNGC 4 cut(s) 381, 526, 556, 592
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 17, 194
BmiI GGNNCC 3 cut(s) 40, 371, 483
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 336
BmtI GCTAGC 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 282, 602
BsaJI CCNNGG 3 cut(s) 42, 115, 433
BsaWI WCCGGW 3 cut(s) 74, 266, 388
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 232, 513
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 572, 609
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 3 cut(s) 42, 115, 433
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 3 cut(s) 138, 232, 513
BseNI ACTGG 2 cut(s) 572, 609
BseXI GCAGC 3 cut(s) 511, 566, 577
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 2 cut(s) 18, 382
BshNI GGYRCC 1 cut(s) 38
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 3 cut(s) 75, 267, 389
BslI CCNNNNNNNGG 3 cut(s) 138, 232, 513
BsnI GGCC 2 cut(s) 18, 382
Bsp143I GATC 2 cut(s) 297, 391
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 4 cut(s) 379, 406, 485, 617
BspANI GGCC 2 cut(s) 18, 382
BspLI GGNNCC 3 cut(s) 40, 371, 483
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 2 cut(s) 305, 399
BspT107I GGYRCC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 572, 609
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 3 cut(s) 42, 115, 433
BssMI GATC 2 cut(s) 297, 391
BssT1I CCWWGG 3 cut(s) 42, 115, 433
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 115
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 1 cut(s) 625
BstKTI GATC 2 cut(s) 300, 394
BstMBI GATC 2 cut(s) 297, 391
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 356
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 354
BstV1I GCAGC 3 cut(s) 511, 566, 577
BstV2I GAAGAC 2 cut(s) 282, 602
BstXI CCANNNNNNTGG 1 cut(s) 495
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 18, 382
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 625
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 441, 565
Cac8I GCNNGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 17, 194
Csp6I GTAC 2 cut(s) 78, 452
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 6 cut(s) 103, 116, 151, 201, 511, 587
CviJI RGCY 5 cut(s) 18, 164, 173, 365, 382
CviKI_1 RGCY 5 cut(s) 18, 164, 173, 365, 382
CviQI GTAC 2 cut(s) 78, 452
DpnI GATC 2 cut(s) 299, 393
DpnII GATC 2 cut(s) 297, 391
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
EciI GGCGGA 1 cut(s) 632
Eco130I CCWWGG 3 cut(s) 42, 115, 433
Eco47I GGWCC 1 cut(s) 194
Eco91I GGTNACC 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 3 cut(s) 42, 115, 433
EcoT22I ATGCAT 1 cut(s) 323
ErhI CCWWGG 3 cut(s) 42, 115, 433
FaeI CATG 6 cut(s) 106, 119, 154, 204, 514, 590
FatI CATG 6 cut(s) 102, 115, 150, 200, 510, 586
Fnu4HI GCNGC 4 cut(s) 380, 525, 555, 591
Fsp4HI GCNGC 4 cut(s) 380, 525, 555, 591
FspBI CTAG 1 cut(s) 362
GluI GCNGC 4 cut(s) 380, 525, 555, 591
GsaI CCCAGC 1 cut(s) 369
HaeIII GGCC 2 cut(s) 18, 382
HapII CCGG 3 cut(s) 75, 267, 389
Hin1II CATG 6 cut(s) 106, 119, 154, 204, 514, 590
HinfI GANTC 3 cut(s) 340, 517, 583
HpaII CCGG 3 cut(s) 75, 267, 389
HphI GGTGA 2 cut(s) 256, 553
Hpy166II GTNNAC 3 cut(s) 80, 214, 561
Hpy188I TCNGA 2 cut(s) 161, 177
Hpy188III TCNNGA 1 cut(s) 412
Hpy8I GTNNAC 3 cut(s) 80, 214, 561
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 4, 321, 446, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 6 cut(s) 106, 119, 154, 204, 514, 590
Kzo9I GATC 2 cut(s) 297, 391
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 3 cut(s) 511, 566, 577
LweI GCATC 1 cut(s) 336
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 4 cut(s) 262, 281, 311, 437
MalI GATC 2 cut(s) 299, 393
MboI GATC 2 cut(s) 297, 391
MboII GAAGA 3 cut(s) 81, 282, 607
MfeI CAATTG 1 cut(s) 447
MluCI AATT 4 cut(s) 178, 249, 415, 447
MlyI GAGTC 2 cut(s) 349, 577
MnlI CCTC 2 cut(s) 492, 573
Mph1103I ATGCAT 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 3 cut(s) 75, 267, 389
MspR9I CCNGG 1 cut(s) 356
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 115
NdeII GATC 2 cut(s) 297, 391
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 6 cut(s) 106, 119, 154, 204, 514, 590
NlaIV GGNNCC 3 cut(s) 40, 371, 483
NmuCI GTSAC 3 cut(s) 262, 281, 311
NsiI ATGCAT 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 2 cut(s) 138, 232
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 4 cut(s) 381, 526, 556, 592
PleI GAGTC 2 cut(s) 348, 577
PpsI GAGTC 2 cut(s) 348, 577
Psp6I CCWGG 1 cut(s) 354
PspEI GGTNACC 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 3 cut(s) 40, 371, 483
PspPI GGNCC 2 cut(s) 17, 194
PsrI GAACNNNNNNTAC 2 cut(s) 392, 424
RsaI GTAC 2 cut(s) 79, 453
RsaNI GTAC 2 cut(s) 78, 452
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 4 cut(s) 380, 525, 555, 591
Sau3AI GATC 2 cut(s) 297, 391
Sau96I GGNCC 2 cut(s) 17, 194
SchI GAGTC 2 cut(s) 349, 577
ScrFI CCNGG 1 cut(s) 356
SetI ASST 8 cut(s) 27, 44, 166, 219, 360, 367, 470, 503
SfaNI GCATC 1 cut(s) 336
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 4 cut(s) 178, 249, 415, 447
SsiI CCGC 4 cut(s) 379, 406, 485, 617
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 3 cut(s) 42, 115, 433
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 1 cut(s) 219
TaqI TCGA 3 cut(s) 8, 66, 300
TaqII GACCGA 1 cut(s) 250
TasI AATT 4 cut(s) 178, 249, 415, 447
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 2 cut(s) 448, 572
TseFI GTSAC 3 cut(s) 262, 281, 311
TseI GCWGC 3 cut(s) 524, 554, 590
Tsp45I GTSAC 3 cut(s) 262, 281, 311
TspDTI ATGAA 2 cut(s) 119, 140
TspRI CASTG 2 cut(s) 448, 572
Van91I CCANNNNNTGG 2 cut(s) 138, 232
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 2 cut(s) 178, 415
XcmI CCANNNNNNNNNTGG 2 cut(s) 362, 431
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.