26S proteasome non-ATPase regulatory subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G08140 |
| fragaria_vesca | FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781 |
| rosa_chinensis | RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961 |
| rosa_laevigata | RLG00000014798 RLG00000018972 |
| rosa_multiflora | Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063 |
| rosa_roxburghii | Rroxscaffold_2G00116290 Rroxscaffold_5G00361030 |
| rosa_rugosa | Rorug02G0276000 Rorug02G0276100 |
| rosa_samantha | Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700 |
| rosa_wichuraiana | Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2500 |
| AccIII | TCCGGA | 1 cut(s) | 1033 |
| AciI | CCGC | 8 cut(s) | 30, 36, 42, 68, 71, 287, 926, 1823 |
| AclWI | GGATC | 6 cut(s) | 8, 173, 179, 1394, 1436, 2623 |
| AcoI | YGGCCR | 4 cut(s) | 1066, 1861, 2491, 2512 |
| AcsI | RAATTY | 3 cut(s) | 228, 661, 761 |
| AcuI | CTGAAG | 3 cut(s) | 411, 1773, 1962 |
| AcyI | GRCGYC | 1 cut(s) | 1542 |
| AdeI | CACNNNGTG | 1 cut(s) | 2333 |
| AfaI | GTAC | 5 cut(s) | 235, 552, 1267, 1316, 1718 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 188, 189, 293, 613, 2101, 2485, 2500 |
| AgsI | TTSAA | 9 cut(s) | 142, 176, 340, 767, 1222, 1761, 1850, 2636, 2653 |
| AhlI | ACTAGT | 2 cut(s) | 242, 547 |
| AjnI | CCWGG | 3 cut(s) | 709, 1899, 2514 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 134, 166 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1992, 2024 |
| Alw26I | GTCTC | 3 cut(s) | 515, 683, 2042 |
| AlwI | GGATC | 6 cut(s) | 8, 173, 179, 1394, 1436, 2623 |
| Ama87I | CYCGRG | 2 cut(s) | 188, 1189 |
| Aor13HI | TCCGGA | 1 cut(s) | 1033 |
| AoxI | GGCC | 9 cut(s) | 135, 454, 1023, 1066, 1743, 1861, 1903, 2491, 2512 |
| ApaI | GGGCCC | 1 cut(s) | 1907 |
| ApoI | RAATTY | 3 cut(s) | 228, 661, 761 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1996, 2028 |
| AspA2I | CCTAGG | 1 cut(s) | 1705 |
| AspS9I | GGNCC | 5 cut(s) | 454, 713, 1651, 1903, 1904 |
| AsuC2I | CCSGG | 4 cut(s) | 189, 190, 1070, 1294 |
| AsuHPI | GGTGA | 5 cut(s) | 449, 679, 1901, 2056, 2310 |
| AvaI | CYCGRG | 2 cut(s) | 188, 1189 |
| AvaII | GGWCC | 2 cut(s) | 713, 1651 |
| AvrII | CCTAGG | 1 cut(s) | 1705 |
| AxyI | CCTNAGG | 1 cut(s) | 2137 |
| BaeGI | GKGCMC | 1 cut(s) | 1907 |
| BalI | TGGCCA | 2 cut(s) | 1863, 2514 |
| BanII | GRGCYC | 3 cut(s) | 60, 1680, 1907 |
| BauI | CACGAG | 1 cut(s) | 1002 |
| BbsI | GAAGAC | 3 cut(s) | 630, 1247, 1703 |
| BbvCI | CCTCAGC | 1 cut(s) | 1700 |
| BccI | CCATC | 7 cut(s) | 428, 913, 1058, 1186, 1453, 1954, 2384 |
| BceAI | ACGGC | 2 cut(s) | 253, 2452 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 212, 246, 2422, 2456 |
| BciT130I | CCWGG | 3 cut(s) | 711, 1901, 2516 |
| BciVI | GTATCC | 1 cut(s) | 783 |
| BcnI | CCSGG | 4 cut(s) | 189, 190, 1070, 1294 |
| BcoDI | GTCTC | 3 cut(s) | 515, 683, 2042 |
| BcuI | ACTAGT | 2 cut(s) | 242, 547 |
| BfaI | CTAG | 5 cut(s) | 243, 548, 1086, 1475, 1706 |
| BfmI | CTRYAG | 4 cut(s) | 785, 1251, 1988, 2448 |
| BfuI | GTATCC | 1 cut(s) | 783 |
| BlnI | CCTAGG | 1 cut(s) | 1705 |
| BlpI | GCTNAGC | 1 cut(s) | 2592 |
| BmcAI | AGTACT | 1 cut(s) | 1316 |
| Bme1390I | CCNGG | 7 cut(s) | 189, 190, 711, 1070, 1294, 1901, 2516 |
| Bme18I | GGWCC | 2 cut(s) | 713, 1651 |
| BmeT110I | CYCGRG | 2 cut(s) | 188, 1189 |
| BmgT120I | GGNCC | 5 cut(s) | 454, 713, 1651, 1903, 1904 |
| BmiI | GGNNCC | 4 cut(s) | 455, 1677, 1905, 2158 |
| BmrFI | CCNGG | 7 cut(s) | 189, 190, 711, 1070, 1294, 1901, 2516 |
| BmsI | GCATC | 5 cut(s) | 14, 1174, 1211, 1990, 2206 |
| BpiI | GAAGAC | 3 cut(s) | 630, 1247, 1703 |
| BpmI | CTGGAG | 1 cut(s) | 501 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1626, 1700 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2592 |
| BpuEI | CTTGAG | 7 cut(s) | 230, 477, 1826, 1901, 1976, 2182, 2232 |
| BpuMI | CCSGG | 4 cut(s) | 189, 190, 1070, 1294 |
| BsaAI | YACGTR | 1 cut(s) | 1514 |
| BsaBI | GATNNNNATC | 3 cut(s) | 183, 1398, 2457 |
| BsaHI | GRCGYC | 1 cut(s) | 1542 |
| BsaI | GGTCTC | 2 cut(s) | 515, 2042 |
| BsaJI | CCNNGG | 5 cut(s) | 188, 1584, 1705, 1720, 1900 |
| BsaWI | WCCGGW | 2 cut(s) | 592, 1033 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 188, 189, 293, 613, 2101, 2485, 2500 |
| Bse118I | RCCGGY | 2 cut(s) | 2320, 2579 |
| Bse1I | ACTGG | 6 cut(s) | 690, 1217, 1245, 1413, 2545, 2564 |
| Bse21I | CCTNAGG | 1 cut(s) | 2137 |
| Bse3DI | GCAATG | 5 cut(s) | 1333, 1618, 1941, 2124, 2430 |
| Bse8I | GATNNNNATC | 3 cut(s) | 183, 1398, 2457 |
| BseAI | TCCGGA | 1 cut(s) | 1033 |
| BseBI | CCWGG | 3 cut(s) | 711, 1901, 2516 |
| BseDI | CCNNGG | 5 cut(s) | 188, 1584, 1705, 1720, 1900 |
| BseGI | GGATG | 4 cut(s) | 876, 1288, 2221, 2509 |
| BseJI | GATNNNNATC | 3 cut(s) | 183, 1398, 2457 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 188, 189, 293, 613, 2101, 2485, 2500 |
| BseMI | GCAATG | 5 cut(s) | 1333, 1618, 1941, 2124, 2430 |
| BseMII | CTCAG | 8 cut(s) | 270, 991, 1488, 1640, 1656, 1714, 2583, 2595 |
| BseNI | ACTGG | 6 cut(s) | 690, 1217, 1245, 1413, 2545, 2564 |
| BseRI | GAGGAG | 1 cut(s) | 1631 |
| BseSI | GKGCMC | 1 cut(s) | 1907 |
| BshFI | GGCC | 9 cut(s) | 137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514 |
| BsiHKCI | CYCGRG | 2 cut(s) | 188, 1189 |
| BsiSI | CCGG | 7 cut(s) | 189, 593, 1034, 1069, 1293, 2321, 2580 |
| BslFI | GGGAC | 4 cut(s) | 1160, 1965, 2462, 2511 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 188, 189, 293, 613, 2101, 2485, 2500 |
| BsmAI | GTCTC | 3 cut(s) | 515, 683, 2042 |
| BsmFI | GGGAC | 4 cut(s) | 1160, 1965, 2462, 2511 |
| BsmI | GAATGC | 1 cut(s) | 743 |
| BsnI | GGCC | 9 cut(s) | 137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514 |
| Bso31I | GGTCTC | 2 cut(s) | 515, 2042 |
| BsoBI | CYCGRG | 2 cut(s) | 188, 1189 |
| Bsp120I | GGGCCC | 1 cut(s) | 1903 |
| Bsp1286I | GDGCHC | 3 cut(s) | 60, 1680, 1907 |
| Bsp13I | TCCGGA | 1 cut(s) | 1033 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2592 |
| BspACI | CCGC | 8 cut(s) | 30, 36, 42, 68, 71, 287, 926, 1823 |
| BspANI | GGCC | 9 cut(s) | 137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514 |
| BspCNI | CTCAG | 8 cut(s) | 269, 990, 1489, 1639, 1657, 1713, 2584, 2596 |
| BspEI | TCCGGA | 1 cut(s) | 1033 |
| BspHI | TCATGA | 2 cut(s) | 747, 1771 |
| BspLI | GGNNCC | 4 cut(s) | 455, 1677, 1905, 2158 |
| BspMAI | CTGCAG | 2 cut(s) | 789, 1255 |
| BspPI | GGATC | 6 cut(s) | 8, 173, 179, 1394, 1436, 2623 |
| BspTNI | GGTCTC | 2 cut(s) | 515, 2042 |
| BsrDI | GCAATG | 5 cut(s) | 1333, 1618, 1941, 2124, 2430 |
| BsrFI | RCCGGY | 2 cut(s) | 2320, 2579 |
| BsrI | ACTGG | 6 cut(s) | 690, 1217, 1245, 1413, 2545, 2564 |
| BssAI | RCCGGY | 2 cut(s) | 2320, 2579 |
| BssECI | CCNNGG | 5 cut(s) | 188, 1584, 1705, 1720, 1900 |
| BssNI | GRCGYC | 1 cut(s) | 1542 |
| BssSI | CACGAG | 1 cut(s) | 1002 |
| BssT1I | CCWWGG | 3 cut(s) | 1584, 1705, 1720 |
| Bst2BI | CACGAG | 1 cut(s) | 1002 |
| Bst2UI | CCWGG | 3 cut(s) | 711, 1901, 2516 |
| Bst4CI | ACNGT | 5 cut(s) | 1174, 1278, 1992, 2068, 2449 |
| Bst6I | CTCTTC | 3 cut(s) | 762, 1938, 2670 |
| BstACI | GRCGYC | 1 cut(s) | 1542 |
| BstBAI | YACGTR | 1 cut(s) | 1514 |
| BstEII | GGTNACC | 1 cut(s) | 2062 |
| BstF5I | GGATG | 4 cut(s) | 876, 1288, 2221, 2509 |
| BstMAI | GTCTC | 3 cut(s) | 515, 683, 2042 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 42, 55, 64, 862, 1931, 2091, 2123, 2174, 2597 |
| BstNI | CCWGG | 3 cut(s) | 711, 1901, 2516 |
| BstNSI | RCATGY | 3 cut(s) | 650, 2357, 2361 |
| BstPI | GGTNACC | 1 cut(s) | 2062 |
| BstSCI | CCNGG | 7 cut(s) | 187, 188, 709, 1068, 1292, 1899, 2514 |
| BstSFI | CTRYAG | 4 cut(s) | 785, 1251, 1988, 2448 |
| BstSLI | GKGCMC | 1 cut(s) | 1907 |
| BstSNI | TACGTA | 1 cut(s) | 1514 |
| BstV2I | GAAGAC | 3 cut(s) | 630, 1247, 1703 |
| BstX2I | RGATCY | 3 cut(s) | 13, 178, 1441 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2383 |
| BstYI | RGATCY | 3 cut(s) | 13, 178, 1441 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2137 |
| BsuI | GTATCC | 1 cut(s) | 783 |
| BsuRI | GGCC | 9 cut(s) | 137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514 |
| BtgZI | GCGATG | 1 cut(s) | 1940 |
| BtsCI | GGATG | 4 cut(s) | 876, 1288, 2221, 2509 |
| BtsI | GCAGTG | 2 cut(s) | 782, 1746 |
| BtsIMutI | CAGTG | 5 cut(s) | 782, 985, 1252, 1406, 1746 |
| CciI | TCATGA | 2 cut(s) | 747, 1771 |
| Cfr10I | RCCGGY | 2 cut(s) | 2320, 2579 |
| Cfr13I | GGNCC | 5 cut(s) | 454, 713, 1651, 1903, 1904 |
| Cfr9I | CCCGGG | 1 cut(s) | 188 |
| CseI | GACGC | 2 cut(s) | 1550, 1670 |
| Csp6I | GTAC | 5 cut(s) | 234, 551, 1266, 1315, 1717 |
| CviQI | GTAC | 5 cut(s) | 234, 551, 1266, 1315, 1717 |
| DraIII | CACNNNGTG | 1 cut(s) | 2333 |
| EaeI | YGGCCR | 4 cut(s) | 1066, 1861, 2491, 2512 |
| Eam1104I | CTCTTC | 3 cut(s) | 762, 1938, 2670 |
| EarI | CTCTTC | 3 cut(s) | 762, 1938, 2670 |
| Eco105I | TACGTA | 1 cut(s) | 1514 |
| Eco130I | CCWWGG | 3 cut(s) | 1584, 1705, 1720 |
| Eco24I | GRGCYC | 3 cut(s) | 60, 1680, 1907 |
| Eco31I | GGTCTC | 2 cut(s) | 515, 2042 |
| Eco47I | GGWCC | 2 cut(s) | 713, 1651 |
| Eco57I | CTGAAG | 3 cut(s) | 411, 1773, 1962 |
| Eco81I | CCTNAGG | 1 cut(s) | 2137 |
| Eco88I | CYCGRG | 2 cut(s) | 188, 1189 |
| Eco91I | GGTNACC | 1 cut(s) | 2062 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1903, 1904 |
| EcoO65I | GGTNACC | 1 cut(s) | 2062 |
| EcoRII | CCWGG | 3 cut(s) | 709, 1899, 2514 |
| EcoT14I | CCWWGG | 3 cut(s) | 1584, 1705, 1720 |
| EcoT22I | ATGCAT | 2 cut(s) | 1135, 2359 |
| EcoT38I | GRGCYC | 3 cut(s) | 60, 1680, 1907 |
| ErhI | CCWWGG | 3 cut(s) | 1584, 1705, 1720 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 815, 847, 975, 1007, 1040, 1072, 1539, 1571 |
| FaqI | GGGAC | 4 cut(s) | 1160, 1965, 2462, 2511 |
| FauI | CCCGC | 2 cut(s) | 294, 1816 |
| FauNDI | CATATG | 1 cut(s) | 1486 |
| FokI | GGATG | 4 cut(s) | 863, 1295, 2228, 2516 |
| FriOI | GRGCYC | 3 cut(s) | 60, 1680, 1907 |
| FspBI | CTAG | 5 cut(s) | 243, 548, 1086, 1475, 1706 |
| GsuI | CTGGAG | 1 cut(s) | 501 |
| HaeIII | GGCC | 9 cut(s) | 137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514 |
| HapII | CCGG | 7 cut(s) | 189, 593, 1034, 1069, 1293, 2321, 2580 |
| HgaI | GACGC | 2 cut(s) | 1550, 1670 |
| Hin1I | GRCGYC | 1 cut(s) | 1542 |
| HincII | GTYRAC | 2 cut(s) | 604, 1288 |
| HindII | GTYRAC | 2 cut(s) | 604, 1288 |
| HindIII | AAGCTT | 1 cut(s) | 406 |
| HpaII | CCGG | 7 cut(s) | 189, 593, 1034, 1069, 1293, 2321, 2580 |
| HphI | GGTGA | 5 cut(s) | 449, 679, 1901, 2056, 2310 |
| Hpy166II | GTNNAC | 3 cut(s) | 604, 1288, 1871 |
| Hpy8I | GTNNAC | 3 cut(s) | 604, 1288, 1871 |
| Hpy99I | CGWCG | 1 cut(s) | 2016 |
| HpyAV | CCTTC | 8 cut(s) | 100, 193, 386, 716, 977, 1865, 1879, 2630 |
| HpyCH4III | ACNGT | 5 cut(s) | 1174, 1278, 1992, 2068, 2449 |
| HpyCH4IV | ACGT | 1 cut(s) | 1513 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 42, 55, 64, 862, 1931, 2091, 2123, 2174, 2597 |
| HpySE526I | ACGT | 1 cut(s) | 1513 |
| Hsp92I | GRCGYC | 1 cut(s) | 1542 |
| Kpn2I | TCCGGA | 1 cut(s) | 1033 |
| KroI | GCCGGC | 1 cut(s) | 2579 |
| KroNI | GCCGGC | 1 cut(s) | 2581 |
| LmnI | GCTCC | 4 cut(s) | 1231, 1555, 1675, 1978 |
| LweI | GCATC | 5 cut(s) | 14, 1174, 1211, 1990, 2206 |
| MaeI | CTAG | 5 cut(s) | 243, 548, 1086, 1475, 1706 |
| MaeII | ACGT | 1 cut(s) | 1513 |
| MaeIII | GTNAC | 3 cut(s) | 872, 1658, 2062 |
| MfeI | CAATTG | 2 cut(s) | 149, 1375 |
| MflI | RGATCY | 3 cut(s) | 13, 178, 1441 |
| MhlI | GDGCHC | 3 cut(s) | 60, 1680, 1907 |
| MlsI | TGGCCA | 2 cut(s) | 1863, 2514 |
| MluNI | TGGCCA | 2 cut(s) | 1863, 2514 |
| MlyI | GAGTC | 4 cut(s) | 1283, 1519, 1795, 2275 |
| Mox20I | TGGCCA | 2 cut(s) | 1863, 2514 |
| Mph1103I | ATGCAT | 2 cut(s) | 1135, 2359 |
| MroI | TCCGGA | 1 cut(s) | 1033 |
| MroNI | GCCGGC | 1 cut(s) | 2579 |
| MscI | TGGCCA | 2 cut(s) | 1863, 2514 |
| MseI | TTAA | 7 cut(s) | 272, 410, 611, 666, 909, 1128, 2081 |
| MslI | CAYNNNNRTG | 4 cut(s) | 462, 1326, 2069, 2345 |
| Msp20I | TGGCCA | 2 cut(s) | 1863, 2514 |
| MspA1I | CMGCKG | 1 cut(s) | 42 |
| MspI | CCGG | 7 cut(s) | 189, 593, 1034, 1069, 1293, 2321, 2580 |
| MspR9I | CCNGG | 7 cut(s) | 189, 190, 711, 1070, 1294, 1901, 2516 |
| MunI | CAATTG | 2 cut(s) | 149, 1375 |
| Mva1269I | GAATGC | 1 cut(s) | 743 |
| MvaI | CCWGG | 3 cut(s) | 711, 1901, 2516 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 42, 55, 64, 862, 1931, 2091, 2123, 2174, 2597 |
| NaeI | GCCGGC | 1 cut(s) | 2581 |
| NciI | CCSGG | 4 cut(s) | 189, 190, 1070, 1294 |
| NdeI | CATATG | 1 cut(s) | 1486 |
| NgoMIV | GCCGGC | 1 cut(s) | 2579 |
| NlaIV | GGNNCC | 4 cut(s) | 455, 1677, 1905, 2158 |
| NmeAIII | GCCGAG | 1 cut(s) | 2457 |
| NmuCI | GTSAC | 2 cut(s) | 1658, 2062 |
| NsiI | ATGCAT | 2 cut(s) | 1135, 2359 |
| NspI | RCATGY | 3 cut(s) | 650, 2357, 2361 |
| PaeI | GCATGC | 1 cut(s) | 2357 |
| PaeR7I | CTCGAG | 1 cut(s) | 1189 |
| PagI | TCATGA | 2 cut(s) | 747, 1771 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PctI | GAATGC | 1 cut(s) | 743 |
| PdiI | GCCGGC | 1 cut(s) | 2581 |
| PfeI | GAWTC | 6 cut(s) | 83, 329, 1094, 2105, 2337, 2458 |
| PflFI | GACNNNGTC | 1 cut(s) | 382 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2500 |
| PfoI | TCCNGGA | 1 cut(s) | 709 |
| PleI | GAGTC | 4 cut(s) | 1283, 1519, 1795, 2275 |
| PpsI | GAGTC | 4 cut(s) | 1283, 1519, 1795, 2275 |
| Ppu21I | YACGTR | 1 cut(s) | 1514 |
| Psp6I | CCWGG | 3 cut(s) | 709, 1899, 2514 |
| PspEI | GGTNACC | 1 cut(s) | 2062 |
| PspGI | CCWGG | 3 cut(s) | 709, 1899, 2514 |
| PspN4I | GGNNCC | 4 cut(s) | 455, 1677, 1905, 2158 |
| PspOMI | GGGCCC | 1 cut(s) | 1903 |
| PspPI | GGNCC | 5 cut(s) | 454, 713, 1651, 1903, 1904 |
| PspXI | VCTCGAGB | 1 cut(s) | 1189 |
| PstI | CTGCAG | 2 cut(s) | 789, 1255 |
| PsuI | RGATCY | 3 cut(s) | 13, 178, 1441 |
| PsyI | GACNNNGTC | 1 cut(s) | 382 |
| RsaI | GTAC | 5 cut(s) | 235, 552, 1267, 1316, 1718 |
| RsaNI | GTAC | 5 cut(s) | 234, 551, 1266, 1315, 1717 |
| RseI | CAYNNNNRTG | 4 cut(s) | 462, 1326, 2069, 2345 |
| SaqAI | TTAA | 7 cut(s) | 272, 410, 611, 666, 909, 1128, 2081 |
| Sau96I | GGNCC | 5 cut(s) | 454, 713, 1651, 1903, 1904 |
| ScaI | AGTACT | 1 cut(s) | 1316 |
| SchI | GAGTC | 4 cut(s) | 1283, 1519, 1795, 2275 |
| ScrFI | CCNGG | 7 cut(s) | 189, 190, 711, 1070, 1294, 1901, 2516 |
| SduI | GDGCHC | 3 cut(s) | 60, 1680, 1907 |
| SfaNI | GCATC | 5 cut(s) | 14, 1174, 1211, 1990, 2206 |
| SfcI | CTRYAG | 4 cut(s) | 785, 1251, 1988, 2448 |
| Sfr274I | CTCGAG | 1 cut(s) | 1189 |
| SinI | GGWCC | 2 cut(s) | 713, 1651 |
| SlaI | CTCGAG | 1 cut(s) | 1189 |
| SmaI | CCCGGG | 1 cut(s) | 190 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 462, 1326, 2069, 2345 |
| SmlI | CTYRAG | 8 cut(s) | 209, 492, 1189, 1841, 1880, 1955, 2197, 2247 |
| SmoI | CTYRAG | 8 cut(s) | 209, 492, 1189, 1841, 1880, 1955, 2197, 2247 |
| SnaBI | TACGTA | 1 cut(s) | 1514 |
| SpeI | ACTAGT | 2 cut(s) | 242, 547 |
| SphI | GCATGC | 1 cut(s) | 2357 |
| SsiI | CCGC | 8 cut(s) | 30, 36, 42, 68, 71, 287, 926, 1823 |
| SspMI | CTAG | 5 cut(s) | 243, 548, 1086, 1475, 1706 |
| StyD4I | CCNGG | 7 cut(s) | 187, 188, 709, 1068, 1292, 1899, 2514 |
| StyI | CCWWGG | 3 cut(s) | 1584, 1705, 1720 |
| TaaI | ACNGT | 5 cut(s) | 1174, 1278, 1992, 2068, 2449 |
| TaiI | ACGT | 1 cut(s) | 1516 |
| TaqI | TCGA | 2 cut(s) | 804, 1190 |
| TaqII | GACCGA | 1 cut(s) | 1668 |
| TatI | WGTACW | 2 cut(s) | 550, 1314 |
| TauI | GCSGC | 5 cut(s) | 32, 39, 45, 70, 73 |
| TfiI | GAWTC | 6 cut(s) | 83, 329, 1094, 2105, 2337, 2458 |
| Tru1I | TTAA | 7 cut(s) | 272, 410, 611, 666, 909, 1128, 2081 |
| Tru9I | TTAA | 7 cut(s) | 272, 410, 611, 666, 909, 1128, 2081 |
| TscAI | CASTG | 5 cut(s) | 789, 985, 1252, 1413, 1753 |
| TseFI | GTSAC | 2 cut(s) | 1658, 2062 |
| Tsp45I | GTSAC | 2 cut(s) | 1658, 2062 |
| TspGWI | ACGGA | 2 cut(s) | 2000, 2117 |
| TspMI | CCCGGG | 1 cut(s) | 188 |
| TspRI | CASTG | 5 cut(s) | 789, 985, 1252, 1413, 1753 |
| Tth111I | GACNNNGTC | 1 cut(s) | 382 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2500 |
| VpaK11BI | GGWCC | 2 cut(s) | 713, 1651 |
| XapI | RAATTY | 3 cut(s) | 228, 661, 761 |
| XceI | RCATGY | 3 cut(s) | 650, 2357, 2361 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1343 |
| XhoI | CTCGAG | 1 cut(s) | 1189 |
| XmaI | CCCGGG | 1 cut(s) | 188 |
| XmaJI | CCTAGG | 1 cut(s) | 1705 |
| XspI | CTAG | 5 cut(s) | 243, 548, 1086, 1475, 1706 |
| ZrmI | AGTACT | 1 cut(s) | 1316 |
| Zsp2I | ATGCAT | 2 cut(s) | 1135, 2359 |