Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

11365533 .. 11366428

Gene Structure 896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22956

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCTGCTGAAGGAGAACGGGAAAGCTTAAAGTTTAGATTATTGGGGTCAGACGGTGATATTGGTTCATGGGGCCATGAACATTTACAGAGTGATGAGACCCCCTTTGATGATCTAATGGAACTAGTACAACAAATAGTTGCCTTTCACATAAGGGTAAGATCAACAACAAGATTGTGTGTGTGTGTTTTTTTTTTTTTAATTCTTTTTTTTATATTTTTTTTATTTATTTTGGTTCTAATCATGTATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

84

Amino Acids

9.85

Weight (kDa)

4.9

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	2 - 51	7.5e-06	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	129
AhlI	ACTAGT	1 cut(s)	124
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	92
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	92
BshFI	GGCC	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	112, 161
BspANI	GGCC	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	92
BssMI	GATC	2 cut(s)	112, 161
Bst4CI	ACNGT	1 cut(s)	56
BstKTI	GATC	2 cut(s)	115, 164
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	112, 161
BsuRI	GGCC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	3 cut(s)	69, 77, 244
CviJI	RGCY	2 cut(s)	27, 75
CviKI_1	RGCY	2 cut(s)	27, 75
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	2 cut(s)	114, 163
DpnII	GATC	2 cut(s)	112, 161
Eco31I	GGTCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	30
FaeI	CATG	3 cut(s)	72, 80, 247
FaiI	YATR	6 cut(s)	70, 78, 152, 215, 245, 253
FatI	CATG	3 cut(s)	68, 76, 243
FspBI	CTAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	72, 80, 247
HindIII	AAGCTT	1 cut(s)	25
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	72, 80, 247
Kzo9I	GATC	2 cut(s)	112, 161
MaeI	CTAG	1 cut(s)	125
MalI	GATC	2 cut(s)	114, 163
MboI	GATC	2 cut(s)	112, 161
MluCI	AATT	1 cut(s)	201
MseI	TTAA	2 cut(s)	29, 200
NdeII	GATC	2 cut(s)	112, 161
NlaIII	CATG	3 cut(s)	72, 80, 247
NlaIV	GGNNCC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	73
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	29, 200
Sau3AI	GATC	2 cut(s)	112, 161
Sau96I	GGNCC	1 cut(s)	73
SetI	ASST	1 cut(s)	29
SgeI	CNNG	5 cut(s)	32, 81, 89, 137, 183
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	56
TasI	AATT	1 cut(s)	201
TatI	WGTACW	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	29, 200
Tru9I	TTAA	2 cut(s)	29, 200
TspDTI	ATGAA	2 cut(s)	57, 93
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.