Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017496.1

Orthogroup ID

OG0002816

Physical Location & Seq

Genomic Coordinates Reverse (-)

12191 .. 14355

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017496.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgatggagcggttcagatcacggcgacgcggcgacgtgttgggagggagcgtggccggaccatggtgcacgacgggtctgggaggagccggtggactgatccaaaccaagaggatgggcctgagtgatctctttggtgtccctattgggctcaagttttgggccaggagaaaccctagttggcgattcaagatgggctacgtgagcgataaactggaactcaagggtatggtgggttcacaagccttcgatggaaccatggctgtttattcatcgcttataaaaagctacgacactcacttggagcaagggaacctctcctttcttgtctataccttgtccgcggtttacgaaaacgatttcttcgttatctttgccaccctagggatcccaaacaatgttacaactgtgaatcaattatggcaacaaggacctctgcatggtaacacaccaggtatgcactcgatgtcaggccctaaccttaaatcctatggcaccttggattttctttcaggcaaagtcgtagcaaccggtacacatcactcttcggtatccaccatgaaaatcgcccatgggataatgaacaccattagttggggtatactcatgccaatcggagctatcgtggcttggaatttcaaagggtttggtccagcatggttctacgttcacgtttcttgccaaattttgggttctcttggtggaattgctggctcagtcaccagactcatgctgggtcacaagcggttttggaatttgttccactatgcccttggttacactgcaattgtcctgggcatagtaaacatcttcaacgggtttgatatattggaaccgccaaagtcgtggaggtgtgccaacatggggattctcactgcattgatgtttctcggtgtagtaggggcagccccactggaacaacaagaagactcaagctgtgaagacacaactggaacaaagggcggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

322

Amino Acids

34.94

Weight (kDa)

9.26

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59070 AT5G48750
fragaria_vesca	FvH4_1g16900 FvH4_1g19870
malus_domestica	MD02G1185700.v1.1 MD02G1186700.v1.1 MD15G1297900.v1.1
prunus_persica	Prupe.1G530600_v2.0.a1 Prupe.6G221100_v2.0.a1
pyrus_communis	pycom02g15060 pycom15g26070
rosa_chinensis	RchiOBHm_Chr2g0106931 RchiOBHm_Chr2g0107391 RchiOBHm_Chr2g0107401 RchiOBHm_Chr2g0158541
rosa_laevigata	RLG00000017544 RLG00000017577
rosa_multiflora	Rmu_sc0005896.1_g000001 Rmu_sc0010952.1_g000003 Rmu_sc0017496.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091230 Rroxscaffold_2G00136380 Rroxscaffold_2G00136730
rosa_rugosa	Rorug02G0139300 Rorug02G0143100
rosa_samantha	Rh2AG190400 Rh2AG193300 Rh2AG535900 Rh2BG202000 Rh2BG205700 Rh2BG549100 Rh2CG195000 Rh2CG198600 Rh2CG198700 Rh2CG519600 Rh2DG197100 Rh2DG200600 Rh2DG558800
rosa_wichuraiana	Rw2G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	494
AccB7I	CCANNNNNTGG	2 cut(s)	594, 688
AccBSI	CCGCTC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	2 cut(s)	30, 344
AciI	CCGC	7 cut(s)	10, 30, 342, 344, 745, 836, 963
AclWI	GGATC	3 cut(s)	94, 382, 395
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	3 cut(s)	634, 684, 754
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	6 cut(s)	63, 384, 440, 594, 688, 864
AflIII	ACRYGT	1 cut(s)	36
AgeI	ACCGGT	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	190, 640, 814
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	164, 451, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	3 cut(s)	288, 620, 936
AluI	AGCT	3 cut(s)	288, 620, 936
Alw21I	GWGCWC	1 cut(s)	71
Alw44I	GTGCAC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	94, 382, 395
AoxI	GGCC	4 cut(s)	54, 118, 162, 472
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	905
ApoI	RAATTY	3 cut(s)	634, 684, 754
AsiGI	ACCGGT	1 cut(s)	530
Asp700I	GAANNNNTTC	1 cut(s)	758
AspA2I	CCTAGG	1 cut(s)	382
AspS9I	GGNCC	6 cut(s)	59, 118, 162, 431, 473, 650
AsuHPI	GGTGA	1 cut(s)	712
AvaII	GGWCC	3 cut(s)	59, 431, 650
AvrII	CCTAGG	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	933, 948
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	917
BccI	CCATC	3 cut(s)	109, 187, 245
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	3 cut(s)	166, 453, 794
BciVI	GTATCC	1 cut(s)	562
BfaI	CTAG	2 cut(s)	177, 383
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	2 cut(s)	31, 906
BlnI	CCTAGG	1 cut(s)	382
BlsI	GCNGC	2 cut(s)	32, 907
Bme1390I	CCNGG	3 cut(s)	166, 453, 794
Bme18I	GGWCC	3 cut(s)	59, 431, 650
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	6 cut(s)	59, 118, 162, 431, 473, 650
BmiI	GGNNCC	6 cut(s)	88, 256, 314, 389, 496, 834
BmrFI	CCNGG	3 cut(s)	166, 453, 794
BpiI	GAAGAC	2 cut(s)	933, 948
BpuEI	CTTGAG	3 cut(s)	137, 206, 916
BsaAI	YACGTR	1 cut(s)	202
BsaJI	CCNNGG	8 cut(s)	62, 258, 342, 382, 498, 571, 772, 793
BsaWI	WCCGGW	1 cut(s)	530
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 609, 639
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 384, 440, 594, 688, 864
Bse118I	RCCGGY	2 cut(s)	89, 530
Bse1I	ACTGG	3 cut(s)	219, 918, 955
BseBI	CCWGG	3 cut(s)	166, 453, 794
BseDI	CCNNGG	8 cut(s)	62, 258, 342, 382, 498, 571, 772, 793
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	6 cut(s)	63, 384, 440, 594, 688, 864
BseMII	CTCAG	2 cut(s)	113, 729
BseNI	ACTGG	3 cut(s)	219, 918, 955
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	917
BseYI	CCCAGC	1 cut(s)	733
Bsh1236I	CGCG	2 cut(s)	30, 344
BshFI	GGCC	4 cut(s)	56, 120, 164, 474
BshNI	GGYRCC	1 cut(s)	494
BshTI	ACCGGT	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	3 cut(s)	57, 90, 531
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	6 cut(s)	63, 384, 440, 594, 688, 864
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	4 cut(s)	56, 120, 164, 474
Bsp1286I	GDGCHC	2 cut(s)	71, 153
Bsp143I	GATC	4 cut(s)	17, 99, 127, 387
Bsp19I	CCATGG	3 cut(s)	62, 258, 571
BspACI	CCGC	7 cut(s)	10, 30, 342, 344, 745, 836, 963
BspANI	GGCC	4 cut(s)	56, 120, 164, 474
BspCNI	CTCAG	2 cut(s)	114, 728
BspFNI	CGCG	2 cut(s)	30, 344
BspLI	GGNNCC	6 cut(s)	88, 256, 314, 389, 496, 834
BspPI	GGATC	3 cut(s)	94, 382, 395
BspT107I	GGYRCC	1 cut(s)	494
BsrBI	CCGCTC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	89, 530
BsrI	ACTGG	3 cut(s)	219, 918, 955
BssAI	RCCGGY	2 cut(s)	89, 530
BssECI	CCNNGG	8 cut(s)	62, 258, 342, 382, 498, 571, 772, 793
BssMI	GATC	4 cut(s)	17, 99, 127, 387
BssNAI	GTATAC	1 cut(s)	602
BssT1I	CCWWGG	6 cut(s)	62, 258, 382, 498, 571, 772
Bst1107I	GTATAC	1 cut(s)	602
Bst2UI	CCWGG	3 cut(s)	166, 453, 794
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	550
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	2 cut(s)	122, 715
BstDSI	CCRYGG	4 cut(s)	62, 258, 342, 571
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	2 cut(s)	30, 344
BstKTI	GATC	4 cut(s)	20, 102, 130, 390
BstMBI	GATC	4 cut(s)	17, 99, 127, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 626
BstNI	CCWGG	3 cut(s)	166, 453, 794
BstSCI	CCNGG	3 cut(s)	164, 451, 792
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	2 cut(s)	30, 344
BstV1I	GCAGC	1 cut(s)	917
BstV2I	GAAGAC	2 cut(s)	933, 948
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	2 cut(s)	115, 846
BstYI	RGATCY	1 cut(s)	387
BstZ17I	GTATAC	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	4 cut(s)	56, 120, 164, 474
BtgI	CCRYGG	4 cut(s)	62, 258, 342, 571
BtgZI	GCGATG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	2 cut(s)	780, 873
BtsIMutI	CAGTG	3 cut(s)	780, 873, 911
Cac8I	GCNNGC	1 cut(s)	712
Cfr10I	RCCGGY	2 cut(s)	89, 530
Cfr13I	GGNCC	6 cut(s)	59, 118, 162, 431, 473, 650
Cfr42I	CCGCGG	1 cut(s)	345
CseI	GACGC	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	534
CspAI	ACCGGT	1 cut(s)	530
CviAII	CATG	9 cut(s)	63, 259, 440, 559, 572, 607, 657, 730, 862
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	2 cut(s)	122, 715
DpnI	GATC	4 cut(s)	19, 101, 129, 389
DpnII	GATC	4 cut(s)	17, 99, 127, 387
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
Eco130I	CCWWGG	6 cut(s)	62, 258, 382, 498, 571, 772
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	3 cut(s)	59, 431, 650
EcoO109I	RGGNCCY	2 cut(s)	431, 473
EcoRII	CCWGG	3 cut(s)	164, 451, 792
EcoT14I	CCWWGG	6 cut(s)	62, 258, 382, 498, 571, 772
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	6 cut(s)	62, 258, 382, 498, 571, 772
FaeI	CATG	9 cut(s)	66, 262, 443, 562, 575, 610, 660, 733, 865
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	9 cut(s)	62, 258, 439, 558, 571, 606, 656, 729, 861
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	31, 906
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	31, 906
FspBI	CTAG	2 cut(s)	177, 383
GluI	GCNGC	2 cut(s)	31, 906
GsaI	CCCAGC	1 cut(s)	737
HaeIII	GGCC	4 cut(s)	56, 120, 164, 474
HapII	CCGG	3 cut(s)	57, 90, 531
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	9 cut(s)	66, 262, 443, 562, 575, 610, 660, 733, 865
HinfI	GANTC	5 cut(s)	186, 412, 726, 868, 929
HpaII	CCGG	3 cut(s)	57, 90, 531
HphI	GGTGA	1 cut(s)	712
Hpy166II	GTNNAC	8 cut(s)	69, 95, 239, 349, 536, 602, 670, 805
Hpy188I	TCNGA	2 cut(s)	17, 617
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	8 cut(s)	69, 95, 239, 349, 536, 602, 670, 805
Hpy99I	CGWCG	3 cut(s)	30, 38, 76
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	4 cut(s)	36, 201, 666, 672
HpyCH4V	TGCA	5 cut(s)	69, 439, 460, 785, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 626
HpyF3I	CTNAG	2 cut(s)	122, 715
HpySE526I	ACGT	4 cut(s)	36, 201, 666, 672
Hsp92II	CATG	9 cut(s)	66, 262, 443, 562, 575, 610, 660, 733, 865
KspI	CCGCGG	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	17, 99, 127, 387
LmnI	GCTCC	5 cut(s)	7, 48, 86, 304, 617
Lsp1109I	GCAGC	1 cut(s)	917
MabI	ACCWGGT	1 cut(s)	451
MaeI	CTAG	2 cut(s)	177, 383
MaeII	ACGT	4 cut(s)	36, 201, 666, 672
MaeIII	GTNAC	5 cut(s)	400, 443, 718, 737, 776
MalI	GATC	4 cut(s)	19, 101, 129, 389
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	4 cut(s)	17, 99, 127, 387
MboII	GAAGA	5 cut(s)	355, 537, 802, 938, 953
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	71, 153
MluCI	AATT	6 cut(s)	416, 634, 684, 705, 754, 786
MlyI	GAGTC	2 cut(s)	720, 923
MnlI	CCTC	6 cut(s)	38, 77, 105, 326, 444, 843
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	3 cut(s)	57, 90, 531
MspR9I	CCNGG	3 cut(s)	166, 453, 794
MunI	CAATTG	1 cut(s)	786
MvaI	CCWGG	3 cut(s)	166, 453, 794
MvnI	CGCG	2 cut(s)	30, 344
MwoI	GCNNNNNNNGC	2 cut(s)	204, 626
NcoI	CCATGG	3 cut(s)	62, 258, 571
NdeII	GATC	4 cut(s)	17, 99, 127, 387
NlaIII	CATG	9 cut(s)	66, 262, 443, 562, 575, 610, 660, 733, 865
NlaIV	GGNNCC	6 cut(s)	88, 256, 314, 389, 496, 834
NmuCI	GTSAC	2 cut(s)	718, 737
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 621
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	3 cut(s)	186, 412, 868
PflMI	CCANNNNNTGG	2 cut(s)	594, 688
PinAI	ACCGGT	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	32, 907
PleI	GAGTC	2 cut(s)	720, 923
PpsI	GAGTC	2 cut(s)	720, 923
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	431
PsiI	TTATAA	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	3 cut(s)	164, 451, 792
PspFI	CCCAGC	1 cut(s)	733
PspGI	CCWGG	3 cut(s)	164, 451, 792
PspN4I	GGNNCC	6 cut(s)	88, 256, 314, 389, 496, 834
PspPI	GGNCC	6 cut(s)	59, 118, 162, 431, 473, 650
PspPPI	RGGWCCY	1 cut(s)	431
PsrI	GAACNNNNNNTAC	2 cut(s)	220, 252
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SacII	CCGCGG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	2 cut(s)	31, 906
Sau3AI	GATC	4 cut(s)	17, 99, 127, 387
Sau96I	GGNCC	6 cut(s)	59, 118, 162, 431, 473, 650
SchI	GAGTC	2 cut(s)	720, 923
ScrFI	CCNGG	3 cut(s)	166, 453, 794
SduI	GDGCHC	2 cut(s)	71, 153
SexAI	ACCWGGT	1 cut(s)	451
Sfr303I	CCGCGG	1 cut(s)	345
SgrBI	CCGCGG	1 cut(s)	345
SinI	GGWCC	3 cut(s)	59, 431, 650
SmlI	CTYRAG	3 cut(s)	152, 221, 931
SmoI	CTYRAG	3 cut(s)	152, 221, 931
Sse9I	AATT	6 cut(s)	416, 634, 684, 705, 754, 786
SsiI	CCGC	7 cut(s)	10, 30, 342, 344, 745, 836, 963
SspMI	CTAG	2 cut(s)	177, 383
StyD4I	CCNGG	3 cut(s)	164, 451, 792
StyI	CCWWGG	6 cut(s)	62, 258, 382, 498, 571, 772
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	4 cut(s)	39, 204, 669, 675
TaqI	TCGA	2 cut(s)	249, 464
TasI	AATT	6 cut(s)	416, 634, 684, 705, 754, 786
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	3 cut(s)	186, 412, 868
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	3 cut(s)	787, 880, 918
TseFI	GTSAC	2 cut(s)	718, 737
TseI	GCWGC	1 cut(s)	905
Tsp45I	GTSAC	2 cut(s)	718, 737
TspDTI	ATGAA	3 cut(s)	261, 575, 596
TspRI	CASTG	3 cut(s)	787, 880, 918
Van91I	CCANNNNNTGG	2 cut(s)	594, 688
VneI	GTGCAC	1 cut(s)	67
VpaK11BI	GGWCC	3 cut(s)	59, 431, 650
XapI	RAATTY	3 cut(s)	634, 684, 754
XcmI	CCANNNNNNNNNTGG	2 cut(s)	730, 770
XmaJI	CCTAGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	2 cut(s)	177, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.