Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8466619.1

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1856

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8466619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 607 bp

ctgaggattcgagctgcattggttaagttgagtagctgcgatgggttgttgttagtttcgtccgatgaagatttggccttgaagcaacaattggagttatatgtggagagggttcaagatcccgatcccgggttgcagaaggttgcccttgagagtatgaggcaggaaattcgtacctcaactagttccatgacctcagttccaaagccgttaaaatatcttcgcccacattatggaactctaaaagcatattatgaaacaatgagtgattcggatttgaggaaatacctcgcagatatattgtcggttttggcattgaccatgtctgctgaaggagaacgggaaagcttaaagtttagattattgggttcagatggtgatattggttcatggggccatgaatatgtcaggaacttagctggagaaattgctcaagaatatgccaagcgacagagtgatgagaccccctttgatgatctaatggaactagtacaacaaatagttgcttttcacatgaggcacaatgccgaaccggaagctgttgaccttttaatggaggtggaagaccttgatctgttagttgagcatgttgataagacaaatttta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

202

Amino Acids

22.92

Weight (kDa)

4.75

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	233
AclWI	GGATC	2 cut(s)	113, 119
AcsI	RAATTY	2 cut(s)	168, 601
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	175, 492
AfiI	CCNNNNNNNGG	4 cut(s)	128, 129, 233, 553
AgsI	TTSAA	2 cut(s)	82, 116
AhlI	ACTAGT	2 cut(s)	182, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	14, 36, 348, 419, 539
AluI	AGCT	5 cut(s)	14, 36, 348, 419, 539
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	2 cut(s)	113, 119
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	75, 394
ApeKI	GCWGC	2 cut(s)	14, 36
ApoI	RAATTY	2 cut(s)	168, 601
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	2 cut(s)	129, 130
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	35, 368
BceAI	ACGGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BcnI	CCSGG	2 cut(s)	129, 130
BcoDI	GTCTC	1 cut(s)	455
BcuI	ACTAGT	2 cut(s)	182, 487
BfaI	CTAG	2 cut(s)	183, 488
BisI	GCNGC	2 cut(s)	15, 37
BlsI	GCNGC	2 cut(s)	16, 38
Bme1390I	CCNGG	2 cut(s)	129, 130
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	129, 130
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	2 cut(s)	170, 417
BpuMI	CCSGG	2 cut(s)	129, 130
BsaBI	GATNNNNATC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 129, 233, 553
Bse8I	GATNNNNATC	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	128
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	4 cut(s)	128, 129, 233, 553
BseMII	CTCAG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	2 cut(s)	77, 396
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	129, 533
BslI	CCNNNNNNNGG	4 cut(s)	128, 129, 233, 553
BsmAI	GTCTC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	77, 396
Bso31I	GGTCTC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	118, 124, 475, 571
BspANI	GGCC	2 cut(s)	77, 396
BspCNI	CTCAG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	113, 119
BspTNI	GGTCTC	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	4 cut(s)	118, 124, 475, 571
BstDEI	CTNAG	3 cut(s)	2, 196, 415
BstKTI	GATC	4 cut(s)	121, 127, 478, 574
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	118, 124, 475, 571
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	127, 128
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	77, 396
BtgZI	GCGATG	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	394
Cfr9I	CCCGGG	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	174, 491
CviAII	CATG	6 cut(s)	190, 322, 390, 398, 514, 587
CviJI	RGCY	8 cut(s)	14, 36, 77, 208, 348, 396, 419, 539
CviKI_1	RGCY	8 cut(s)	14, 36, 77, 208, 348, 396, 419, 539
CviQI	GTAC	2 cut(s)	174, 491
DdeI	CTNAG	3 cut(s)	2, 196, 415
DpnI	GATC	4 cut(s)	120, 126, 477, 573
DpnII	GATC	4 cut(s)	118, 124, 475, 571
Eco31I	GGTCTC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	128
FaeI	CATG	6 cut(s)	193, 325, 393, 401, 517, 590
FatI	CATG	6 cut(s)	189, 321, 389, 397, 513, 586
Fnu4HI	GCNGC	2 cut(s)	15, 37
Fsp4HI	GCNGC	2 cut(s)	15, 37
FspBI	CTAG	2 cut(s)	183, 488
GluI	GCNGC	2 cut(s)	15, 37
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	77, 396
HapII	CCGG	2 cut(s)	129, 533
Hin1II	CATG	6 cut(s)	193, 325, 393, 401, 517, 590
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	2 cut(s)	7, 269
HpaII	CCGG	2 cut(s)	129, 533
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	3 cut(s)	64, 274, 373
Hpy188III	TCNNGA	4 cut(s)	116, 122, 409, 434
Hpy8I	GTNNAC	1 cut(s)	544
HpyAV	CCTTC	2 cut(s)	133, 326
HpyCH4V	TGCA	2 cut(s)	17, 136
HpyF3I	CTNAG	3 cut(s)	2, 196, 415
Hsp92II	CATG	6 cut(s)	193, 325, 393, 401, 517, 590
Kzo9I	GATC	4 cut(s)	118, 124, 475, 571
LpnPI	CCDG	5 cut(s)	142, 149, 394, 405, 546
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	183, 488
MalI	GATC	4 cut(s)	120, 126, 477, 573
MboI	GATC	4 cut(s)	118, 124, 475, 571
MboII	GAAGA	3 cut(s)	80, 212, 575
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	4 cut(s)	89, 168, 426, 601
MnlI	CCTC	8 cut(s)	102, 153, 187, 205, 273, 299, 510, 550
MseI	TTAA	4 cut(s)	24, 212, 350, 551
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	2 cut(s)	129, 533
MspR9I	CCNGG	2 cut(s)	129, 130
MunI	CAATTG	1 cut(s)	89
NciI	CCSGG	2 cut(s)	129, 130
NdeII	GATC	4 cut(s)	118, 124, 475, 571
NlaIII	CATG	6 cut(s)	193, 325, 393, 401, 517, 590
NlaIV	GGNNCC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	7, 269
PflFI	GACNNNGTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	16, 38
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	322
RsaI	GTAC	2 cut(s)	175, 492
RsaNI	GTAC	2 cut(s)	174, 491
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	4 cut(s)	24, 212, 350, 551
SatI	GCNGC	2 cut(s)	15, 37
Sau3AI	GATC	4 cut(s)	118, 124, 475, 571
Sau96I	GGNCC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	129, 130
SmaI	CCCGGG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	149, 432
SmoI	CTYRAG	2 cut(s)	149, 432
SpeI	ACTAGT	2 cut(s)	182, 487
Sse9I	AATT	4 cut(s)	89, 168, 426, 601
SspMI	CTAG	2 cut(s)	183, 488
StyD4I	CCNGG	2 cut(s)	127, 128
TaqI	TCGA	1 cut(s)	10
TasI	AATT	4 cut(s)	89, 168, 426, 601
TatI	WGTACW	1 cut(s)	490
TfiI	GAWTC	2 cut(s)	7, 269
Tru1I	TTAA	4 cut(s)	24, 212, 350, 551
Tru9I	TTAA	4 cut(s)	24, 212, 350, 551
TseI	GCWGC	2 cut(s)	14, 36
TspDTI	ATGAA	4 cut(s)	81, 270, 378, 414
TspMI	CCCGGG	1 cut(s)	128
Tth111I	GACNNNGTC	1 cut(s)	322
Van91I	CCANNNNNTGG	1 cut(s)	233
XapI	RAATTY	2 cut(s)	168, 601
XceI	RCATGY	1 cut(s)	590
XmaI	CCCGGG	1 cut(s)	128
XspI	CTAG	2 cut(s)	183, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.