Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

5135673 .. 5136140

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTTCAGGATCCTAATCCGGACTTGCAGAAGGCTGCTCTTGAGAGTATGAGGCAGGAAATCCGAGCTTTAACAAGTTCAATGACTTCAGTTCCCAAACCACTAAAGTTTCTGCGTCCCCAGTATGTAACTCTTAAAGCGTTTCATGAAACAATGGCTGATTCTAATCTCAAGAAGTACATTTCTGATATCCTGTCTGTCCTGGCCCTTACCACGCTCTACAGATTGCACTATTTCTTGATAACACGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

84

Amino Acids

9.76

Weight (kDa)

9.82

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	2 - 73	2.4e-26	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	2 cut(s)	5, 18
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AlwI	GGATC	2 cut(s)	5, 18
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	220
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	115
BpuEI	CTTGAG	2 cut(s)	62, 155
BsaBI	GATNNNNATC	2 cut(s)	15, 165
BsaWI	WCCGGW	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	2 cut(s)	15, 165
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	203
BseJI	GATNNNNATC	2 cut(s)	15, 165
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	206
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	5, 18
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	206
CciI	TCATGA	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	4 cut(s)	35, 68, 158, 206
CviKI_1	RGCY	4 cut(s)	35, 68, 158, 206
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	190
FaeI	CATG	1 cut(s)	149
FaiI	YATR	3 cut(s)	50, 126, 147
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	149
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	65, 187
Hpy188III	TCNNGA	6 cut(s)	8, 20, 41, 146, 172, 238
HpyAV	CCTTC	2 cut(s)	25, 243
HpyCH4V	TGCA	2 cut(s)	28, 229
Hsp92II	CATG	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	6 cut(s)	33, 41, 134, 188, 206, 215
Lsp1109I	GCAGC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MflI	RGATCY	1 cut(s)	10
MnlI	CCTC	1 cut(s)	45
MroI	TCCGGA	1 cut(s)	19
MseI	TTAA	2 cut(s)	71, 135
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	12
PagI	TCATGA	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	71, 135
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	2 cut(s)	70, 254
SfcI	CTRYAG	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	41, 170
SmoI	CTYRAG	2 cut(s)	41, 170
StyD4I	CCNGG	1 cut(s)	201
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	71, 135
Tru9I	TTAA	2 cut(s)	71, 135
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	134, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.