Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Forward (+)

43371818 .. 43373131

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G530600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCTTTTTACAAGTGTCTGTTTTTCGCATCTCTCATATTTAGCTCAGTTTTCGTCACCATGTCACAACAAGCTTGCACGCCCCAAGCCTTCAACCAAAAGACCTTTGCTGCGTGCCATAATCTACCGATTTTGAACTCCACGATACACTGGAATTATTACCCCTCCAAAGGCACCGTCGACGTGGCGTTCGCACAAGCCGTGGTGAGCGACTCCAGATGGGTTGCATGGGCCATAAACCCAACCTCCACTGGCATGGTGGGCTCCCAAGCTATCGTGGCTTTCAAGAGAACAGACGGAGCTATGTCCGTTTACTCGTCCCCGATCAAGAGCTATGGAACTCGTTTGGAGCAAGGAAATCTCAGCTTCCCTCTGTTTGATGTCTCCGCCGTGTACGAGAACAACCAGATCGTCATCTTCGCCACCGTAGGCCTTCCCAACAACGCCAGTGTCGTCAACCATGTTTGGCAGCAAGGAACTTTGTCCGGAAACACACCGCAGATGCACTCCGTGTCCGGACCAAACGTTCAGTCCTTTGGAACTCTGGATTTTCTTTCCGGGAAAGTGGAAACAGTCAGGAGGGGAACGAGTTTTGTATTCAGAGTGAAGATTTCTCATGGAATTATTAATACCATCAGTTGGGGCATTCTGATGCCCGTTGGGGCTATTGTGGCGAGGCATTTCAAGGCTGCTGATCCAGCATGGTTTCATGTTCATAGGGCGTGTCAGATGCTGGGATATTTTGGTGGAGTTGCTGGGTTCGCAACCGGGCTTTGGCTCGGCCATAAATCTTCAGGGGTTGAATATAAAGGACACCGATGCATAGGCATCACTCTTTTTGCTCTTGCAACACTTCAGGTGTTGGTTGCTTTGGGTTTGAGGCCCAACAAGACAGACAAGAAGAGAGTTTTCTGGAACTGGTTTCACTACTTGGTCGGTTATGGAACAATCATTCTCGGCATTGTCAACATCCTAAAAGGATTTGATATGCTTCAGCCAGGAAAATGGTGGAAATTTTCATATCTTATCACCATCGGTGTTTTGGGTTGTGTTGCTGCAGTGTTAGAAGCACGCGCATGGTTTCTAGTTTTGATAAGGAAGACCGATCAAGCTGCAGAACAAAATAAGGATGACACGAGTGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

383

Amino Acids

42.04

Weight (kDa)

9.59

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	1074
AccIII	TCCGGA	2 cut(s)	485, 515
AciI	CCGC	2 cut(s)	387, 497
AclI	AACGTT	1 cut(s)	525
AclWI	GGATC	1 cut(s)	689
AcoI	YGGCCR	1 cut(s)	781
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	3 cut(s)	777, 839, 977
AdeI	CACNNNGTG	1 cut(s)	511
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	170, 639, 774
AgsI	TTSAA	5 cut(s)	94, 136, 286, 685, 803
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	997
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	7 cut(s)	45, 74, 272, 302, 333, 366, 1112
AluI	AGCT	7 cut(s)	45, 74, 272, 302, 333, 366, 1112
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	689
AlwNI	CAGNNNCTG	1 cut(s)	733
Aor13HI	TCCGGA	2 cut(s)	485, 515
AoxI	GGCC	4 cut(s)	231, 430, 781, 881
ApeKI	GCWGC	5 cut(s)	110, 469, 689, 1055, 1112
ApoI	RAATTY	1 cut(s)	1013
ArsI	GACNNNNNNTTYG	6 cut(s)	162, 173, 194, 205, 515, 547
AseI	ATTAAT	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	1076
AspS9I	GGNCC	3 cut(s)	231, 518, 882
AsuC2I	CCSGG	2 cut(s)	559, 769
AsuHPI	GGTGA	3 cut(s)	49, 217, 1021
AvaII	GGWCC	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	1135
BbsI	GAAGAC	1 cut(s)	1106
BbvI	GCAGC	5 cut(s)	97, 481, 676, 1042, 1099
BccI	CCATC	3 cut(s)	213, 641, 1040
BceAI	ACGGC	2 cut(s)	185, 374
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciT130I	CCWGG	1 cut(s)	999
BcnI	CCSGG	2 cut(s)	559, 769
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	1085
BfmI	CTRYAG	2 cut(s)	1056, 1113
BisI	GCNGC	5 cut(s)	111, 470, 690, 1056, 1113
BlsI	GCNGC	5 cut(s)	112, 471, 691, 1057, 1114
Bme1390I	CCNGG	3 cut(s)	559, 769, 999
Bme18I	GGWCC	1 cut(s)	518
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	231, 518, 882
BmiI	GGNNCC	2 cut(s)	175, 265
BmrFI	CCNGG	3 cut(s)	559, 769, 999
BmsI	GCATC	6 cut(s)	38, 492, 642, 720, 809, 837
BpiI	GAAGAC	1 cut(s)	1106
BpmI	CTGGAG	1 cut(s)	199
BpuMI	CCSGG	2 cut(s)	559, 769
BsaBI	GATNNNNATC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	485, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 639, 774
Bse1I	ACTGG	4 cut(s)	155, 256, 447, 923
Bse8I	GATNNNNATC	1 cut(s)	413
BseAI	TCCGGA	2 cut(s)	485, 515
BseBI	CCWGG	1 cut(s)	999
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	969, 1135
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	3 cut(s)	170, 639, 774
BseMII	CTCAG	2 cut(s)	60, 376
BseNI	ACTGG	4 cut(s)	155, 256, 447, 923
BseXI	GCAGC	5 cut(s)	97, 481, 676, 1042, 1099
BseYI	CCCAGC	2 cut(s)	733, 755
Bsh1236I	CGCG	1 cut(s)	1074
BshFI	GGCC	4 cut(s)	233, 432, 783, 883
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	4 cut(s)	486, 516, 558, 768
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	170, 639, 774
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	4 cut(s)	233, 432, 783, 883
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp13I	TCCGGA	2 cut(s)	485, 515
Bsp143I	GATC	4 cut(s)	324, 408, 694, 1105
BspACI	CCGC	2 cut(s)	387, 497
BspANI	GGCC	4 cut(s)	233, 432, 783, 883
BspCNI	CTCAG	2 cut(s)	59, 375
BspEI	TCCGGA	2 cut(s)	485, 515
BspFNI	CGCG	1 cut(s)	1074
BspLI	GGNNCC	2 cut(s)	175, 265
BspMAI	CTGCAG	2 cut(s)	1060, 1117
BspPI	GGATC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	4 cut(s)	155, 256, 447, 923
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	4 cut(s)	324, 408, 694, 1105
BssSI	CACGAG	1 cut(s)	1135
Bst2BI	CACGAG	1 cut(s)	1135
Bst2UI	CCWGG	1 cut(s)	999
Bst4CI	ACNGT	3 cut(s)	178, 427, 574
Bst6I	CTCTTC	1 cut(s)	896
BstC8I	GCNNGC	4 cut(s)	76, 80, 115, 1072
BstDEI	CTNAG	2 cut(s)	46, 362
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	969, 1135
BstFNI	CGCG	1 cut(s)	1074
BstHHI	GCGC	1 cut(s)	1076
BstKTI	GATC	4 cut(s)	327, 411, 697, 1108
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	4 cut(s)	324, 408, 694, 1105
BstMWI	GCNNNNNNNGC	5 cut(s)	261, 278, 671, 698, 761
BstNI	CCWGG	1 cut(s)	999
BstSCI	CCNGG	3 cut(s)	557, 767, 997
BstSFI	CTRYAG	2 cut(s)	1056, 1113
BstUI	CGCG	1 cut(s)	1074
BstV1I	GCAGC	5 cut(s)	97, 481, 676, 1042, 1099
BstV2I	GAAGAC	1 cut(s)	1106
BstXI	CCANNNNNNTGG	2 cut(s)	256, 1005
BsuRI	GGCC	4 cut(s)	233, 432, 783, 883
BtgI	CCRYGG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	969, 1135
BtsI	GCAGTG	1 cut(s)	1065
BtsIMutI	CAGTG	4 cut(s)	148, 249, 454, 1065
Cac8I	GCNNGC	4 cut(s)	76, 80, 115, 1072
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	1 cut(s)	1076
Cfr13I	GGNCC	3 cut(s)	231, 518, 882
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	8 cut(s)	61, 228, 256, 461, 617, 702, 710, 1077
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	46, 362
DpnI	GATC	4 cut(s)	326, 410, 696, 1107
DpnII	GATC	4 cut(s)	324, 408, 694, 1105
DraIII	CACNNNGTG	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	781
Eam1104I	CTCTTC	1 cut(s)	896
EarI	CTCTTC	1 cut(s)	896
EciI	GGCGGA	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	3 cut(s)	777, 839, 977
EcoRII	CCWGG	1 cut(s)	997
EcoT22I	ATGCAT	1 cut(s)	824
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	8 cut(s)	64, 231, 259, 464, 620, 705, 713, 1080
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	8 cut(s)	60, 227, 255, 460, 616, 701, 709, 1076
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	5 cut(s)	111, 470, 690, 1056, 1113
FokI	GGATG	2 cut(s)	956, 1142
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	5 cut(s)	111, 470, 690, 1056, 1113
FspBI	CTAG	1 cut(s)	1085
GlaI	GCGC	1 cut(s)	1075
GluI	GCNGC	5 cut(s)	111, 470, 690, 1056, 1113
GsaI	CCCAGC	2 cut(s)	737, 759
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	4 cut(s)	233, 432, 783, 883
HapII	CCGG	4 cut(s)	486, 516, 558, 768
HhaI	GCGC	1 cut(s)	1076
Hin1II	CATG	8 cut(s)	64, 231, 259, 464, 620, 705, 713, 1080
Hin6I	GCGC	1 cut(s)	1074
HinP1I	GCGC	1 cut(s)	1074
HincII	GTYRAC	3 cut(s)	181, 457, 967
HindII	GTYRAC	3 cut(s)	181, 457, 967
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	4 cut(s)	486, 516, 558, 768
HphI	GGTGA	3 cut(s)	49, 217, 1021
Hpy166II	GTNNAC	5 cut(s)	181, 313, 394, 457, 967
Hpy188I	TCNGA	3 cut(s)	602, 651, 729
Hpy188III	TCNNGA	8 cut(s)	216, 286, 328, 486, 516, 545, 577, 913
Hpy8I	GTNNAC	5 cut(s)	181, 313, 394, 457, 967
Hpy99I	CGWCG	2 cut(s)	182, 185
HpyAV	CCTTC	2 cut(s)	100, 443
HpyCH4III	ACNGT	3 cut(s)	178, 427, 574
HpyCH4IV	ACGT	2 cut(s)	183, 525
HpyCH4V	TGCA	7 cut(s)	78, 227, 505, 822, 848, 1058, 1115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	261, 278, 671, 698, 761
HpyF3I	CTNAG	2 cut(s)	46, 362
HpySE526I	ACGT	2 cut(s)	183, 525
Hsp92II	CATG	8 cut(s)	64, 231, 259, 464, 620, 705, 713, 1080
HspAI	GCGC	1 cut(s)	1074
Kpn2I	TCCGGA	2 cut(s)	485, 515
Kzo9I	GATC	4 cut(s)	324, 408, 694, 1105
LmnI	GCTCC	3 cut(s)	269, 299, 349
Lsp1109I	GCAGC	5 cut(s)	97, 481, 676, 1042, 1099
LweI	GCATC	6 cut(s)	38, 492, 642, 720, 809, 837
MaeI	CTAG	1 cut(s)	1085
MaeII	ACGT	2 cut(s)	183, 525
MaeIII	GTNAC	2 cut(s)	55, 63
MalI	GATC	4 cut(s)	326, 410, 696, 1107
MboI	GATC	4 cut(s)	324, 408, 694, 1105
MboII	GAAGA	5 cut(s)	409, 619, 783, 913, 1111
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	3 cut(s)	154, 621, 1013
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	6 cut(s)	175, 256, 381, 573, 669, 873
Mph1103I	ATGCAT	1 cut(s)	824
MroI	TCCGGA	2 cut(s)	485, 515
MseI	TTAA	2 cut(s)	627, 1147
MslI	CAYNNNNRTG	3 cut(s)	254, 650, 1075
MspI	CCGG	4 cut(s)	486, 516, 558, 768
MspR9I	CCNGG	3 cut(s)	559, 769, 999
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	999
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	5 cut(s)	261, 278, 671, 698, 761
NciI	CCSGG	2 cut(s)	559, 769
NdeII	GATC	4 cut(s)	324, 408, 694, 1105
NlaIII	CATG	8 cut(s)	64, 231, 259, 464, 620, 705, 713, 1080
NlaIV	GGNNCC	2 cut(s)	175, 265
NmeAIII	GCCGAG	2 cut(s)	759, 936
NmuCI	GTSAC	2 cut(s)	55, 63
NsiI	ATGCAT	1 cut(s)	824
PceI	AGGCCT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 450
PctI	GAATGC	1 cut(s)	645
PflMI	CCANNNNNTGG	1 cut(s)	639
PfoI	TCCNGGA	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	112, 471, 691, 1057, 1114
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	627
Psp1406I	AACGTT	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	997
PspFI	CCCAGC	2 cut(s)	733, 755
PspGI	CCWGG	1 cut(s)	997
PspN4I	GGNNCC	2 cut(s)	175, 265
PspPI	GGNCC	3 cut(s)	231, 518, 882
PstI	CTGCAG	2 cut(s)	1060, 1117
PstNI	CAGNNNCTG	1 cut(s)	733
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	3 cut(s)	254, 650, 1075
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	627, 1147
SatI	GCNGC	5 cut(s)	111, 470, 690, 1056, 1113
Sau3AI	GATC	4 cut(s)	324, 408, 694, 1105
Sau96I	GGNCC	3 cut(s)	231, 518, 882
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	559, 769, 999
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	6 cut(s)	38, 492, 642, 720, 809, 837
SfcI	CTRYAG	2 cut(s)	1056, 1113
SgrDI	CGTCGACG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	3 cut(s)	254, 650, 1075
Sse9I	AATT	3 cut(s)	154, 621, 1013
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	2 cut(s)	387, 497
SspMI	CTAG	1 cut(s)	1085
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	557, 767, 997
TaaI	ACNGT	3 cut(s)	178, 427, 574
TaiI	ACGT	2 cut(s)	186, 528
TaqI	TCGA	1 cut(s)	180
TaqII	GACCGA	1 cut(s)	1118
TasI	AATT	3 cut(s)	154, 621, 1013
Tru1I	TTAA	2 cut(s)	627, 1147
Tru9I	TTAA	2 cut(s)	627, 1147
TscAI	CASTG	4 cut(s)	155, 256, 454, 1065
TseFI	GTSAC	2 cut(s)	55, 63
TseI	GCWGC	5 cut(s)	110, 469, 689, 1055, 1112
Tsp45I	GTSAC	2 cut(s)	55, 63
TspDTI	ATGAA	3 cut(s)	698, 704, 1008
TspGWI	ACGGA	3 cut(s)	298, 312, 499
TspRI	CASTG	4 cut(s)	155, 256, 454, 1065
Van91I	CCANNNNNTGG	1 cut(s)	639
VpaK11BI	GGWCC	1 cut(s)	518
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	1 cut(s)	1013
XcmI	CCANNNNNNNNNTGG	3 cut(s)	256, 1005, 1039
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	1085
Zsp2I	ATGCAT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.