Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Forward (+)

18431592 .. 18432743

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017577

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTAAGATTGTTCCTTCACTCTTCCTTCTCTCCCTCTTATTCACTTCTTCACTCTCAACCCTAACCGCACAAACCTGCTCAACCCACCAGTTCCCTAACCACAAAACCTTTGCAGCATGTAATGATCTACCAGTCCTAAACTCCACTATTTACTGGAATTATTTCCCATCAAACGGAACAGTAGACCTTGCATTCAGAGAAACCCTAGTGGGCGATTCTAGATGGGCGGCGTGGGCGATAAACCCTAGTTCCAAGGGTATGGTGGGCTCGCAAGCCTTGGTCGCTTTTCAAAGAAGCGACGGAACAATGGCTGTTTATTCGTCGCCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTGTCCGCGGTATACGAAAACAAAGAAATCACTATCTTTGCCACCCTAGGGCTCCCAAACAATGTTACAACTGTGAATCAACTATGGCAACAAGGACCTCTGCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGACACCTTGGATTTTCTTTCCGGCAAAGTCGAAGGAACCGGTACACATCACTCTGCGGTGTCCACCATGAAAATCGCCCATGGGATAATGAACACCATTAGTTGGGGTATACTCATGCCAATCGGAGCTATCGTGGCTCGGAATTTCAAAGGGTTTGGTCCAGCATGGTTCTACGTTCACGTTTCTTGCCAAATCTTGGGTTCTCTTGGTGGAATTGCTGGCTCAGTCACCGGACTTGTGCTGGGTCACAAGTCTTCAGGGATCGAATACAAAGGTCACAAATGCATAGGCATCACGCTGATGAGTCTTGCCACAGTCCAGGTGCTAGCTGGGTTCCTTTTGCGGCCTAAACCGGATCACAAGTATAGGCGGTTCTGGAATTTGTTTCACTATGCCCTTGGTTGCACTGTAATTGTCCTTGGCATAGTAAACATCTTCAAAGGGTTTGATATATTGGAACCGCCAAAGTCGTGGAGGTATGCCTACATGGGGATTCTCGCTGCGTTGGTGTTTCTCTGTGTAGTAGGGGCAGCGTTCACACACTGGAACAAGAAGAAAAATCAGGCTGCGAAGACACAACTGGAACAAAGGGAGGATGAAAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

384

Amino Acids

41.93

Weight (kDa)

9.18

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF568	PF04526	88 - 186	4.8e-28	Protein of unknown function (DUF568)
Cytochrom_B561	PF03188	235 - 330	6.3e-07	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccB7I	CCANNNNNTGG	2 cut(s)	645, 739
AccI	GTMKAC	4 cut(s)	186, 381, 399, 652
AccII	CGCG	1 cut(s)	395
AciI	CCGC	8 cut(s)	69, 230, 393, 395, 599, 886, 913, 1004
AclI	AACGTT	1 cut(s)	1146
AclWI	GGATC	2 cut(s)	812, 906
AcsI	RAATTY	2 cut(s)	685, 922
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
AgeI	ACCGGT	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	293, 691, 982
AjnI	CCWGG	2 cut(s)	502, 861
AluBI	AGCT	3 cut(s)	339, 671, 872
AluI	AGCT	3 cut(s)	339, 671, 872
AlwI	GGATC	2 cut(s)	812, 906
AoxI	GGCC	2 cut(s)	523, 887
ApeKI	GCWGC	4 cut(s)	116, 1043, 1073, 1109
ApoI	RAATTY	2 cut(s)	685, 922
AsiGI	ACCGGT	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	164
AspA2I	CCTAGG	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	482, 524, 701
AsuHPI	GGTGA	1 cut(s)	763
AsuNHI	GCTAGC	1 cut(s)	868
AvaII	GGWCC	2 cut(s)	482, 701
AvrII	CCTAGG	1 cut(s)	433
BanII	GRGCYC	2 cut(s)	272, 441
BbsI	GAAGAC	2 cut(s)	789, 1121
BbvI	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BccI	CCATC	2 cut(s)	178, 219
BciT130I	CCWGG	2 cut(s)	504, 863
BfaI	CTAG	5 cut(s)	209, 222, 249, 434, 869
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
BlnI	CCTAGG	1 cut(s)	433
BlsI	GCNGC	6 cut(s)	118, 232, 888, 1045, 1075, 1111
Bme1390I	CCNGG	2 cut(s)	504, 863
Bme18I	GGWCC	2 cut(s)	482, 701
BmgT120I	GGNCC	3 cut(s)	482, 524, 701
BmiI	GGNNCC	5 cut(s)	365, 440, 580, 878, 1002
BmrFI	CCNGG	2 cut(s)	504, 863
BmsI	GCATC	1 cut(s)	843
BmtI	GCTAGC	1 cut(s)	872
BpiI	GAAGAC	2 cut(s)	789, 1121
BsaJI	CCNNGG	8 cut(s)	255, 279, 393, 433, 549, 622, 940, 961
BsaWI	WCCGGW	3 cut(s)	581, 773, 895
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	5 cut(s)	91, 134, 161, 1091, 1128
BseBI	CCWGG	2 cut(s)	504, 863
BseDI	CCNNGG	8 cut(s)	255, 279, 393, 433, 549, 622, 940, 961
BseGI	GGATG	1 cut(s)	1144
BseLI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	5 cut(s)	91, 134, 161, 1091, 1128
BseXI	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BseYI	CCCAGC	2 cut(s)	784, 872
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	525, 889
BshTI	ACCGGT	1 cut(s)	581
BsiSI	CCGG	4 cut(s)	564, 582, 774, 896
BslI	CCNNNNNNNGG	6 cut(s)	176, 435, 491, 645, 739, 1032
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	525, 889
Bsp1286I	GDGCHC	2 cut(s)	272, 441
Bsp143I	GATC	3 cut(s)	127, 804, 898
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	8 cut(s)	69, 230, 393, 395, 599, 886, 913, 1004
BspANI	GGCC	2 cut(s)	525, 889
BspCNI	CTCAG	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	5 cut(s)	365, 440, 580, 878, 1002
BspMI	ACCTGC	1 cut(s)	86
BspOI	GCTAGC	1 cut(s)	872
BspPI	GGATC	2 cut(s)	812, 906
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	5 cut(s)	91, 134, 161, 1091, 1128
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	8 cut(s)	255, 279, 393, 433, 549, 622, 940, 961
BssMI	GATC	3 cut(s)	127, 804, 898
BssNAI	GTATAC	2 cut(s)	400, 653
BssT1I	CCWWGG	7 cut(s)	255, 279, 433, 549, 622, 940, 961
Bst1107I	GTATAC	2 cut(s)	400, 653
Bst2UI	CCWGG	2 cut(s)	504, 863
Bst4CI	ACNGT	4 cut(s)	184, 460, 859, 952
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	4 cut(s)	272, 276, 763, 870
BstDEI	CTNAG	2 cut(s)	6, 766
BstDSI	CCRYGG	2 cut(s)	393, 622
BstF5I	GGATG	1 cut(s)	1144
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	3 cut(s)	130, 807, 901
BstMBI	GATC	3 cut(s)	127, 804, 898
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 284, 677
BstNI	CCWGG	2 cut(s)	504, 863
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	502, 861
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	4 cut(s)	128, 1030, 1085, 1096
BstV2I	GAAGAC	2 cut(s)	789, 1121
BstXI	CCANNNNNNTGG	2 cut(s)	262, 1014
BstZ17I	GTATAC	2 cut(s)	400, 653
BsuRI	GGCC	2 cut(s)	525, 889
BtgI	CCRYGG	2 cut(s)	393, 622
BtsCI	GGATG	1 cut(s)	1144
BtsIMutI	CAGTG	2 cut(s)	948, 1084
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	4 cut(s)	272, 276, 763, 870
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	3 cut(s)	482, 524, 701
Cfr42I	CCGCGG	1 cut(s)	396
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	585
CspAI	ACCGGT	1 cut(s)	581
CviAII	CATG	7 cut(s)	120, 491, 610, 623, 658, 708, 1030
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	2 cut(s)	6, 766
DpnI	GATC	3 cut(s)	129, 806, 900
DpnII	GATC	3 cut(s)	127, 804, 898
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	7 cut(s)	255, 279, 433, 549, 622, 940, 961
Eco24I	GRGCYC	2 cut(s)	272, 441
Eco47I	GGWCC	2 cut(s)	482, 701
Eco57I	CTGAAG	1 cut(s)	783
EcoO109I	RGGNCCY	2 cut(s)	482, 524
EcoRII	CCWGG	2 cut(s)	502, 861
EcoT14I	CCWWGG	7 cut(s)	255, 279, 433, 549, 622, 940, 961
EcoT22I	ATGCAT	1 cut(s)	830
EcoT38I	GRGCYC	2 cut(s)	272, 441
ErhI	CCWWGG	7 cut(s)	255, 279, 433, 549, 622, 940, 961
FaeI	CATG	7 cut(s)	123, 494, 613, 626, 661, 711, 1033
FatI	CATG	7 cut(s)	119, 490, 609, 622, 657, 707, 1029
FblI	GTMKAC	4 cut(s)	186, 381, 399, 652
Fnu4HI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
FriOI	GRGCYC	2 cut(s)	272, 441
Fsp4HI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
FspBI	CTAG	5 cut(s)	209, 222, 249, 434, 869
GluI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
GsaI	CCCAGC	2 cut(s)	788, 876
HaeIII	GGCC	2 cut(s)	525, 889
HapII	CCGG	4 cut(s)	564, 582, 774, 896
Hin1II	CATG	7 cut(s)	123, 494, 613, 626, 661, 711, 1033
HinfI	GANTC	4 cut(s)	218, 463, 847, 1036
HpaII	CCGG	4 cut(s)	564, 582, 774, 896
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	9 cut(s)	187, 382, 400, 587, 606, 653, 721, 973, 1080
Hpy188I	TCNGA	3 cut(s)	200, 668, 684
Hpy188III	TCNNGA	2 cut(s)	222, 919
Hpy8I	GTNNAC	9 cut(s)	187, 382, 400, 587, 606, 653, 721, 973, 1080
Hpy99I	CGWCG	2 cut(s)	305, 328
HpyAV	CCTTC	3 cut(s)	27, 38, 569
HpyCH4III	ACNGT	4 cut(s)	184, 460, 859, 952
HpyCH4IV	ACGT	3 cut(s)	717, 723, 1146
HpyCH4V	TGCA	6 cut(s)	116, 194, 490, 511, 828, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 284, 677
HpyF3I	CTNAG	2 cut(s)	6, 766
HpySE526I	ACGT	3 cut(s)	717, 723, 1146
Hsp92II	CATG	7 cut(s)	123, 494, 613, 626, 661, 711, 1033
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	127, 804, 898
LmnI	GCTCC	3 cut(s)	355, 444, 668
Lsp1109I	GCAGC	4 cut(s)	128, 1030, 1085, 1096
LweI	GCATC	1 cut(s)	843
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	5 cut(s)	209, 222, 249, 434, 869
MaeII	ACGT	3 cut(s)	717, 723, 1146
MaeIII	GTNAC	5 cut(s)	451, 494, 769, 788, 818
MalI	GATC	3 cut(s)	129, 806, 900
MboI	GATC	3 cut(s)	127, 804, 898
MboII	GAAGA	6 cut(s)	16, 42, 789, 970, 1108, 1126
MhlI	GDGCHC	2 cut(s)	272, 441
MluCI	AATT	5 cut(s)	160, 685, 756, 922, 954
MlyI	GAGTC	1 cut(s)	856
MnlI	CCTC	5 cut(s)	47, 377, 495, 1011, 1129
Mph1103I	ATGCAT	1 cut(s)	830
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	4 cut(s)	564, 582, 774, 896
MspR9I	CCNGG	2 cut(s)	504, 863
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	504, 863
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	236, 284, 677
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	3 cut(s)	127, 804, 898
NheI	GCTAGC	1 cut(s)	868
NlaIII	CATG	7 cut(s)	123, 494, 613, 626, 661, 711, 1033
NlaIV	GGNNCC	5 cut(s)	365, 440, 580, 878, 1002
NmuCI	GTSAC	3 cut(s)	769, 788, 818
NsiI	ATGCAT	1 cut(s)	830
NspI	RCATGY	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	218, 463, 1036
PflMI	CCANNNNNTGG	2 cut(s)	645, 739
PinAI	ACCGGT	1 cut(s)	581
PkrI	GCNGC	6 cut(s)	118, 232, 888, 1045, 1075, 1111
PleI	GAGTC	1 cut(s)	855
PpsI	GAGTC	1 cut(s)	855
PpuMI	RGGWCCY	1 cut(s)	482
Psp1406I	AACGTT	1 cut(s)	1146
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	502, 861
PspFI	CCCAGC	2 cut(s)	784, 872
PspGI	CCWGG	2 cut(s)	502, 861
PspN4I	GGNNCC	5 cut(s)	365, 440, 580, 878, 1002
PspPI	GGNCC	3 cut(s)	482, 524, 701
PspPPI	RGGWCCY	1 cut(s)	482
PsrI	GAACNNNNNNTAC	2 cut(s)	899, 931
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	842
SacII	CCGCGG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	6 cut(s)	117, 231, 887, 1044, 1074, 1110
Sau3AI	GATC	3 cut(s)	127, 804, 898
Sau96I	GGNCC	3 cut(s)	482, 524, 701
SchI	GAGTC	1 cut(s)	856
ScrFI	CCNGG	2 cut(s)	504, 863
SduI	GDGCHC	2 cut(s)	272, 441
SexAI	ACCWGGT	1 cut(s)	502
SfaNI	GCATC	1 cut(s)	843
Sfr303I	CCGCGG	1 cut(s)	396
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	482, 701
SmiMI	CAYNNNNRTG	1 cut(s)	842
Sse9I	AATT	5 cut(s)	160, 685, 756, 922, 954
SsiI	CCGC	8 cut(s)	69, 230, 393, 395, 599, 886, 913, 1004
SspMI	CTAG	5 cut(s)	209, 222, 249, 434, 869
StyD4I	CCNGG	2 cut(s)	502, 861
StyI	CCWWGG	7 cut(s)	255, 279, 433, 549, 622, 940, 961
TaaI	ACNGT	4 cut(s)	184, 460, 859, 952
TaiI	ACGT	3 cut(s)	720, 726, 1149
TaqI	TCGA	3 cut(s)	515, 573, 807
TasI	AATT	5 cut(s)	160, 685, 756, 922, 954
TauI	GCSGC	2 cut(s)	233, 889
TfiI	GAWTC	3 cut(s)	218, 463, 1036
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	955, 1091
TseFI	GTSAC	3 cut(s)	769, 788, 818
TseI	GCWGC	4 cut(s)	116, 1043, 1073, 1109
Tsp45I	GTSAC	3 cut(s)	769, 788, 818
TspDTI	ATGAA	2 cut(s)	626, 647
TspGWI	ACGGA	2 cut(s)	192, 318
TspRI	CASTG	2 cut(s)	955, 1091
Van91I	CCANNNNNTGG	2 cut(s)	645, 739
VpaK11BI	GGWCC	2 cut(s)	482, 701
XapI	RAATTY	2 cut(s)	685, 922
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 869
XmaJI	CCTAGG	1 cut(s)	433
XmiI	GTMKAC	4 cut(s)	186, 381, 399, 652
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	5 cut(s)	209, 222, 249, 434, 869
Zsp2I	ATGCAT	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.